assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	1	3029262-3029421	1	CRISPRCasFinder	no		DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	ACCCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCCCTTCAAAACGCATGCG	51	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|198aa|up_9|LR130527.1_3018592_3019186_-	PRK10739, PRK10739, YhgN family NAAT transporter	NA|672aa|up_8|LR130527.1_3019303_3021319_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|293aa|up_7|LR130527.1_3021315_3022194_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|212aa|up_6|LR130527.1_3022209_3022845_-	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|202aa|up_5|LR130527.1_3023012_3023618_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|98aa|up_4|LR130527.1_3023663_3023957_-	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|216aa|up_3|LR130527.1_3024140_3024788_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|914aa|up_2|LR130527.1_3025051_3027793_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|97aa|up_1|LR130527.1_3027870_3028161_+	pfam11191, DUF2782, Protein of unknown function (DUF2782)	NA|317aa|up_0|LR130527.1_3028194_3029145_+	PRK05231, PRK05231, homoserine kinase; Provisional	NA|230aa|down_0|LR130527.1_3029433_3030123_-	COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]	NA|735aa|down_1|LR130527.1_3030139_3032344_-	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	NA|308aa|down_2|LR130527.1_3032453_3033377_-	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	NA|168aa|down_3|LR130527.1_3033446_3033950_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|270aa|down_4|LR130527.1_3033949_3034759_+	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|263aa|down_5|LR130527.1_3034751_3035540_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|264aa|down_6|LR130527.1_3035578_3036370_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|336aa|down_7|LR130527.1_3036576_3037584_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|226aa|down_8|LR130527.1_3037583_3038261_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|261aa|down_9|LR130527.1_3038337_3039120_+	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	2	3460387-3460500	2	CRISPRCasFinder	no		DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	GGCCAAAGAACTGGAGGGCAAGGTATGA	28	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA|168aa|down_2|LR130527.1_3465072_3465576_-,NA|251aa|down_5|LR130527.1_3467329_3468082_-,NA|185aa|down_7|LR130527.1_3468850_3469405_-,NA|30aa|down_8|LR130527.1_3469467_3469557_+	NA|293aa|up_9|LR130527.1_3447237_3448116_-	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|222aa|up_8|LR130527.1_3448276_3448942_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|354aa|up_7|LR130527.1_3449002_3450064_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|459aa|up_6|LR130527.1_3450319_3451696_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|251aa|up_5|LR130527.1_3451974_3452727_+	pfam07722, Peptidase_C26, Peptidase C26	NA|453aa|up_4|LR130527.1_3452767_3454126_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|457aa|up_3|LR130527.1_3454191_3455562_+	PRK07480, PRK07480, putative aminotransferase; Validated	NA|368aa|up_2|LR130527.1_3455677_3456781_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|366aa|up_1|LR130527.1_3457199_3458297_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|385aa|up_0|LR130527.1_3458351_3459506_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|796aa|down_0|LR130527.1_3461543_3463931_-	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only]	NA|351aa|down_1|LR130527.1_3464041_3465094_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|168aa|down_2|LR130527.1_3465072_3465576_-	NA	NA|192aa|down_3|LR130527.1_3465680_3466256_-	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs	NA|314aa|down_4|LR130527.1_3466368_3467310_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|251aa|down_5|LR130527.1_3467329_3468082_-	NA	NA|210aa|down_6|LR130527.1_3468199_3468829_+	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|185aa|down_7|LR130527.1_3468850_3469405_-	NA	NA|30aa|down_8|LR130527.1_3469467_3469557_+	NA	NA|165aa|down_9|LR130527.1_3469670_3470165_+	COG1683, COG1683, Uncharacterized conserved protein [Function unknown]
