The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	495333	585624	5009390	tRNA,transposase,protease,integrase	Shigella_phage(28.12%)	93	511098:511113	540657:540672
VDL20575.1|495333_496686_+|protease	Metalloprotease PmbA	protease	NA	NA	NA	NA
VDL20576.1|496868_497255_+	Soluble cytochrome b562	NA	NA	NA	NA	NA
VDL20577.1|497299_497764_-	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	59.7	1.1e-52
VDL20578.1|497921_500060_-	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.5	1.5e-266
VDL20579.1|500453_502109_-	Trehalose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VDL20580.1|502158_503580_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
VDL20581.1|503698_504646_-	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
VDL20582.1|505024_507721_+	Magnesium-transporting ATPase, P-type 1	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.4	9.0e-46
VDL20584.1|507926_508313_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
VDL20585.1|508385_508847_-	Aspartate carbamoyltransferase regulatory chain	NA	NA	NA	NA	NA
VDL20586.1|508859_509795_-	Aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.9e-52
VDL20587.1|510213_510609_-	RutC family protein YjgH	NA	NA	NA	NA	NA
VDL20588.1|510739_511453_-	Cyclic-di-GMP-binding biofilm dispersal mediator protein	NA	NA	NA	NA	NA
511098:511113	attL	CGGGCGGCTTCAACAG	NA	NA	NA	NA
VDL20589.1|511523_512117_+	HTH-type transcriptional repressor BdcR	NA	NA	NA	NA	NA
VDL20590.1|512261_512714_+	Toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA	NA
VDL20591.1|512836_513598_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20593.1|513546_513696_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20595.1|513913_514273_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q76S41	Shigella_phage	99.2	6.8e-58
VDL20597.1|514236_515136_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q9ZXG3	Shigella_phage	96.3	3.7e-169
VDL20599.1|515153_515615_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20600.1|515904_516918_-	Ornithine carbamoyltransferase subunit I	NA	NA	NA	NA	NA
VDL20601.1|517079_517496_+	Regulator of ribonuclease activity B	NA	NA	NA	NA	NA
VDL20602.1|517541_518045_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20603.1|518237_519434_+	Inner membrane protein YjgN	NA	NA	NA	NA	NA
VDL20604.1|519487_522343_-|tRNA	Valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.8e-140
VDL20605.1|522342_522786_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
VDL20606.1|523139_524651_-	Cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
VDL20607.1|524917_526018_+	Lipopolysaccharide export system permease protein LptF	NA	NA	NA	NA	NA
VDL20608.1|526017_527100_+	Lipopolysaccharide export system permease protein LptG	NA	NA	NA	NA	NA
VDL20609.1|527260_528763_-	hypothetical protein	NA	A0A248XCZ8	Klebsiella_phage	44.2	4.6e-84
VDL20610.1|528840_529839_-	HTH-type transcriptional regulator GntR	NA	NA	NA	NA	NA
VDL20611.1|529905_531225_-	Gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
VDL20613.1|531287_532052_-	Gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VDL20615.1|532075_533107_-	L-idonate 5-dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
VDL20617.1|533323_533887_+	Thermoresistant gluconokinase	NA	NA	NA	NA	NA
VDL20619.1|533890_534910_-	Aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	1.4e-44
VDL20620.1|535227_535422_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20621.1|535450_536641_+|integrase	Prophage integrase IntA	integrase	B7SYF8	Stenotrophomonas_phage	40.1	9.4e-72
VDL20622.1|537034_537277_-	Phosphoethanolamine transferase OpgE	NA	NA	NA	NA	NA
VDL20623.1|537400_537832_-	Phosphoethanolamine transferase OpgE	NA	NA	NA	NA	NA
VDL20624.1|539459_539720_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL20625.1|539843_540209_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q76S41	Shigella_phage	100.0	9.6e-60
VDL20626.1|540166_541072_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q9ZXG3	Shigella_phage	97.0	4.2e-173
540657:540672	attR	CGGGCGGCTTCAACAG	NA	NA	NA	NA
VDL20628.1|540996_542124_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL20629.1|542749_543745_+	cmlV_1_U09991	NA	NA	NA	NA	NA
VDL20630.1|543695_543965_+	Putative metabolite transport protein YjhB	NA	NA	NA	NA	NA
VDL20631.1|543976_545095_+	1,5-anhydro-D-fructose reductase	NA	NA	NA	NA	NA
VDL20632.1|545137_545263_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20633.1|545315_545666_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20635.1|545886_546159_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q716C1	Shigella_phage	97.7	1.0e-37
VDL20637.1|546400_546808_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q716C2	Shigella_phage	97.5	4.5e-66
VDL20639.1|547026_548103_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL20641.1|548221_548428_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q716C2	Shigella_phage	98.5	3.0e-34
VDL20643.1|548362_548776_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20645.1|548735_548894_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20646.1|548838_550836_-	Glycine betaine transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	7.4e-21
VDL20647.1|550989_551808_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0I4A4	Acinetobacter_phage	45.2	1.2e-65
VDL20648.1|551843_552146_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL20649.1|552344_552758_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q716C2	Shigella_phage	97.4	1.0e-62
VDL20650.1|552754_552997_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q716C2	Shigella_phage	92.4	4.7e-39
VDL20651.1|553079_553337_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20652.1|553893_554661_-	ole(C)_1_L06249	NA	G3M9Y6	Bacillus_virus	24.8	1.1e-12
VDL20653.1|554661_555618_-	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VDL20654.1|555614_556613_-	Fe(3+) dicitrate transport system permease protein FecC	NA	NA	NA	NA	NA
VDL20655.1|556609_557512_-	Fe(3+) dicitrate-binding periplasmic protein	NA	NA	NA	NA	NA
VDL20656.1|557556_559881_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA	NA
VDL20657.1|559967_560921_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20658.1|560917_561439_-	putative RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
VDL20659.1|564186_565545_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20660.1|565783_567169_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.3	3.4e-259
VDL20661.1|567218_567566_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
VDL20662.1|567562_567943_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
VDL20663.1|568061_568298_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20664.1|568297_568732_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20665.1|568719_569121_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20666.1|569380_569950_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20667.1|570149_570350_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20668.1|571473_571680_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20669.1|571774_572377_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20670.1|572698_574183_-	hypothetical protein	NA	NA	NA	NA	NA
VDL20671.1|575412_576285_+	GTPase Era	NA	NA	NA	NA	NA
VDL20672.1|576656_579776_+	Antigen 43	NA	NA	NA	NA	NA
VDL20673.1|579846_580005_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20674.1|580159_580978_+	hypothetical protein	NA	A0A2C9CX26	Yersinia_phage	39.3	6.1e-46
VDL20675.1|581319_581793_+	Antirestriction protein KlcA	NA	A9J566	Pseudomonas_phage	30.3	8.7e-13
VDL20676.1|581808_582285_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20677.1|582347_582569_+	hypothetical protein	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
VDL20679.1|582568_582682_+	hypothetical protein	NA	NA	NA	NA	NA
VDL20681.1|582731_583100_+	Cytoskeleton bundling-enhancing protein CbeA	NA	NA	NA	NA	NA
VDL20683.1|583323_583659_-	Insertion sequence IS5376 putative ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	36.3	1.1e-09
VDL20684.1|583738_584071_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL20685.1|584085_585048_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	K4I413	Acidithiobacillus_phage	45.3	3.0e-76
VDL20686.1|585135_585624_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	K4I413	Acidithiobacillus_phage	44.5	9.3e-26
>prophage 2
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	1530639	1578947	5009390	transposase	Enterobacteria_phage(50.94%)	67	NA	NA
VDL22484.1|1530639_1531710_-	Tyrosine recombinase XerD	NA	K7P6P6	Enterobacteria_phage	100.0	3.9e-202
VDL22488.1|1531945_1532113_-	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
VDL22492.1|1532427_1532958_+	hypothetical protein	NA	NA	NA	NA	NA
VDL22494.1|1533168_1533390_-	hypothetical protein	NA	A0A0K2FI84	Escherichia_phage	97.3	4.9e-35
VDL22496.1|1533488_1533770_-	hypothetical protein	NA	A0A0P0ZE02	Stx2-converting_phage	95.7	8.7e-45
VDL22498.1|1533780_1533972_-	hypothetical protein	NA	A0A0P0ZC60	Stx2-converting_phage	98.3	2.0e-24
VDL22500.1|1533944_1534127_-	hypothetical protein	NA	A0A1U8QQC1	Enterobacteria_phage	98.3	3.7e-28
VDL22502.1|1534123_1534804_-	hypothetical protein	NA	A0A0P0ZCD4	Stx2-converting_phage	98.7	3.0e-131
VDL22504.1|1534800_1535586_-	hypothetical protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
VDL22506.1|1535591_1535888_-	hypothetical protein	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
VDL22508.1|1535963_1536170_-	Killing protein KilR	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
VDL22511.1|1536642_1537500_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22513.1|1537496_1538246_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22515.1|1538368_1539058_-	putative HTH-type transcriptional regulator	NA	Q76H56	Enterobacteria_phage	75.0	2.8e-92
VDL22517.1|1539162_1539393_+	hypothetical protein	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
VDL22519.1|1539462_1540002_+	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	66.1	2.0e-61
VDL22521.1|1540013_1541018_+	hypothetical protein	NA	A0A0M5M7Y1	Salmonella_phage	63.4	1.6e-109
VDL22523.1|1541014_1541716_+	hypothetical protein	NA	K7P6G2	Enterobacteria_phage	99.6	3.8e-129
VDL22525.1|1541712_1542006_+	hypothetical protein	NA	A0A0N6WES4	Escherichia_phage	95.7	1.1e-42
VDL22527.1|1542042_1542234_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22529.1|1542490_1543051_+	hypothetical protein	NA	NA	NA	NA	NA
VDL22531.1|1543047_1543500_+	Outer membrane lipoprotein SlyB	NA	NA	NA	NA	NA
VDL22533.1|1543690_1544146_+	hypothetical protein	NA	I6PD71	Cronobacter_phage	65.6	8.6e-58
VDL22535.1|1544145_1544316_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
VDL22538.1|1544308_1544599_+	hypothetical protein	NA	K7PGZ6	Enterobacteria_phage	91.7	4.8e-46
VDL22541.1|1544595_1544958_+	Crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	97.4	1.5e-60
VDL22544.1|1544957_1545095_+	hypothetical protein	NA	K7PHH3	Enterobacteria_phage	68.3	9.2e-08
VDL22546.1|1545180_1545558_+	hypothetical protein	NA	Q777W5	Enterobacteria_phage	84.2	7.3e-55
VDL22548.1|1545931_1546231_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL22550.1|1546227_1547094_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VDL22552.1|1547121_1547499_-	Outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	59.8	1.7e-35
VDL22554.1|1547691_1548651_+	hypothetical protein	NA	NA	NA	NA	NA
VDL22556.1|1549142_1549721_+	HTH-type transcriptional regulator GadW	NA	NA	NA	NA	NA
VDL22558.1|1549968_1550079_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22560.1|1550156_1550516_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL22563.1|1550740_1551310_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q9MCT5	Escherichia_phage	92.1	1.5e-99
VDL22566.1|1551729_1552911_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	K4I413	Acidithiobacillus_phage	48.5	1.4e-104
VDL22569.1|1552907_1553135_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL22572.1|1553557_1553773_+	hypothetical protein	NA	A5LH82	Enterobacteria_phage	98.6	1.2e-33
VDL22575.1|1553772_1554270_+	Lysozyme RrrD	NA	A0A1B5FP97	Escherichia_phage	97.0	1.6e-89
VDL22577.1|1554254_1554734_+	hypothetical protein	NA	A0A2D1GLQ7	Escherichia_phage	96.8	1.6e-75
VDL22580.1|1554721_1554874_+	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	3.1e-20
VDL22583.1|1555015_1555180_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22586.1|1555225_1555636_-	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
VDL22589.1|1556314_1556860_+	hypothetical protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
VDL22591.1|1556834_1558760_+	hypothetical protein	NA	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
VDL22595.1|1558756_1558963_+	hypothetical protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
VDL22599.1|1558959_1560561_+	hypothetical protein	NA	A0A0K2FJC0	Enterobacteria_phage	98.7	3.2e-309
VDL22603.1|1560541_1561861_+	Putative signal peptide peptidase SppA	NA	A0A2I6TC87	Escherichia_phage	98.9	2.8e-234
VDL22606.1|1561870_1562203_+	hypothetical protein	NA	A0A2R9YJN3	Escherichia_phage	97.3	2.1e-53
VDL22609.1|1562258_1563284_+	hypothetical protein	NA	C6ZCY2	Enterobacteria_phage	98.2	2.8e-189
VDL22611.1|1563325_1563721_+	hypothetical protein	NA	A0A2R9YJP4	Escherichia_phage	93.9	9.1e-56
VDL22614.1|1563732_1564086_+	hypothetical protein	NA	A0A2R9YJJ5	Escherichia_phage	99.1	7.6e-62
VDL22616.1|1564097_1564676_+	hypothetical protein	NA	A0A2R9YJK4	Escherichia_phage	96.9	2.9e-79
VDL22619.1|1564672_1565068_+	hypothetical protein	NA	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
VDL22622.1|1565075_1565816_+	hypothetical protein	NA	A0A0K2FJ05	Enterobacteria_phage	97.2	8.9e-129
VDL22626.1|1565831_1566254_+	hypothetical protein	NA	A0A0K2FIQ8	Enterobacteria_phage	85.0	5.0e-60
VDL22630.1|1566235_1566670_+	hypothetical protein	NA	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
VDL22634.1|1566662_1569242_+	hypothetical protein	NA	A0A2R9YJM8	Escherichia_phage	90.2	0.0e+00
VDL22637.1|1569238_1569568_+	hypothetical protein	NA	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
VDL22639.1|1569567_1570266_+	hypothetical protein	NA	A0A0K2FJ01	Enterobacteria_phage	99.1	1.5e-133
VDL22642.1|1570271_1571015_+	CysO-cysteine peptidase	NA	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
VDL22645.1|1571011_1571584_+	hypothetical protein	NA	A0A0K2FJB0	Escherichia_phage	99.5	6.7e-84
VDL22647.1|1571644_1575142_+	hypothetical protein	NA	A0A291AWT4	Escherichia_phage	98.5	0.0e+00
VDL22650.1|1575211_1575811_+	Attachment invasion locus protein	NA	A0A291AWV3	Escherichia_phage	98.5	1.5e-110
VDL22652.1|1576372_1577110_-	hypothetical protein	NA	NA	NA	NA	NA
VDL22654.1|1577240_1578947_+	hypothetical protein	NA	U5N099	Enterobacteria_phage	57.2	1.1e-76
>prophage 3
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	1700205	1761082	5009390	tRNA,transposase,protease	Bacillus_phage(20.0%)	47	NA	NA
VDL23025.1|1700205_1700526_+|protease	ATP-dependent Clp protease adapter protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
VDL23028.1|1700556_1702833_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
VDL23032.1|1703517_1703736_-	Translation initiation factor IF-1	NA	NA	NA	NA	NA
VDL23036.1|1704020_1704725_-|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
VDL23039.1|1704766_1706488_-	ole(C)_1_L06249	NA	W8CYL7	Bacillus_phage	25.2	1.9e-20
VDL23041.1|1706488_1706776_-	ATP-binding/permease protein CydD	NA	NA	NA	NA	NA
VDL23044.1|1706751_1708254_-	ATP-binding/permease protein CydD	NA	F2Y302	Organic_Lake_phycodnavirus	28.0	1.3e-06
VDL23047.1|1708376_1709342_-	Thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
VDL23050.1|1709886_1710381_+	Leucine-responsive regulatory protein	NA	NA	NA	NA	NA
VDL23053.1|1710515_1714661_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
VDL23056.1|1714815_1715427_+	Outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VDL23059.1|1715437_1716781_+	Replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
VDL23062.1|1716871_1718164_+|tRNA	Serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
VDL23065.1|1718402_1720847_+	Dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	49.8	5.0e-221
VDL23068.1|1720857_1721475_+	Anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
VDL23071.1|1721476_1722340_+	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA	NA
VDL23074.1|1722375_1723002_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23078.1|1723316_1724465_+	putative MFS-type transporter YcaD	NA	NA	NA	NA	NA
VDL23082.1|1724674_1726105_+	Inner membrane transporter YcaM	NA	NA	NA	NA	NA
VDL23086.1|1726105_1727014_-	HTH-type transcriptional regulator PgrR	NA	NA	NA	NA	NA
VDL23090.1|1727113_1727704_+	Glutathione-regulated potassium-efflux system ancillary protein KefF	NA	NA	NA	NA	NA
VDL23095.1|1727785_1728526_-	Pyruvate formate-lyase 1-activating enzyme	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
VDL23098.1|1728717_1731000_-	Formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
VDL23101.1|1731054_1731912_-	putative formate transporter 1	NA	NA	NA	NA	NA
VDL23104.1|1732311_1734072_-	Ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA	NA
VDL23107.1|1734201_1734894_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23110.1|1735092_1736181_+	Phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
VDL23113.1|1736251_1737535_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VDL23116.1|1737678_1739007_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23120.1|1739098_1743559_-	Chromosome partition protein MukB	NA	NA	NA	NA	NA
VDL23123.1|1743558_1744263_-	Chromosome partition protein MukE	NA	NA	NA	NA	NA
VDL23125.1|1744243_1745566_-	Chromosome partition protein MukF	NA	NA	NA	NA	NA
VDL23128.1|1745562_1746348_-|tRNA	tRNA 5-carboxymethoxyuridine methyltransferase	tRNA	NA	NA	NA	NA
VDL23131.1|1746483_1747263_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23135.1|1747239_1748133_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23138.1|1748286_1749033_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
VDL23141.1|1749029_1749212_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23144.1|1749263_1750496_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23148.1|1750532_1751519_-	Tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
VDL23151.1|1751515_1753264_-	vga(B)_1_U82085	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
VDL23154.1|1753300_1755565_-	ComE operon protein 3	NA	NA	NA	NA	NA
VDL23157.1|1755771_1756056_-	Integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
VDL23161.1|1756215_1757889_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VDL23164.1|1757999_1758683_-	Cytidylate kinase	NA	NA	NA	NA	NA
VDL23166.1|1758855_1759620_-|protease	Metalloprotease LoiP	protease	NA	NA	NA	NA
VDL23169.1|1759755_1760115_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23172.1|1760083_1761082_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
>prophage 4
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	1767366	1795755	5009390	tRNA,transposase	Escherichia_phage(60.0%)	33	NA	NA
VDL23190.1|1767366_1768071_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
VDL23193.1|1768173_1768776_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23196.1|1768986_1769211_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23199.1|1769311_1770124_+	blaNDM-4_1_JQ348841	NA	NA	NA	NA	NA
VDL23203.1|1770232_1770493_+	Bleomycin resistance protein	NA	NA	NA	NA	NA
VDL23208.1|1770497_1771280_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
VDL23211.1|1771273_1772113_+	sul1_33_AJ564903	NA	NA	NA	NA	NA
VDL23212.1|1772514_1773540_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23215.1|1773554_1774055_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23217.1|1774265_1774490_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23220.1|1774589_1775765_+	blaNDM-6_1_JN967644	NA	NA	NA	NA	NA
VDL23223.1|1775769_1776549_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
VDL23227.1|1777780_1779322_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23230.1|1779532_1779757_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23233.1|1779856_1780141_+	blaNDM-3_1_JQ734687	NA	NA	NA	NA	NA
VDL23237.1|1780100_1780616_+	blaNDM-2_1_JF703135	NA	NA	NA	NA	NA
VDL23242.1|1781202_1781532_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
VDL23245.1|1781927_1782668_+	sul1_29_AJ746361	NA	NA	NA	NA	NA
VDL23248.1|1783043_1783700_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23250.1|1783741_1784581_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23253.1|1784791_1785019_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23256.1|1785011_1785182_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23259.1|1785537_1785972_+	catA2_1_X53796	NA	A0A1I9LJQ7	Stx_converting_phage	50.0	4.7e-37
VDL23262.1|1786026_1786296_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23266.1|1786540_1786738_-	HTH-type transcriptional regulator SutR	NA	NA	NA	NA	NA
VDL23270.1|1786918_1787758_+	sul1_33_AJ564903	NA	NA	NA	NA	NA
VDL23274.1|1787885_1788386_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23278.1|1788892_1789657_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
VDL23281.1|1790149_1790734_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23284.1|1790733_1791972_-	putative multidrug-efflux transporter	NA	NA	NA	NA	NA
VDL23287.1|1791968_1792874_-	mph(A)_2_U36578	NA	NA	NA	NA	NA
VDL23290.1|1793003_1793708_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
VDL23292.1|1794354_1795755_-|tRNA	Asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
>prophage 5
