assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478435.1_31701_G01	LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	2	958425-958857	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTGTTCCCCGCGTTAGCGGGGATAAACCG,GTGTTCCCCGCGTTAGCGGGGATAAACCG,GTGTTCCCCGCGTTAGCGGGGATAAACCG	31,29,29	0	0	NA	NA	I-E:I-E:I-E	3,6,4	6	TypeI-E	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|447aa|up_9|LS483495.1_944183_945524_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|159aa|up_8|LS483495.1_945601_946078_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|199aa|up_7|LS483495.1_946145_946742_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|LS483495.1_946814_949571_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|LS483495.1_949628_950924_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|LS483495.1_950975_953210_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|LS483495.1_953284_954076_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LS483495.1_954303_955941_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483495.1_956023_957322_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483495.1_957458_958130_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|237aa|down_0|LS483495.1_959040_959751_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|73aa|down_1|LS483495.1_959983_960202_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483495.1_960629_962429_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483495.1_962428_964141_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483495.1_964156_964891_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483495.1_964978_965932_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|411aa|down_6|LS483495.1_966373_967606_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|92aa|down_7|LS483495.1_967623_967899_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|116aa|down_8|LS483495.1_968021_968369_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|223aa|down_9|LS483495.1_968365_969034_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCA_900478435.1_31701_G01	LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	3	974900-976271	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGNCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	22,22	22	TypeI-E	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	cas3|116aa|up_9|LS483495.1_968021_968369_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|223aa|up_8|LS483495.1_968365_969034_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|370aa|up_7|LS483495.1_969045_970155_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|166aa|up_6|LS483495.1_970124_970622_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|179aa|up_5|LS483495.1_970596_971133_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|LS483495.1_971146_972205_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LS483495.1_972215_972962_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LS483495.1_972943_973594_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LS483495.1_973590_974511_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LS483495.1_974510_974795_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483495.1_976285_977332_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483495.1_977583_978492_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483495.1_978501_979941_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483495.1_979927_980533_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483495.1_980583_980907_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483495.1_981097_981409_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483495.1_981427_982138_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483495.1_982137_982617_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483495.1_982613_983663_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483495.1_983643_984405_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900478435.1_31701_G01	LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4	2095814-2096513	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	Orphan	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|230aa|up_9|LS483495.1_2081512_2082202_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|118aa|up_8|LS483495.1_2082228_2082582_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_7|LS483495.1_2082800_2084183_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_6|LS483495.1_2084183_2084834_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_5|LS483495.1_2084826_2086623_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|466aa|up_4|LS483495.1_2086961_2088359_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|LS483495.1_2088745_2092489_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|LS483495.1_2092485_2094021_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|LS483495.1_2094017_2094728_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|LS483495.1_2094727_2095405_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|LS483495.1_2097428_2098271_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|LS483495.1_2098321_2098780_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|299aa|down_2|LS483495.1_2098899_2099796_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|195aa|down_3|LS483495.1_2099886_2100471_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|152aa|down_4|LS483495.1_2100445_2100901_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|155aa|down_5|LS483495.1_2101103_2101568_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|149aa|down_6|LS483495.1_2101564_2102011_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_7|LS483495.1_2102142_2102556_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_8|LS483495.1_2103219_2103837_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_9|LS483495.1_2104033_2106712_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
GCA_900478435.1_31701_G01	LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	5	2962802-2962891	5	CRISPRCasFinder	no		cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	ATAAGCTATTGTTTTAACTACTAAATC	27	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|80aa|up_8|LS483495.1_2958812_2959052_-,NA|44aa|up_7|LS483495.1_2959048_2959180_-,NA|86aa|up_6|LS483495.1_2959526_2959784_-,NA|43aa|up_5|LS483495.1_2959932_2960061_-,NA|144aa|up_4|LS483495.1_2960133_2960565_+,NA|113aa|up_3|LS483495.1_2960576_2960915_+,NA|68aa|up_2|LS483495.1_2961319_2961523_-,NA|71aa|up_1|LS483495.1_2961721_2961934_+,NA|99aa|down_0|LS483495.1_2963336_2963633_-,NA|237aa|down_1|LS483495.1_2963635_2964346_-,NA|142aa|down_3|LS483495.1_2964886_2965312_-,NA|74aa|down_4|LS483495.1_2965313_2965535_-,NA|146aa|down_5|LS483495.1_2965918_2966356_-,NA|104aa|down_6|LS483495.1_2966356_2966668_-,NA|109aa|down_7|LS483495.1_2967390_2967717_+	NA|710aa|up_9|LS483495.1_2956266_2958396_-	pfam09718, Tape_meas_lam_C, Lambda phage tail tape-measure protein (Tape_meas_lam_C)	NA|80aa|up_8|LS483495.1_2958812_2959052_-	NA	NA|44aa|up_7|LS483495.1_2959048_2959180_-	NA	NA|86aa|up_6|LS483495.1_2959526_2959784_-	NA	NA|43aa|up_5|LS483495.1_2959932_2960061_-	NA	NA|144aa|up_4|LS483495.1_2960133_2960565_+	NA	NA|113aa|up_3|LS483495.1_2960576_2960915_+	NA	NA|68aa|up_2|LS483495.1_2961319_2961523_-	NA	NA|71aa|up_1|LS483495.1_2961721_2961934_+	NA	NA|84aa|up_0|LS483495.1_2962212_2962464_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|99aa|down_0|LS483495.1_2963336_2963633_-	NA	NA|237aa|down_1|LS483495.1_2963635_2964346_-	NA	NA|168aa|down_2|LS483495.1_2964381_2964885_-	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|142aa|down_3|LS483495.1_2964886_2965312_-	NA	NA|74aa|down_4|LS483495.1_2965313_2965535_-	NA	NA|146aa|down_5|LS483495.1_2965918_2966356_-	NA	NA|104aa|down_6|LS483495.1_2966356_2966668_-	NA	NA|109aa|down_7|LS483495.1_2967390_2967717_+	NA	NA|334aa|down_8|LS483495.1_2967709_2968711_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|168aa|down_9|LS483495.1_2968667_2969171_+	pfam13455, MUG113, Meiotically up-regulated gene 113
