assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900492145.1_FR5810	LR130529	Bordetella pertussis isolate FR5810 genome assembly, chromosome: I	1	188812-188905	1	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|326aa|up_9|LR130529.1_178915_179893_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_8|LR130529.1_179903_180875_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_7|LR130529.1_180941_181727_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_6|LR130529.1_181719_182952_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|318aa|up_5|LR130529.1_182948_183902_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_4|LR130529.1_184012_184531_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|604aa|up_3|LR130529.1_184527_186339_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|459aa|up_2|LR130529.1_186343_187720_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|LR130529.1_187819_188164_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|LR130529.1_188252_188723_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|LR130529.1_189135_189534_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|318aa|down_1|LR130529.1_189665_190619_-	pfam00665, rve, Integrase core domain	NA|791aa|down_2|LR130529.1_190682_193055_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	DEDDh|245aa|down_3|LR130529.1_193063_193798_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|60aa|down_4|LR130529.1_194207_194387_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|438aa|down_5|LR130529.1_194577_195891_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|502aa|down_6|LR130529.1_195906_197412_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|402aa|down_7|LR130529.1_197414_198620_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|156aa|down_8|LR130529.1_198815_199283_-	pfam00665, rve, Integrase core domain	NA|176aa|down_9|LR130529.1_199269_199797_-	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481
GCA_900492145.1_FR5810	LR130529	Bordetella pertussis isolate FR5810 genome assembly, chromosome: I	2	370277-370361	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|300aa|up_9|LR130529.1_360095_360995_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_8|LR130529.1_361059_362043_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|304aa|up_7|LR130529.1_362247_363159_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_6|LR130529.1_363175_364567_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|155aa|up_5|LR130529.1_364791_365256_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|382aa|up_4|LR130529.1_365425_366571_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_3|LR130529.1_366714_367353_-	PRK10847, PRK10847, DedA family protein	NA|513aa|up_2|LR130529.1_367439_368978_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|136aa|up_1|LR130529.1_368920_369328_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|LR130529.1_369324_370266_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|LR130529.1_370371_371421_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|LR130529.1_371673_372375_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|LR130529.1_372371_373070_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|LR130529.1_373070_374426_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|LR130529.1_374422_374914_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|LR130529.1_374932_375889_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|277aa|down_6|LR130529.1_375915_376746_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|420aa|down_7|LR130529.1_377299_378559_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|280aa|down_8|LR130529.1_378564_379404_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|348aa|down_9|LR130529.1_379574_380618_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold
GCA_900492145.1_FR5810	LR130529	Bordetella pertussis isolate FR5810 genome assembly, chromosome: I	3	1296869-1296978	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|105aa|up_5|LR130529.1_1293239_1293554_+,NA	NA|260aa|up_9|LR130529.1_1289210_1289990_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|up_8|LR130529.1_1290006_1291431_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_7|LR130529.1_1291430_1292132_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|300aa|up_6|LR130529.1_1292325_1293225_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|105aa|up_5|LR130529.1_1293239_1293554_+	NA	NA|209aa|up_4|LR130529.1_1293635_1294262_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|117aa|up_3|LR130529.1_1294234_1294585_+	pfam13683, rve_3, Integrase core domain	NA|327aa|up_2|LR130529.1_1294671_1295652_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|LR130529.1_1295656_1296337_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|LR130529.1_1296474_1296867_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|142aa|down_0|LR130529.1_1297213_1297639_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|98aa|down_1|LR130529.1_1297611_1297905_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|262aa|down_2|LR130529.1_1298234_1299020_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_3|LR130529.1_1299114_1300524_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|257aa|down_4|LR130529.1_1300534_1301305_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_5|LR130529.1_1301357_1302128_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_6|LR130529.1_1302170_1302638_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|117aa|down_7|LR130529.1_1302634_1302985_-	pfam13683, rve_3, Integrase core domain	NA|211aa|down_8|LR130529.1_1302957_1303590_-	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|111aa|down_9|LR130529.1_1305168_1305501_-	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase
GCA_900492145.1_FR5810	LR130529	Bordetella pertussis isolate FR5810 genome assembly, chromosome: I	4	2511845-2511960	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|191aa|up_8|LR130529.1_2505563_2506136_+,NA	NA|393aa|up_9|LR130529.1_2504392_2505571_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|191aa|up_8|LR130529.1_2505563_2506136_+	NA	NA|138aa|up_7|LR130529.1_2506144_2506558_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|239aa|up_6|LR130529.1_2506554_2507271_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|214aa|up_5|LR130529.1_2507263_2507905_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|244aa|up_4|LR130529.1_2507939_2508671_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|71aa|up_3|LR130529.1_2508688_2508901_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|209aa|up_2|LR130529.1_2509471_2510098_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|101aa|up_1|LR130529.1_2510122_2510425_+	pfam13683, rve_3, Integrase core domain	NA|310aa|up_0|LR130529.1_2510825_2511755_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|217aa|down_0|LR130529.1_2511983_2512634_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|304aa|down_1|LR130529.1_2512762_2513674_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|100aa|down_2|LR130529.1_2513667_2513967_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|679aa|down_3|LR130529.1_2514044_2516081_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|164aa|down_4|LR130529.1_2516333_2516825_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|171aa|down_5|LR130529.1_2517040_2517553_+	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|404aa|down_6|LR130529.1_2517570_2518782_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|137aa|down_7|LR130529.1_2518819_2519230_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_8|LR130529.1_2519231_2519555_+	TIGR02011, Protein_yfhF	NA|171aa|down_9|LR130529.1_2519557_2520070_+	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB
GCA_900492145.1_FR5810	LR130529	Bordetella pertussis isolate FR5810 genome assembly, chromosome: I	5	3583238-3583354	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA|422aa|down_1|LR130529.1_3585429_3586695_-	NA|208aa|up_9|LR130529.1_3570881_3571505_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|209aa|up_8|LR130529.1_3571603_3572230_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|117aa|up_7|LR130529.1_3572202_3572553_+	pfam13683, rve_3, Integrase core domain	NA|185aa|up_6|LR130529.1_3572599_3573154_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_5|LR130529.1_3573221_3574067_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|188aa|up_4|LR130529.1_3574136_3574700_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|340aa|up_3|LR130529.1_3575105_3576125_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|281aa|up_2|LR130529.1_3576064_3576907_-	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|538aa|up_1|LR130529.1_3576999_3578613_-	pfam03772, Competence, Competence protein	NA|1234aa|up_0|LR130529.1_3578806_3582508_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|659aa|down_0|LR130529.1_3583465_3585442_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|422aa|down_1|LR130529.1_3585429_3586695_-	NA	NA|276aa|down_2|LR130529.1_3586976_3587804_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_3|LR130529.1_3587837_3588533_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_4|LR130529.1_3588525_3589806_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|244aa|down_5|LR130529.1_3590060_3590792_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|418aa|down_6|LR130529.1_3591222_3592476_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|294aa|down_7|LR130529.1_3592801_3593683_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_8|LR130529.1_3593712_3594468_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|487aa|down_9|LR130529.1_3594474_3595935_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed