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	1842709	1901153	5009390	transposase,protease	Enterobacteria_phage(30.77%)	59	NA	NA
VDL23419.1|1842709_1843297_+|protease	Hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
VDL23422.1|1843293_1843692_+	Hydrogenase-1 operon protein HyaE	NA	NA	NA	NA	NA
VDL23427.1|1843688_1844546_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23431.1|1844679_1846224_+	Cytochrome bd-II ubiquinol oxidase subunit 1	NA	NA	NA	NA	NA
VDL23434.1|1846235_1847372_+	Cytochrome bd-II ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
VDL23437.1|1847384_1847477_+	Putative cytochrome bd-II ubiquinol oxidase subunit AppX	NA	NA	NA	NA	NA
VDL23440.1|1847556_1848855_+	Periplasmic AppA protein	NA	NA	NA	NA	NA
VDL23442.1|1848969_1851150_-	Tyrosine-protein kinase etk	NA	NA	NA	NA	NA
VDL23445.1|1851169_1851616_-	Low molecular weight protein-tyrosine-phosphatase Etp	NA	NA	NA	NA	NA
VDL23448.1|1851603_1852599_-	Polysialic acid transport protein KpsD	NA	NA	NA	NA	NA
VDL23451.1|1852787_1854884_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23455.1|1854883_1855630_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23458.1|1855626_1856271_-	putative lipoprotein GfcB	NA	NA	NA	NA	NA
VDL23461.1|1856377_1856683_-	Threonine-rich inner membrane protein GfcA	NA	NA	NA	NA	NA
VDL23465.1|1857124_1857337_-	Cold shock-like protein CspG	NA	NA	NA	NA	NA
VDL23468.1|1857622_1857835_+	Cold shock-like protein CspG	NA	A0A1W6JNX5	Morganella_phage	71.4	7.8e-22
VDL23471.1|1858228_1858402_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23474.1|1858449_1859523_-	Putative electron transport protein YccM	NA	NA	NA	NA	NA
VDL23477.1|1859594_1862294_-	VanS-L_1_EU250284	NA	A0A1V0SGX0	Hokovirus	31.9	1.0e-36
VDL23480.1|1862421_1863450_+	Periplasmic protein TorT	NA	NA	NA	NA	NA
VDL23482.1|1863422_1864115_-	VanR-F_1_AF155139	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
VDL23485.1|1864244_1865417_+	Cytochrome c-type protein TorC	NA	NA	NA	NA	NA
VDL23488.1|1865416_1867963_+	Trimethylamine-N-oxide reductase 1	NA	A0A077SK27	Escherichia_phage	29.2	1.0e-70
VDL23491.1|1867959_1868559_+	Chaperone protein TorD	NA	NA	NA	NA	NA
VDL23494.1|1868651_1868957_-	Chaperone modulatory protein CbpM	NA	NA	NA	NA	NA
VDL23498.1|1868956_1869877_-	Curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	4.2e-11
VDL23502.1|1870137_1870614_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23505.1|1870625_1871033_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23508.1|1871141_1871390_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23511.1|1871682_1872924_+	Glucose-1-phosphatase	NA	NA	NA	NA	NA
VDL23514.1|1872961_1873189_-	hypothetical protein	NA	NA	NA	NA	NA
VDL23517.1|1873209_1873806_-	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
VDL23520.1|1874178_1874352_+	hypothetical protein	NA	Q9KX95	Enterobacteria_phage	96.3	4.9e-06
VDL23523.1|1874434_1875763_-	Putative pyrimidine permease RutG	NA	Q9KX94	Enterobacteria_phage	98.4	1.0e-231
VDL23526.1|1875783_1876278_-	FMN reductase (NADH) RutF	NA	Q9KX93	Enterobacteria_phage	97.9	5.0e-51
VDL23529.1|1876288_1876879_-	putative malonic semialdehyde reductase RutE	NA	NA	NA	NA	NA
VDL23532.1|1876888_1877689_-	Putative aminoacrylate hydrolase RutD	NA	NA	NA	NA	NA
VDL23534.1|1877696_1878083_-	Putative aminoacrylate peracid reductase RutC	NA	NA	NA	NA	NA
VDL23537.1|1878094_1878790_-	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA	NA
VDL23541.1|1878786_1879878_-	Pyrimidine monooxygenase RutA	NA	NA	NA	NA	NA
VDL23544.1|1880165_1880804_+	HTH-type transcriptional regulator RutR	NA	NA	NA	NA	NA
VDL23547.1|1880843_1884806_-	Bifunctional protein PutA	NA	NA	NA	NA	NA
VDL23550.1|1884860_1885070_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23553.1|1885228_1886737_+	Sodium/proline symporter	NA	NA	NA	NA	NA
VDL23556.1|1887278_1888109_+	Ferrous iron permease EfeU	NA	NA	NA	NA	NA
VDL23559.1|1888166_1889294_+	Iron uptake system component EfeO	NA	NA	NA	NA	NA
VDL23562.1|1889299_1890571_+	Deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
VDL23565.1|1890914_1891211_+	hypothetical protein	NA	NA	NA	NA	NA
VDL23567.1|1891189_1891978_+	PhoH-like protein	NA	R4II13	Cronobacter_phage	76.7	7.8e-91
VDL23570.1|1892027_1892441_-	Biofilm PGA synthesis protein PgaD	NA	NA	NA	NA	NA
VDL23573.1|1892442_1893396_-	Poly-beta-1,6-N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
VDL23577.1|1893528_1893669_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q9MCT5	Escherichia_phage	89.1	8.0e-15
VDL23580.1|1893745_1894444_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q1MVF0	Enterobacteria_phage	87.7	1.5e-114
VDL23585.1|1894510_1895578_-	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase	NA	NA	NA	NA	NA
VDL23589.1|1895586_1898010_-	Poly-beta-1,6-N-acetyl-D-glucosamine export protein	NA	NA	NA	NA	NA
VDL23592.1|1898593_1899952_+	putative diguanylate cyclase YcdT	NA	A0A127AWB9	Bacillus_phage	33.0	1.1e-20
VDL23595.1|1899992_1900358_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	2.3e-21
VDL23598.1|1900354_1900807_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL23601.1|1900853_1901153_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
>prophage 6
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	2117032	2160477	5009390	integrase	Enterobacteria_phage(90.2%)	60	2116830:2116846	2160598:2160614
2116830:2116846	attL	AGAACACTTTCTTAAAT	NA	NA	NA	NA
VDL24290.1|2117032_2118226_+|integrase	Prophage integrase IntA	integrase	K7PGY1	Enterobacteria_phage	100.0	1.3e-235
VDL24293.1|2118461_2118704_-	hypothetical protein	NA	K7PHF4	Enterobacteria_phage	88.8	4.6e-34
VDL24297.1|2118700_2118895_-	hypothetical protein	NA	NA	NA	NA	NA
VDL24301.1|2118887_2119088_-	hypothetical protein	NA	NA	NA	NA	NA
VDL24304.1|2119266_2120358_-	hypothetical protein	NA	K7PKR8	Enterobacteria_phage	59.2	1.7e-115
VDL24307.1|2120370_2123280_-	Exodeoxyribonuclease 8	NA	K7PJT5	Enterobacteria_phage	93.9	0.0e+00
VDL24310.1|2123418_2123580_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	55.8	1.0e-10
VDL24313.1|2123591_2123798_-	Killing protein KilR	NA	K7PM31	Enterobacteria_phage	97.1	7.3e-33
VDL24316.1|2124133_2124379_+	hypothetical protein	NA	I6R0R9	Salmonella_phage	92.8	1.1e-27
VDL24319.1|2124421_2124541_-	hypothetical protein	NA	NA	NA	NA	NA
VDL24323.1|2124576_2124930_-	hypothetical protein	NA	NA	NA	NA	NA
VDL24327.1|2125152_2125536_-	hypothetical protein	NA	A0A0M4R5D1	Salmonella_phage	74.8	2.7e-44
VDL24331.1|2125637_2125871_+	hypothetical protein	NA	A0A0M4QX15	Salmonella_phage	62.3	9.5e-21
VDL24335.1|2125873_2126413_+	hypothetical protein	NA	K7PJT7	Enterobacteria_phage	92.2	5.5e-88
VDL24338.1|2126409_2126514_+	hypothetical protein	NA	NA	NA	NA	NA
VDL24341.1|2126497_2127427_+	hypothetical protein	NA	K7PGZ0	Enterobacteria_phage	97.4	5.7e-157
VDL24343.1|2127423_2128113_+	hypothetical protein	NA	K7P7B6	Enterobacteria_phage	100.0	6.8e-131
VDL24346.1|2128114_2128315_+	hypothetical protein	NA	K7PHG5	Enterobacteria_phage	90.0	2.0e-06
VDL24349.1|2128454_2128691_+	hypothetical protein	NA	K7PGZ4	Enterobacteria_phage	100.0	4.5e-42
VDL24352.1|2129088_2129322_+	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	100.0	2.3e-38
VDL24355.1|2129439_2129688_+	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	97.6	8.8e-41
VDL24359.1|2129722_2130322_+	hypothetical protein	NA	K7PKS6	Enterobacteria_phage	89.9	5.4e-100
VDL24362.1|2130321_2130528_+	hypothetical protein	NA	K7PJT9	Enterobacteria_phage	97.0	7.3e-33
VDL24365.1|2130503_2130821_+	hypothetical protein	NA	K7PGZ6	Enterobacteria_phage	100.0	1.6e-50
VDL24369.1|2130817_2131180_+	Crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	97.5	1.2e-62
VDL24373.1|2131176_2131314_+	hypothetical protein	NA	K7PHH3	Enterobacteria_phage	93.0	1.3e-17
VDL24376.1|2131310_2132000_+	hypothetical protein	NA	I6PDF8	Cronobacter_phage	53.1	2.1e-63
VDL24379.1|2132155_2132671_+	hypothetical protein	NA	NA	NA	NA	NA
VDL24382.1|2132830_2133109_+	hypothetical protein	NA	K7PGZ9	Enterobacteria_phage	100.0	6.0e-46
VDL24385.1|2133080_2133629_+	Lysozyme RrrD	NA	K7PM52	Enterobacteria_phage	98.9	1.4e-102
VDL24388.1|2133625_2134141_+	hypothetical protein	NA	K7PHH7	Enterobacteria_phage	90.1	3.4e-79
VDL24391.1|2134511_2134712_+	hypothetical protein	NA	NA	NA	NA	NA
VDL24394.1|2134715_2135618_+	hypothetical protein	NA	NA	NA	NA	NA
VDL24398.1|2135774_2136503_+	hypothetical protein	NA	M9NZE9	Enterobacteria_phage	97.9	2.6e-117
VDL24401.1|2136750_2137296_+	hypothetical protein	NA	E4WL18	Enterobacteria_phage	100.0	1.2e-95
VDL24404.1|2137270_2139193_+	hypothetical protein	NA	E4WL19	Enterobacteria_phage	98.6	0.0e+00
VDL24407.1|2139192_2139399_+	hypothetical protein	NA	K7PM10	Enterobacteria_phage	100.0	4.5e-30
VDL24410.1|2139395_2140988_+	hypothetical protein	NA	K7PHD3	Enterobacteria_phage	99.8	3.8e-310
VDL24413.1|2140968_2142312_+	Putative signal peptide peptidase SppA	NA	K7PKQ1	Enterobacteria_phage	100.0	7.1e-217
VDL24421.1|2142321_2142654_+	hypothetical protein	NA	E4WL24	Enterobacteria_phage	100.0	9.0e-57
VDL24424.1|2142721_2143747_+	hypothetical protein	NA	K7PGW9	Enterobacteria_phage	100.0	9.2e-193
VDL24426.1|2143792_2144218_+	hypothetical protein	NA	K7PM13	Enterobacteria_phage	95.7	4.7e-42
VDL24429.1|2144228_2144582_+	hypothetical protein	NA	K7PHD8	Enterobacteria_phage	100.0	1.7e-61
VDL24432.1|2144591_2145146_+	hypothetical protein	NA	K7PKQ5	Enterobacteria_phage	100.0	1.8e-81
VDL24435.1|2145142_2145541_+	hypothetical protein	NA	K7PJT1	Enterobacteria_phage	100.0	1.0e-70
VDL24438.1|2145548_2146286_+	hypothetical protein	NA	K7PGX1	Enterobacteria_phage	100.0	5.5e-131
VDL24442.1|2146322_2146745_+	hypothetical protein	NA	K7PM17	Enterobacteria_phage	100.0	6.7e-57
VDL24445.1|2146753_2147074_+	hypothetical protein	NA	K7PHE1	Enterobacteria_phage	100.0	2.1e-55
VDL24448.1|2147051_2149568_+	hypothetical protein	NA	K7PKR0	Enterobacteria_phage	93.0	0.0e+00
VDL24451.1|2149573_2149921_+	hypothetical protein	NA	K7P7G7	Enterobacteria_phage	100.0	4.8e-61
VDL24455.1|2149917_2150673_+	hypothetical protein	NA	K7PGX3	Enterobacteria_phage	99.6	8.7e-148
VDL24460.1|2150674_2151406_+	hypothetical protein	NA	K7PM21	Enterobacteria_phage	100.0	3.7e-151
VDL24464.1|2151393_2151984_+	hypothetical protein	NA	K7PHE5	Enterobacteria_phage	100.0	3.5e-104
VDL24467.1|2152036_2156494_+	hypothetical protein	NA	K7PKR4	Enterobacteria_phage	71.2	0.0e+00
VDL24470.1|2156495_2156798_+	hypothetical protein	NA	K7PJT3	Enterobacteria_phage	100.0	5.7e-50
VDL24473.1|2156797_2157472_+	hypothetical protein	NA	K7PGX6	Enterobacteria_phage	99.6	1.5e-122
VDL24476.1|2157550_2157835_-	hypothetical protein	NA	NA	NA	NA	NA
VDL24479.1|2157880_2159170_+	hypothetical protein	NA	K7PH95	Enterobacterial_phage	53.9	1.5e-118
VDL24483.1|2159154_2159883_-	hypothetical protein	NA	K7PM75	Enterobacteria_phage	50.0	1.6e-50
VDL24486.1|2159928_2160477_+	DNA-invertase hin	NA	K7PGS7	Enterobacteria_phage	97.3	9.0e-94
2160598:2160614	attR	AGAACACTTTCTTAAAT	NA	NA	NA	NA
>prophage 7
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	2484145	2535107	5009390	protease	Enterobacteria_phage(46.34%)	56	NA	NA
VDL25409.1|2484145_2486002_-	hypothetical protein	NA	X2KTY7	Enterobacteria_phage	61.2	1.4e-05
VDL25412.1|2486138_2486876_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25415.1|2487437_2488037_-	Outer membrane protein X	NA	A0A0P0ZCF6	Stx2-converting_phage	97.0	3.7e-109
VDL25419.1|2488103_2491502_-	hypothetical protein	NA	K7PKJ2	Enterobacteria_phage	88.0	0.0e+00
VDL25423.1|2491562_2492111_-	hypothetical protein	NA	A0A291AWV5	Escherichia_phage	100.0	1.1e-94
VDL25426.1|2492107_2492707_-	hypothetical protein	NA	A0A291AWX4	Escherichia_phage	99.0	5.5e-121
VDL25428.1|2492855_2493554_-	hypothetical protein	NA	A5LH40	Enterobacteria_phage	98.3	5.6e-133
VDL25430.1|2493563_2493893_-	hypothetical protein	NA	A5LH39	Enterobacteria_phage	100.0	1.7e-60
VDL25433.1|2493892_2496958_-	hypothetical protein	NA	A0A291AWX1	Escherichia_phage	99.4	0.0e+00
VDL25435.1|2496929_2497259_-	hypothetical protein	NA	A5LH37	Enterobacteria_phage	100.0	7.6e-56
VDL25438.1|2497267_2497654_-	hypothetical protein	NA	K7PLV8	Enterobacteria_phage	100.0	3.3e-66
VDL25441.1|2497714_2498458_-	hypothetical protein	NA	A0A291AWU6	Escherichia_phage	99.6	3.0e-132
VDL25444.1|2498469_2498871_-	hypothetical protein	NA	A0A291AWY2	Escherichia_phage	100.0	8.3e-73
VDL25450.1|2498867_2499446_-	hypothetical protein	NA	A5LH33	Enterobacteria_phage	99.5	7.2e-102
VDL25454.1|2499457_2499733_-	hypothetical protein	NA	K7PH43	Enterobacteria_phage	100.0	2.3e-45
VDL25457.1|2499725_2500049_-	hypothetical protein	NA	K7PLV6	Enterobacteria_phage	100.0	8.5e-52
VDL25460.1|2500135_2502163_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A291AWT6	Escherichia_phage	99.7	0.0e+00
VDL25463.1|2502140_2503616_-	hypothetical protein	NA	A5LH29	Enterobacteria_phage	99.2	2.0e-281
VDL25466.1|2503615_2503828_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
VDL25469.1|2503824_2505924_-	hypothetical protein	NA	A5LH27	Enterobacteria_phage	97.1	0.0e+00
VDL25472.1|2505932_2506460_-	hypothetical protein	NA	A5LH26	Enterobacteria_phage	100.0	2.1e-92
VDL25474.1|2507020_2507227_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	77.9	7.6e-22
VDL25477.1|2508242_2508707_-	hypothetical protein	NA	A0A0K2FJD0	Enterobacteria_phage	83.6	1.7e-61
VDL25480.1|2509005_2509539_-	Lysozyme RrrD	NA	Q08J98	Stx2-converting_phage	95.5	1.7e-97
VDL25483.1|2509594_2509909_-	hypothetical protein	NA	K7PGU6	Enterobacteria_phage	97.1	9.1e-51
VDL25486.1|2509913_2510129_-	hypothetical protein	NA	A5LH82	Enterobacteria_phage	95.8	5.9e-33
VDL25491.1|2510380_2510776_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25494.1|2510926_2511355_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25497.1|2512747_2513569_-	Chaperone protein DnaJ	NA	K7PKS8	Enterobacteria_phage	54.0	5.9e-81
VDL25500.1|2513565_2513940_-	Crossover junction endodeoxyribonuclease RusA	NA	V5URS4	Shigella_phage	62.7	8.4e-35
VDL25502.1|2513952_2515002_-	hypothetical protein	NA	U5P0K4	Shigella_phage	54.9	5.0e-109
VDL25505.1|2515348_2515600_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25508.1|2515816_2516029_-	hypothetical protein	NA	A0A0U2QV81	Escherichia_phage	95.7	3.9e-29
VDL25511.1|2517072_2517837_-	hypothetical protein	NA	D0UIM0	Aggregatibacter_phage	36.9	3.8e-34
VDL25514.1|2518099_2518417_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25517.1|2518708_2519164_-	hypothetical protein	NA	A0A0U2QQN3	Escherichia_phage	93.4	3.6e-64
VDL25520.1|2519204_2520170_-	hypothetical protein	NA	U5P0A0	Shigella_phage	59.6	2.5e-54
VDL25522.1|2520150_2520672_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25526.1|2520655_2520883_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25528.1|2520963_2521371_+	hypothetical protein	NA	I6PD69	Cronobacter_phage	51.9	7.2e-32
VDL25531.1|2521539_2521692_+	hypothetical protein	NA	M4QQ57	Salicola_phage	53.2	6.6e-07
VDL25534.1|2521703_2522069_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25538.1|2522739_2522928_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25541.1|2522924_2523116_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25544.1|2523209_2525537_+	Exodeoxyribonuclease 8	NA	A0A0U2I1R6	Escherichia_phage	44.3	5.6e-44
VDL25547.1|2525769_2526006_+	hypothetical protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VDL25551.1|2526040_2527321_+	Putative defective protein IntQ	NA	B6DZ48	Enterobacteria_phage	62.3	8.6e-156
VDL25555.1|2527340_2527451_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25557.1|2527508_2528528_-	Starvation-sensing protein RspB	NA	E3SJ82	Synechococcus_phage	25.9	9.7e-17
VDL25559.1|2528539_2529754_-	Starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
VDL25562.1|2529959_2530286_-	hypothetical protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VDL25565.1|2530420_2530762_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25568.1|2530796_2531357_+	Spermidine N(1)-acetyltransferase	NA	NA	NA	NA	NA
VDL25572.1|2531359_2532106_-	hypothetical protein	NA	NA	NA	NA	NA
VDL25576.1|2532177_2532483_+	hypothetical protein	NA	NA	NA	NA	NA
VDL25579.1|2532680_2535107_+	Putative dimethyl sulfoxide reductase chain YnfE	NA	A0A077SK27	Escherichia_phage	49.1	7.7e-214
>prophage 8
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	2951381	3033762	5009390	transposase	Escherichia_phage(21.74%)	89	NA	NA
VDL27154.1|2951381_2952233_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	99.0	1.7e-112
VDL27159.1|2952229_2952751_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A2I6AZV8	Macacine_betaherpesvirus	100.0	2.7e-92
VDL27163.1|2952924_2954331_+	Invasin	NA	NA	NA	NA	NA
VDL27167.1|2954940_2955645_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27171.1|2955959_2957276_+	Inner membrane metabolite transport protein YhjE	NA	NA	NA	NA	NA
VDL27175.1|2957377_2958832_+	AMP nucleosidase	NA	NA	NA	NA	NA
VDL27179.1|2959171_2959888_+	putative transcriptional regulatory protein	NA	NA	NA	NA	NA
VDL27183.1|2960513_2961272_-	putative FMN/FAD exporter YeeO	NA	NA	NA	NA	NA
VDL27185.1|2961252_2961966_-	putative FMN/FAD exporter YeeO	NA	NA	NA	NA	NA
VDL27189.1|2962271_2963222_-	HTH-type transcriptional regulator cbl	NA	NA	NA	NA	NA
VDL27193.1|2963323_2964241_-	HTH-type transcriptional regulator GltC	NA	NA	NA	NA	NA
VDL27197.1|2964697_2965633_-	putative L,D-transpeptidase ErfK/SrfK	NA	NA	NA	NA	NA
VDL27203.1|2965694_2966774_-	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
VDL27208.1|2966785_2967529_-	Adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
VDL27213.1|2967525_2968068_-	Bifunctional adenosylcobalamin biosynthesis protein CobU	NA	NA	NA	NA	NA
VDL27215.1|2969650_2970382_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0I4A4	Acinetobacter_phage	39.4	1.8e-36
VDL27219.1|2970378_2970678_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27222.1|2970764_2971595_+	Phosphotriesterase homology protein	NA	NA	NA	NA	NA
VDL27226.1|2972246_2972522_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27231.1|2972731_2973106_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27233.1|2973918_2974323_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27237.1|2974508_2975477_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27241.1|2975486_2975879_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27244.1|2976044_2976614_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27248.1|2977806_2978073_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27252.1|2978213_2978420_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27257.1|2978514_2979117_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27261.1|2979632_2979761_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27265.1|2980316_2981234_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27269.1|2981318_2982191_+	GTPase Era	NA	NA	NA	NA	NA
VDL27273.1|2982562_2985406_+	Antigen 43	NA	NA	NA	NA	NA
VDL27278.1|2985440_2985629_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27283.1|2985783_2986269_+	hypothetical protein	NA	A0A1S6UA20	Serratia_phage	50.0	1.5e-28
VDL27287.1|2986214_2986601_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27291.1|2986600_2987029_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27295.1|2986979_2987417_+	Antirestriction protein KlcA	NA	A9J566	Pseudomonas_phage	30.9	1.4e-12
VDL27299.1|2987429_2987906_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27303.1|2987968_2988190_+	hypothetical protein	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
VDL27307.1|2988189_2988303_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27311.1|2988426_2988720_+	Cytoskeleton bundling-enhancing protein CbeA	NA	NA	NA	NA	NA
VDL27315.1|2988809_2989184_+	Cytoskeleton-binding toxin CbtA	NA	NA	NA	NA	NA
VDL27320.1|2989180_2989387_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27324.1|2989770_2990112_-	Insertion sequence IS5376 putative ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	36.3	6.5e-10
VDL27328.1|2990151_2990523_-	Insertion sequence IS5376 putative ATP-binding protein	NA	NA	NA	NA	NA
VDL27333.1|2990537_2992073_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	K4I413	Acidithiobacillus_phage	46.3	3.5e-127
VDL27338.1|2993649_2993916_+	Propanediol utilization protein PduV	NA	NA	NA	NA	NA
VDL27343.1|2994016_2994346_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27345.1|2994517_2995576_-	Inner membrane protein YeeA	NA	NA	NA	NA	NA
VDL27351.1|2995774_2996248_-	DNA gyrase inhibitor	NA	NA	NA	NA	NA
VDL27355.1|2996365_2997532_-	VanY-D_2_AF175293	NA	B6DZZ7	Stx2-converting_phage	99.5	2.2e-227
VDL27357.1|2997740_2999168_+	Exodeoxyribonuclease I	NA	NA	NA	NA	NA
VDL27362.1|2999210_2999438_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27366.1|2999451_3000456_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27371.1|3000683_3002042_-	Low-affinity putrescine importer PlaP	NA	NA	NA	NA	NA
VDL27375.1|3002308_3003238_-	HTH-type transcriptional regulator YhaJ	NA	NA	NA	NA	NA
VDL27379.1|3003283_3004108_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27384.1|3004190_3004445_-	Toxin YoeB	NA	NA	NA	NA	NA
VDL27388.1|3004441_3004693_-	Antitoxin YefM	NA	NA	NA	NA	NA
VDL27392.1|3005171_3006071_+	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
VDL27397.1|3006076_3007381_+	Histidinol dehydrogenase	NA	NA	NA	NA	NA
VDL27402.1|3007377_3008448_+	Histidinol-phosphate aminotransferase	NA	NA	NA	NA	NA
VDL27407.1|3008447_3009515_+	Histidine biosynthesis bifunctional protein HisB	NA	NA	NA	NA	NA
VDL27412.1|3009514_3010105_+	Imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
VDL27417.1|3010104_3010842_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA	NA
VDL27421.1|3010823_3011600_+	Imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
VDL27423.1|3011593_3012202_+	Phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA	NA
VDL27427.1|3012240_3013065_-	Alpha-D-kanosaminyltransferase	NA	NA	NA	NA	NA
VDL27431.1|3013365_3014238_-	Alpha-maltose-1-phosphate synthase	NA	NA	NA	NA	NA
VDL27435.1|3014331_3014607_+	hypothetical protein	NA	Q71TE9	Escherichia_phage	96.7	1.1e-44
VDL27441.1|3014729_3015029_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	U5P0U6	Shigella_phage	100.0	5.6e-50
VDL27447.1|3015165_3015669_-	UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase	NA	NA	NA	NA	NA
VDL27451.1|3015742_3015949_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27458.1|3015997_3016828_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	S5WIU1	Leptospira_phage	42.8	1.3e-51
VDL27462.1|3016854_3017118_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27466.1|3019723_3019852_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27471.1|3020969_3021221_-	hypothetical protein	NA	NA	NA	NA	NA
VDL27476.1|3022492_3023617_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	28.4	1.6e-28
VDL27480.1|3023698_3024187_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A077SK28	Escherichia_phage	98.0	3.5e-81
VDL27484.1|3024542_3024818_+	hypothetical protein	NA	Q71TE9	Escherichia_phage	98.9	2.0e-46
VDL27488.1|3024862_3025240_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
VDL27493.1|3025255_3025423_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27498.1|3025432_3026410_-	Chain length determinant protein	NA	NA	NA	NA	NA
VDL27501.1|3026556_3027723_-	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	54.2	5.2e-115
VDL27504.1|3027971_3029378_-	6-phosphogluconate dehydrogenase, decarboxylating	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	1.8e-37
VDL27509.1|3029531_3030035_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL27514.1|3030098_3030398_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	U5P0U6	Shigella_phage	99.0	2.8e-49
VDL27518.1|3030520_3030796_-	hypothetical protein	NA	Q71TE9	Escherichia_phage	98.9	2.0e-46
VDL27522.1|3031299_3032193_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
VDL27526.1|3032367_3033762_-	hypothetical protein	NA	A0A291LBB9	Klebsiella_phage	32.3	1.7e-19
>prophage 9
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	3125916	3135358	5009390		Enterobacteria_phage(85.71%)	10	NA	NA
VDL27848.1|3125916_3127053_+	hypothetical protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
VDL27855.1|3127049_3129050_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	95.8	0.0e+00
VDL27860.1|3129174_3129636_+	putative lipoprotein YehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VDL27865.1|3129676_3130147_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VDL27869.1|3130193_3130913_-	VanR-B_1_AF192329	NA	NA	NA	NA	NA
VDL27873.1|3130909_3132595_-	Sensor histidine kinase YehU	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VDL27877.1|3132816_3133548_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VDL27881.1|3133607_3133715_+	hypothetical protein	NA	NA	NA	NA	NA
VDL27883.1|3133695_3134427_-	Glycine betaine uptake system permease protein YehW	NA	NA	NA	NA	NA
VDL27888.1|3134431_3135358_-	ole(C)_1_L06249	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
>prophage 10
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	3322670	3437070	5009390	tRNA,transposase,integrase	Stx2-converting_phage(19.05%)	106	3317440:3317456	3377528:3377544
3317440:3317456	attL	TCATGTTTATGCTGGTG	NA	NA	NA	NA
VDL28564.1|3322670_3323573_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	Q2A0A7	Sodalis_phage	44.5	8.2e-68
VDL28568.1|3323769_3324543_-	ole(C)_1_L06249	NA	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	28.2	2.1e-08
VDL28572.1|3324550_3325267_-	Histidine transport system permease protein HisM	NA	NA	NA	NA	NA
VDL28577.1|3325263_3325950_-	Histidine transport system permease protein HisQ	NA	NA	NA	NA	NA
VDL28582.1|3326039_3326822_-	Histidine-binding periplasmic protein	NA	NA	NA	NA	NA
VDL28587.1|3327042_3327825_-	Lysine/arginine/ornithine-binding periplasmic protein	NA	NA	NA	NA	NA
VDL28591.1|3328090_3328660_-	Flavin prenyltransferase UbiX	NA	NA	NA	NA	NA
VDL28595.1|3328754_3330272_-	Amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	44.0	5.9e-87
VDL28597.1|3330308_3330797_-	Colicin V production protein	NA	NA	NA	NA	NA
VDL28601.1|3331055_3331718_-	Cell division protein DedD	NA	NA	NA	NA	NA
VDL28605.1|3331707_3332976_-	Dihydrofolate synthase/folylpolyglutamate synthase	NA	NA	NA	NA	NA
VDL28609.1|3333045_3333960_-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
VDL28614.1|3334115_3334775_-	putative membrane protein	NA	NA	NA	NA	NA
VDL28619.1|3334857_3335670_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
VDL28623.1|3335669_3336683_-	USG-1 protein	NA	NA	NA	NA	NA
VDL28627.1|3336748_3337885_-	VanH-Pt_5_DQ018711	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	5.9e-23
VDL28631.1|3337983_3338979_+	Flagellar regulator flk	NA	NA	NA	NA	NA
VDL28636.1|3338975_3340154_-	putative galactarate transporter	NA	NA	NA	NA	NA
VDL28638.1|3340437_3341658_-	3-oxoacyl-[acyl-carrier-protein] synthase 1	NA	NA	NA	NA	NA
VDL28643.1|3341816_3343823_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	tRNA	NA	NA	NA	NA
VDL28647.1|3343943_3344222_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28650.1|3344255_3344804_-	Elongation factor P hydroxylase	NA	NA	NA	NA	NA
VDL28655.1|3344803_3345613_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28660.1|3345612_3346437_-	Penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
VDL28664.1|3346440_3347526_-	Chorismate synthase	NA	A0A291AU41	Pandoravirus	48.4	9.1e-90
VDL28668.1|3347560_3348493_-	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA	NA
VDL28672.1|3348658_3349210_+	Endonuclease MutS2	NA	NA	NA	NA	NA
VDL28676.1|3349282_3350137_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28680.1|3350138_3350678_-	putative fimbrial-like protein YfcP	NA	NA	NA	NA	NA
VDL28684.1|3350674_3351163_-	putative fimbrial-like protein YfcQ	NA	NA	NA	NA	NA
VDL28688.1|3351159_3351669_-	putative fimbrial-like protein YfcR	NA	NA	NA	NA	NA
VDL28693.1|3351684_3352437_-	putative fimbrial chaperone YfcS	NA	NA	NA	NA	NA
VDL28698.1|3352456_3355099_-	Outer membrane usher protein PapC	NA	NA	NA	NA	NA
VDL28702.1|3355180_3355744_-	putative fimbrial-like protein YfcV	NA	NA	NA	NA	NA
VDL28706.1|3356413_3356899_-	Phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
VDL28710.1|3357101_3359246_-	Fatty acid oxidation complex subunit alpha	NA	NA	NA	NA	NA
VDL28715.1|3359245_3360556_-	3-ketoacyl-CoA thiolase	NA	NA	NA	NA	NA
VDL28720.1|3360735_3361020_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28724.1|3361391_3362732_+	Long-chain fatty acid transport protein	NA	NA	NA	NA	NA
VDL28728.1|3363097_3363277_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28732.1|3363480_3364203_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28736.1|3364334_3365090_-	putative phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
VDL28740.1|3365384_3366317_+	Inner membrane protein YfdC	NA	E7DYY8	Enterobacteria_phage	99.7	4.6e-167
VDL28745.1|3366642_3367833_+|integrase	Prophage integrase IntS	integrase	Q7M297	Enterobacteria_phage	57.3	7.6e-130
VDL28750.1|3369090_3369246_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28754.1|3369242_3369767_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	U5P429	Shigella_phage	51.2	1.7e-46
VDL28758.1|3369705_3370086_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28762.1|3370082_3370382_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28766.1|3370558_3372919_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28771.1|3373562_3374579_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28777.1|3375060_3377259_-	RNA helicase CrhR	NA	NA	NA	NA	NA
VDL28782.1|3377255_3378572_-	hypothetical protein	NA	NA	NA	NA	NA
3377528:3377544	attR	CACCAGCATAAACATGA	NA	NA	NA	NA
VDL28785.1|3378575_3380882_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28790.1|3381350_3381509_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28795.1|3382117_3382411_+	Insertion sequence IS5376 putative ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	99.0	1.2e-47
VDL28799.1|3383154_3384444_+	Hexuronate transporter	NA	NA	NA	NA	NA
VDL28803.1|3384415_3385441_+	putative zinc-type alcohol dehydrogenase-like protein YjmD	NA	NA	NA	NA	NA
VDL28807.1|3385996_3386803_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	8.3e-64
VDL28812.1|3386838_3387141_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28817.1|3388000_3388483_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	F6MIM4	Haemophilus_phage	67.9	1.4e-10
VDL28822.1|3388479_3388668_+|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28826.1|3388967_3389708_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A218MNE7	uncultured_virus	42.3	5.5e-46
VDL28830.1|3389714_3390632_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28834.1|3390706_3391045_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
VDL28838.1|3391038_3391326_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28842.1|3392086_3392446_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28846.1|3392493_3393165_+	Putative L-lactate dehydrogenase operon regulatory protein	NA	NA	NA	NA	NA
VDL28852.1|3393378_3393633_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZEB3	Stx2-converting_phage	64.6	1.3e-15
VDL28857.1|3393583_3394684_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZEB3	Stx2-converting_phage	52.5	3.9e-96
VDL28861.1|3394703_3395051_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
VDL28865.1|3395050_3395698_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	2.4e-21
VDL28869.1|3395887_3396178_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28874.1|3396917_3397103_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28879.1|3397578_3399186_+	Ribulokinase	NA	NA	NA	NA	NA
VDL28884.1|3399203_3400859_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28888.1|3401001_3402456_+	Arabinose-proton symporter	NA	NA	NA	NA	NA
VDL28891.1|3402513_3403617_+	L-talarate/galactarate dehydratase	NA	NA	NA	NA	NA
VDL28895.1|3403640_3404468_+	Dihydroanticapsin 7-dehydrogenase	NA	A0A167REC2	Powai_lake_megavirus	29.2	5.3e-05
VDL28899.1|3404461_3405367_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
VDL28904.1|3405359_3405788_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28909.1|3405836_3406865_-	Catabolite repressor/activator	NA	NA	NA	NA	NA
VDL28913.1|3407421_3407973_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28916.1|3408679_3409198_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28920.1|3409264_3409366_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28924.1|3409556_3409760_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28928.1|3410068_3410494_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28932.1|3410490_3410874_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28937.1|3411245_3411845_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28941.1|3413288_3414080_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28944.1|3414463_3414670_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28948.1|3414763_3415366_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28952.1|3417358_3418507_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28957.1|3419317_3420253_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28961.1|3420249_3422562_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28965.1|3422866_3423469_-	Tyrosine recombinase XerC	NA	A0A1V0E036	Clostridioides_phage	33.3	1.8e-07
VDL28971.1|3423867_3424968_+	hypothetical protein	NA	NA	NA	NA	NA
VDL28976.1|3425264_3425699_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28981.1|3425707_3428014_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28986.1|3428109_3428721_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28990.1|3428732_3429392_-	hypothetical protein	NA	NA	NA	NA	NA
VDL28994.1|3429995_3430868_+	GTPase Era	NA	NA	NA	NA	NA
VDL28998.1|3431240_3434087_+	Antigen 43	NA	NA	NA	NA	NA
VDL29002.1|3434414_3434699_+	hypothetical protein	NA	A0A1S6UA20	Serratia_phage	52.6	1.2e-14
VDL29006.1|3434769_3435516_-	Insertion sequence IS5376 putative ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
VDL29011.1|3435530_3436847_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	K4I413	Acidithiobacillus_phage	47.6	2.0e-115
VDL29016.1|3436917_3437070_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	NA	NA	NA	NA
>prophage 11
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	3708164	3715574	5009390	transposase,integrase	Escherichia_phage(75.0%)	9	3705952:3705965	3713061:3713074
3705952:3705965	attL	CGACTATTTGAACT	NA	NA	NA	NA
VDL30304.1|3708164_3708647_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
VDL30309.1|3708822_3708948_+	hypothetical protein	NA	NA	NA	NA	NA
VDL30314.1|3709389_3710619_+|integrase	Prophage integrase IntA	integrase	A0A1B5FPC6	Escherichia_phage	100.0	1.5e-234
VDL30320.1|3710657_3711167_+	hypothetical protein	NA	A0A1B5FPM5	Escherichia_phage	100.0	3.1e-72
VDL30325.1|3711142_3711727_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	100.0	1.4e-108
VDL30329.1|3711675_3712890_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	99.7	5.0e-222
VDL30334.1|3712891_3713326_-	Sensor histidine kinase TmoS	NA	A0A1B5FPD5	Escherichia_phage	99.3	1.1e-78
3713061:3713074	attR	AGTTCAAATAGTCG	NA	NA	NA	NA
VDL30339.1|3713881_3714607_-	hypothetical protein	NA	A0A1B5FPD5	Escherichia_phage	98.7	1.1e-110
VDL30342.1|3714758_3715574_-|transposase	Putative transposase (identified by ISEscan HMM)	transposase	U5P429	Shigella_phage	41.5	1.8e-50
>prophage 12
LR130532	Escherichia coli isolate ecoli019 genome assembly, chromosome: 0	5009390	3788382	3795522	5009390		Escherichia_phage(83.33%)	6	NA	NA
VDL30749.1|3788382_3790944_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
VDL30755.1|3791049_3791706_+	Serine/threonine-protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.7	2.8e-49
VDL30761.1|3791756_3792524_-	Glucitol operon repressor	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
VDL30766.1|3792719_3793628_+	2-hydroxy-3-oxopropionate reductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
VDL30771.1|3793624_3794887_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.4	5.7e-136
VDL30777.1|3794883_3795522_+	L-fuculose phosphate aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
