assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900604845.1_TTHNAR1	LR027520	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 4	1	73912-74127	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	Type I-E	CGGTCCATCCCCACACGCGTGGGGA--CTACG,CGGTCCATCCCCACACGCGTGGGGACTACGC,GGTCCATCCCCACACGCGTGGGGACTAC	32,31,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	3,3,3	3	TypeI-E	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	NA,NA|70aa|down_3|LR027520.1_76125_76335_-	NA|96aa|up_9|LR027520.1_66628_66916_+	pfam01527, HTH_Tnp_1, Transposase	NA|280aa|up_8|LR027520.1_66912_67752_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|132aa|up_7|LR027520.1_67891_68287_+	pfam02634, FdhD-NarQ, FdhD/NarQ family	NA|270aa|up_6|LR027520.1_68383_69193_+	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|92aa|up_5|LR027520.1_69442_69718_+	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|319aa|up_4|LR027520.1_69745_70702_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|152aa|up_3|LR027520.1_70701_71157_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|434aa|up_2|LR027520.1_71153_72455_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|229aa|up_1|LR027520.1_72457_73144_+	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|251aa|up_0|LR027520.1_73155_73908_+	pfam03746, LamB_YcsF, LamB/YcsF family	cas2|126aa|down_0|LR027520.1_74185_74563_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|326aa|down_1|LR027520.1_74516_75494_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|212aa|down_2|LR027520.1_75503_76139_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|70aa|down_3|LR027520.1_76125_76335_-	NA	NA|278aa|down_4|LR027520.1_76376_77210_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas5|152aa|down_5|LR027520.1_77219_77675_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|372aa|down_6|LR027520.1_77676_78792_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|171aa|down_7|LR027520.1_78788_79301_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|500aa|down_8|LR027520.1_79297_80797_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|918aa|down_9|LR027520.1_80855_83609_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCA_900604845.1_TTHNAR1	LR027520	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 4	2	84786-85060	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	Type I-E	GTAGTCCCCACATGCGTGGGGATGGACCG,GTAGTCCCCACATGCGTGGGGATGGACCG,GTAGTCCCCACATGCGTGGGGATGGACCG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	4,4,4	4	TypeI-E	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	NA|70aa|up_7|LR027520.1_76125_76335_-,NA|292aa|down_1|LR027520.1_86250_87126_+	cas1|326aa|up_9|LR027520.1_74516_75494_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|212aa|up_8|LR027520.1_75503_76139_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|70aa|up_7|LR027520.1_76125_76335_-	NA	NA|278aa|up_6|LR027520.1_76376_77210_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas5|152aa|up_5|LR027520.1_77219_77675_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|372aa|up_4|LR027520.1_77676_78792_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|171aa|up_3|LR027520.1_78788_79301_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|500aa|up_2|LR027520.1_79297_80797_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|918aa|up_1|LR027520.1_80855_83609_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|330aa|up_0|LR027520.1_83605_84595_-	pfam13280, WYL, WYL domain	NA|315aa|down_0|LR027520.1_85309_86254_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|292aa|down_1|LR027520.1_86250_87126_+	NA	NA|125aa|down_2|LR027520.1_87118_87493_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	TnpB_regular.1|529aa|down_3|LR027520.1_87485_89072_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|277aa|down_4|LR027520.1_89174_90005_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|373aa|down_5|LR027520.1_90038_91157_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|327aa|down_6|LR027520.1_91271_92252_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|411aa|down_7|LR027520.1_92319_93552_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|369aa|down_8|LR027520.1_93599_94706_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|455aa|down_9|LR027520.1_94702_96067_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCA_900604845.1_TTHNAR1	