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	3	4607580-4608567	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	GTTCACTGCCGTACAGGCAGCTAAGAAA,GTTCACTGCCGTATAGGCAGCTAAGAAA,GTTCACTGCCGTANAGGCAGCTAAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	16,16,16	16	Orphan	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|105aa|up_0|LR130527.1_4606993_4607308_+,NA|141aa|down_2|LR130527.1_4610602_4611025_-,NA|59aa|down_7|LR130527.1_4614203_4614380_-	NA|329aa|up_9|LR130527.1_4596713_4597700_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|110aa|up_8|LR130527.1_4597716_4598046_-	pfam06942, GlpM, GlpM protein	NA|513aa|up_7|LR130527.1_4598178_4599717_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|252aa|up_6|LR130527.1_4599994_4600750_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|506aa|up_5|LR130527.1_4600955_4602473_-	PRK00047, glpK, glycerol kinase GlpK	NA|280aa|up_4|LR130527.1_4602512_4603352_-	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|157aa|up_3|LR130527.1_4603616_4604087_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|495aa|up_2|LR130527.1_4604150_4605635_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|262aa|up_1|LR130527.1_4605830_4606616_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|105aa|up_0|LR130527.1_4606993_4607308_+	NA	NA|103aa|down_0|LR130527.1_4609021_4609330_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|274aa|down_1|LR130527.1_4609362_4610184_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|141aa|down_2|LR130527.1_4610602_4611025_-	NA	NA|177aa|down_3|LR130527.1_4611124_4611655_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|66aa|down_4|LR130527.1_4611837_4612035_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|213aa|down_5|LR130527.1_4612013_4612652_-	PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR; Provisional	NA|393aa|down_6|LR130527.1_4613017_4614196_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|59aa|down_7|LR130527.1_4614203_4614380_-	NA	NA|308aa|down_8|LR130527.1_4614506_4615430_-	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|498aa|down_9|LR130527.1_4615561_4617055_+	TIGR01722, Methylmalonate-semialdehyde_dehydrogenase, methylmalonic acid semialdehyde dehydrogenase
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	4	4975972-4976073	4	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Unclear	GCGGCGGGTATCGGCGGATAACGCC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|454aa|up_7|LR130527.1_4968097_4969459_-,NA|106aa|down_6|LR130527.1_4982316_4982634_+	NA|286aa|up_9|LR130527.1_4966293_4967151_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|268aa|up_8|LR130527.1_4967290_4968094_-	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|454aa|up_7|LR130527.1_4968097_4969459_-	NA	NA|74aa|up_6|LR130527.1_4969601_4969823_-	COG3205, COG3205, Predicted membrane protein [Function unknown]	NA|286aa|up_5|LR130527.1_4970116_4970974_+	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|104aa|up_4|LR130527.1_4971191_4971503_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|552aa|up_3|LR130527.1_4971499_4973155_+	PRK09395, actP, cation/acetate symporter ActP	NA|600aa|up_2|LR130527.1_4973244_4975044_+	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	DEDDh|209aa|up_1|LR130527.1_4975040_4975667_+	PRK09145, PRK09145, 3'-5' exonuclease	NA|53aa|up_0|LR130527.1_4975775_4975934_+	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|375aa|down_0|LR130527.1_4976208_4977333_+	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown]	NA|89aa|down_1|LR130527.1_4977365_4977632_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|611aa|down_2|LR130527.1_4977913_4979746_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|188aa|down_3|LR130527.1_4979808_4980372_-	PRK10903, PRK10903, peptidylprolyl isomerase A	NA|276aa|down_4|LR130527.1_4980353_4981181_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|310aa|down_5|LR130527.1_4981187_4982117_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|106aa|down_6|LR130527.1_4982316_4982634_+	NA	NA|214aa|down_7|LR130527.1_4982780_4983422_+	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|300aa|down_8|LR130527.1_4983526_4984426_-	pfam00892, EamA, EamA-like transporter family	NA|112aa|down_9|LR130527.1_4984435_4984771_-	PRK10089, PRK10089, chaperone CsaA
