assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900608505.1_Chr_1	LR031521	Streptococcus pyogenes strain S119 genome assembly, chromosome: 1	1	819644-819877	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	2,3,3	3	TypeII-C,TypeII-B,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|LR031521.1_809103_809745_+,NA	NA|452aa|up_9|LR031521.1_807614_808970_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|LR031521.1_809103_809745_+	NA	NA|377aa|up_7|LR031521.1_809807_810938_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|LR031521.1_810947_811700_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|LR031521.1_811699_812464_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|LR031521.1_812463_813096_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|LR031521.1_813575_817682_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|LR031521.1_817681_818551_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|LR031521.1_818547_818889_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|LR031521.1_818878_819541_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|66aa|down_0|LR031521.1_819989_820187_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|49aa|down_1|LR031521.1_820250_820397_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_2|LR031521.1_820520_822353_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|294aa|down_3|LR031521.1_822605_823487_+	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|146aa|down_4|LR031521.1_823672_824110_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|LR031521.1_824224_825244_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|LR031521.1_825450_825876_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|LR031521.1_825894_826386_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_8|LR031521.1_826402_827212_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|LR031521.1_827208_828036_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCA_900608505.1_Chr_1	LR031521	Streptococcus pyogenes strain S119 genome assembly, chromosome: 1	2	1014108-1014209	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|LR031521.1_1022039_1022825_+,NA|63aa|down_8|LR031521.1_1024156_1024345_-	NA|83aa|up_9|LR031521.1_1001825_1002074_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|LR031521.1_1002437_1004756_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|LR031521.1_1005284_1006607_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|LR031521.1_1006726_1007962_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|LR031521.1_1008330_1009104_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|LR031521.1_1009473_1010310_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|LR031521.1_1010325_1010955_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|LR031521.1_1010964_1011606_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|LR031521.1_1011711_1012047_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|LR031521.1_1012242_1014057_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|LR031521.1_1014232_1014790_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|LR031521.1_1015007_1016510_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|LR031521.1_1016572_1017586_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|LR031521.1_1017665_1020776_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|LR031521.1_1020960_1021332_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|LR031521.1_1021331_1022030_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|LR031521.1_1022039_1022825_+	NA	NA|205aa|down_7|LR031521.1_1022951_1023566_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|63aa|down_8|LR031521.1_1024156_1024345_-	NA	NA|252aa|down_9|LR031521.1_1024564_1025320_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain
GCA_900608505.1_Chr_1	LR031521	Streptococcus pyogenes strain S119 genome assembly, chromosome: 1	4	1279963-1280257	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C, Type I-U?,Type I-U	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,31	0	0	NA	NA	I-C:I-C:I-C	4,4,4	4	TypeI-C,TypeI-U?,TypeI-U	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|LR031521.1_1269897_1271133_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|LR031521.1_1271406_1272087_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|LR031521.1_1272228_1272702_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|LR031521.1_1272867_1273584_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|LR031521.1_1273597_1274677_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|LR031521.1_1274749_1276483_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|LR031521.1_1276479_1277220_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|LR031521.1_1277307_1278414_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|LR031521.1_1278456_1279080_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|LR031521.1_1279092_1279803_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|LR031521.1_1280405_1280699_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|LR031521.1_1280709_1281735_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|LR031521.1_1281731_1282406_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|LR031521.1_1282407_1283256_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|LR031521.1_1283260_1285156_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|243aa|down_5|LR031521.1_1285155_1285884_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|LR031521.1_1286016_1288425_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|LR031521.1_1288578_1291227_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|LR031521.1_1291228_1291792_-	pfam13238, AAA_18, AAA domain	NA|60aa|down_9|LR031521.1_1291788_1291968_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