LR027520	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 4	3	310194-310301	3	CRISPRCasFinder	no	cas2,cas1,cas4,WYL,cas8b5,cas7,cas5,cas3,cas6	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	Unclear	GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	36	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	NA|192aa|up_9|LR027520.1_301926_302502_+,NA|66aa|up_8|LR027520.1_302504_302702_+,NA|338aa|up_5|LR027520.1_306081_307095_+,NA|63aa|up_3|LR027520.1_308920_309109_-,NA|77aa|up_2|LR027520.1_309184_309415_+,NA|153aa|down_5|LR027520.1_316385_316844_+,cas8b5|675aa|down_7|LR027520.1_317890_319915_+,cas7|294aa|down_8|LR027520.1_319916_320798_+,cas5|264aa|down_9|LR027520.1_320799_321591_+	NA|192aa|up_9|LR027520.1_301926_302502_+	NA	NA|66aa|up_8|LR027520.1_302504_302702_+	NA	NA|530aa|up_7|LR027520.1_302712_304302_+	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|543aa|up_6|LR027520.1_304409_306038_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|338aa|up_5|LR027520.1_306081_307095_+	NA	NA|552aa|up_4|LR027520.1_307297_308953_+	COG3472, COG3472, Uncharacterized conserved protein [Function unknown]	NA|63aa|up_3|LR027520.1_308920_309109_-	NA	NA|77aa|up_2|LR027520.1_309184_309415_+	NA	NA|138aa|up_1|LR027520.1_309411_309825_+	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|111aa|up_0|LR027520.1_309849_310182_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|175aa|down_0|LR027520.1_310349_310874_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|174aa|down_1|LR027520.1_310870_311392_-	pfam13592, HTH_33, Winged helix-turn helix	cas2|95aa|down_2|LR027520.1_314450_314735_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_3|LR027520.1_314731_315709_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|down_4|LR027520.1_315699_316284_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|153aa|down_5|LR027520.1_316385_316844_+	NA	WYL|333aa|down_6|LR027520.1_316874_317873_+	pfam13280, WYL, WYL domain	cas8b5|675aa|down_7|LR027520.1_317890_319915_+	NA	cas7|294aa|down_8|LR027520.1_319916_320798_+	NA	cas5|264aa|down_9|LR027520.1_320799_321591_+	NA
GCA_900604845.1_TTHNAR1	LR027520	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 4	4	311417-314211	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,WYL,cas8b5,cas7,cas5,cas3,cas6	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	Unclear	GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC,GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC,GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	36,36,36	0	0	NA	NA	NA:NA:NA	38,38,38	38	Unclear	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	NA|338aa|up_7|LR027520.1_306081_307095_+,NA|63aa|up_5|LR027520.1_308920_309109_-,NA|77aa|up_4|LR027520.1_309184_309415_+,NA|153aa|down_3|LR027520.1_316385_316844_+,cas8b5|675aa|down_5|LR027520.1_317890_319915_+,cas7|294aa|down_6|LR027520.1_319916_320798_+,cas5|264aa|down_7|LR027520.1_320799_321591_+	NA|530aa|up_9|LR027520.1_302712_304302_+	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|543aa|up_8|LR027520.1_304409_306038_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|338aa|up_7|LR027520.1_306081_307095_+	NA	NA|552aa|up_6|LR027520.1_307297_308953_+	COG3472, COG3472, Uncharacterized conserved protein [Function unknown]	NA|63aa|up_5|LR027520.1_308920_309109_-	NA	NA|77aa|up_4|LR027520.1_309184_309415_+	NA	NA|138aa|up_3|LR027520.1_309411_309825_+	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|111aa|up_2|LR027520.1_309849_310182_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|175aa|up_1|LR027520.1_310349_310874_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|174aa|up_0|LR027520.1_310870_311392_-	pfam13592, HTH_33, Winged helix-turn helix	cas2|95aa|down_0|LR027520.1_314450_314735_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_1|LR027520.1_314731_315709_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|down_2|LR027520.1_315699_316284_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|153aa|down_3|LR027520.1_316385_316844_+	NA	WYL|333aa|down_4|LR027520.1_316874_317873_+	pfam13280, WYL, WYL domain	cas8b5|675aa|down_5|LR027520.1_317890_319915_+	NA	cas7|294aa|down_6|LR027520.1_319916_320798_+	NA	cas5|264aa|down_7|LR027520.1_320799_321591_+	NA	cas3|818aa|down_8|LR027520.1_321557_324011_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|265aa|down_9|LR027520.1_324010_324805_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCA_900604845.1_TTHNAR1	LR027520	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 4	5	326326-327309	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,WYL,cas8b5,cas7,cas5,cas3,cas6	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	Unclear	GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC,GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC,GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	12,13,13	13	Unclear	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	cas8b5|675aa|up_8|LR027520.1_317890_319915_+,cas7|294aa|up_7|LR027520.1_319916_320798_+,cas5|264aa|up_6|LR027520.1_320799_321591_+,NA|75aa|up_3|LR027520.1_324918_325143_-,NA|56aa|up_0|LR027520.1_325944_326112_-,NA|38aa|down_4|LR027520.1_330704_330818_+,NA|105aa|down_7|LR027520.1_332598_332913_+	WYL|333aa|up_9|LR027520.1_316874_317873_+	pfam13280, WYL, WYL domain	cas8b5|675aa|up_8|LR027520.1_317890_319915_+	NA	cas7|294aa|up_7|LR027520.1_319916_320798_+	NA	cas5|264aa|up_6|LR027520.1_320799_321591_+	NA	cas3|818aa|up_5|LR027520.1_321557_324011_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|265aa|up_4|LR027520.1_324010_324805_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|75aa|up_3|LR027520.1_324918_325143_-	NA	NA|124aa|up_2|LR027520.1_325142_325514_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|101aa|up_1|LR027520.1_325565_325868_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|56aa|up_0|LR027520.1_325944_326112_-	NA	NA|401aa|down_0|LR027520.1_327433_328636_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|107aa|down_1|LR027520.1_328890_329211_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|197aa|down_2|LR027520.1_329203_329794_+	pfam11866, DUF3386, Protein of unknown function (DUF3386)	NA|297aa|down_3|LR027520.1_329817_330708_+	cd01149, HutB, Hemin binding protein HutB	NA|38aa|down_4|LR027520.1_330704_330818_+	NA	NA|342aa|down_5|LR027520.1_330811_331837_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|260aa|down_6|LR027520.1_331829_332609_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|105aa|down_7|LR027520.1_332598_332913_+	NA	NA|305aa|down_8|LR027520.1_332924_333839_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|349aa|down_9|LR027520.1_333835_334882_+	cd14658, Imelysin-like_IrpA, Imelysin-like domain in iron-regulated protein A
GCA_900604845.1_TTHNAR1	LR027519	Thermus thermophilus isolate TTHNAR1 genome assembly, plasmid: 3	1	37314-37444	1	CRISPRCasFinder	no			Orphan	ACACAATGTTGTGCCTGAGCAAATGCTCGGT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,TnpB_regular.1,c2c9_V-U4,cas4,cas8b5,cas6	NA|132aa|up_9|LR027519.1_33144_33540_-,NA|62aa|up_7|LR027519.1_33999_34185_-,NA|54aa|up_6|LR027519.1_34224_34386_-,NA|105aa|up_5|LR027519.1_34529_34844_-,NA|223aa|up_4|LR027519.1_34915_35584_-,NA|85aa|up_3|LR027519.1_35585_35840_-,NA|81aa|up_2|LR027519.1_35890_36133_-,NA|76aa|up_1|LR027519.1_36164_36392_-,NA|329aa|down_0|LR027519.1_37571_38558_-,NA|95aa|down_2|LR027519.1_39599_39884_-,NA|69aa|down_3|LR027519.1_39997_40204_-,NA|104aa|down_4|LR027519.1_40269_40581_+,NA|181aa|down_6|LR027519.1_41295_41838_-,NA|97aa|down_8|LR027519.1_42472_42763_-	NA|132aa|up_9|LR027519.1_33144_33540_-	NA	NA|120aa|up_8|LR027519.1_33589_33949_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|62aa|up_7|LR027519.1_33999_34185_-	NA	NA|54aa|up_6|LR027519.1_34224_34386_-	NA	NA|105aa|up_5|LR027519.1_34529_34844_-	NA	NA|223aa|up_4|LR027519.1_34915_35584_-	NA	NA|85aa|up_3|LR027519.1_35585_35840_-	NA	NA|81aa|up_2|LR027519.1_35890_36133_-	NA	NA|76aa|up_1|LR027519.1_36164_36392_-	NA	NA|157aa|up_0|LR027519.1_36428_36899_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|329aa|down_0|LR027519.1_37571_38558_-	NA	NA|251aa|down_1|LR027519.1_38666_39419_-	pfam04539, Sigma70_r3, Sigma-70 region 3	NA|95aa|down_2|LR027519.1_39599_39884_-	NA	NA|69aa|down_3|LR027519.1_39997_40204_-	NA	NA|104aa|down_4|LR027519.1_40269_40581_+	NA	NA|198aa|down_5|LR027519.1_40705_41299_-	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase	NA|181aa|down_6|LR027519.1_41295_41838_-	NA	NA|223aa|down_7|LR027519.1_41800_42469_-	COG2512, COG2512, Predicted membrane-associated trancriptional regulator    [Transcription]	NA|97aa|down_8|LR027519.1_42472_42763_-	NA	NA|381aa|down_9|LR027519.1_42759_43902_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau