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	5	5922545-5923411	5,2	CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	GTTCACTGCCGTATAGGCAGCTAAGAAA,GTTCACTGCCGTATAGGCAGCTAAGAAA	28,28	0	0	NA	NA	I-F:I-F	14,14	14	TypeI-F	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|82aa|up_7|LR130527.1_5902396_5902642_-,NA|266aa|up_1|LR130527.1_5920282_5921080_-,NA|67aa|down_6|LR130527.1_5932836_5933037_-	NA|70aa|up_9|LR130527.1_5901149_5901359_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|335aa|up_8|LR130527.1_5901355_5902360_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|82aa|up_7|LR130527.1_5902396_5902642_-	NA	NA|305aa|up_6|LR130527.1_5902897_5903812_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|338aa|up_5|LR130527.1_5903984_5904998_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|188aa|up_4|LR130527.1_5905077_5905641_-	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|255aa|up_3|LR130527.1_5906284_5907049_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|4343aa|up_2|LR130527.1_5907121_5920150_+	PRK05691, PRK05691, peptide synthase; Validated	NA|266aa|up_1|LR130527.1_5920282_5921080_-	NA	NA|171aa|up_0|LR130527.1_5921637_5922150_-	COG3617, COG3617, Prophage antirepressor [Transcription]	cas6f|188aa|down_0|LR130527.1_5923534_5924098_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|343aa|down_1|LR130527.1_5924101_5925130_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|down_2|LR130527.1_5925140_5926124_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|435aa|down_3|LR130527.1_5926110_5927415_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1077aa|down_4|LR130527.1_5927472_5930703_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|down_5|LR130527.1_5930699_5931674_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|67aa|down_6|LR130527.1_5932836_5933037_-	NA	NA|307aa|down_7|LR130527.1_5933851_5934772_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|473aa|down_8|LR130527.1_5934804_5936223_-	pfam03573, OprD, outer membrane porin, OprD family	NA|227aa|down_9|LR130527.1_5936304_5936985_-	cd01012, YcaC_related, YcaC related amidohydrolases; E
GCA_900618255.1_paerg002	LR130527	Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0	6	5931939-5932566	2,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	GTTCACTGCCGTGTAGGCAGCTAAGAAA,TTTCTTAGCTGCCTACACGGCAGTGAAC,TTTCTTAGCTGCCTACACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	10,10,10	10	TypeI-F	DinG,DEDDh,WYL,csa3,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|266aa|up_7|LR130527.1_5920282_5921080_-,NA|67aa|down_0|LR130527.1_5932836_5933037_-	NA|255aa|up_9|LR130527.1_5906284_5907049_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|4343aa|up_8|LR130527.1_5907121_5920150_+	PRK05691, PRK05691, peptide synthase; Validated	NA|266aa|up_7|LR130527.1_5920282_5921080_-	NA	NA|171aa|up_6|LR130527.1_5921637_5922150_-	COG3617, COG3617, Prophage antirepressor [Transcription]	cas6f|188aa|up_5|LR130527.1_5923534_5924098_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|343aa|up_4|LR130527.1_5924101_5925130_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|up_3|LR130527.1_5925140_5926124_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|435aa|up_2|LR130527.1_5926110_5927415_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1077aa|up_1|LR130527.1_5927472_5930703_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|up_0|LR130527.1_5930699_5931674_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|67aa|down_0|LR130527.1_5932836_5933037_-	NA	NA|307aa|down_1|LR130527.1_5933851_5934772_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|473aa|down_2|LR130527.1_5934804_5936223_-	pfam03573, OprD, outer membrane porin, OprD family	NA|227aa|down_3|LR130527.1_5936304_5936985_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|287aa|down_4|LR130527.1_5937082_5937943_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|313aa|down_5|LR130527.1_5938043_5938982_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|548aa|down_6|LR130527.1_5938985_5940629_-	PRK13272, treA, alpha,alpha-trehalase TreA	NA|142aa|down_7|LR130527.1_5940987_5941413_+	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|440aa|down_8|LR130527.1_5941405_5942725_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|470aa|down_9|LR130527.1_5942903_5944313_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
