assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478405.1_35661_D01	LS483494	Salmonella enterica subsp. enterica serovar Heidelberg strain NCTC5717 genome assembly, chromosome: 1	2	948647-950749	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	33,34,34	34	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|381aa|up_9|LS483494.1_934443_935586_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|LS483494.1_935629_938386_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|LS483494.1_938443_939739_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|LS483494.1_939790_942025_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|96aa|up_5|LS483494.1_942177_942465_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|LS483494.1_942430_942727_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|LS483494.1_943496_944297_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LS483494.1_944524_946162_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483494.1_946244_947543_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483494.1_947678_948350_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LS483494.1_950846_951644_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483494.1_951733_952096_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|260aa|down_2|LS483494.1_952519_953299_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|308aa|down_3|LS483494.1_953396_954320_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|298aa|down_4|LS483494.1_954319_955213_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|258aa|down_5|LS483494.1_955259_956033_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_6|LS483494.1_956108_956843_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|264aa|down_7|LS483494.1_957055_957847_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|67aa|down_8|LS483494.1_957809_958010_-	pfam11047, SopD, Salmonella outer protein D	cas3|888aa|down_9|LS483494.1_958453_961117_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCA_900478405.1_35661_D01	LS483494	Salmonella enterica subsp. enterica serovar Heidelberg strain NCTC5717 genome assembly, chromosome: 1	3	967011-968200	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|67aa|up_9|LS483494.1_957809_958010_-	pfam11047, SopD, Salmonella outer protein D	cas3|888aa|up_8|LS483494.1_958453_961117_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_7|LS483494.1_961128_962685_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_6|LS483494.1_962681_963242_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|89aa|up_5|LS483494.1_963255_963522_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas7|276aa|up_4|LS483494.1_963487_964315_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LS483494.1_964325_965072_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LS483494.1_965053_965704_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LS483494.1_965700_966621_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483494.1_966620_966914_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483494.1_968865_969912_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483494.1_970162_971071_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483494.1_971080_972520_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483494.1_972506_973112_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483494.1_973162_973486_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483494.1_973676_973988_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483494.1_974006_974717_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|158aa|down_7|LS483494.1_974723_975197_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483494.1_975193_976243_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|126aa|down_9|LS483494.1_976223_976601_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900478405.1_35661_D01	LS483494	Salmonella enterica subsp. enterica serovar Heidelberg strain NCTC5717 genome assembly, chromosome: 1	4	968274-968851	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|67aa|up_9|LS483494.1_957809_958010_-	pfam11047, SopD, Salmonella outer protein D	cas3|888aa|up_8|LS483494.1_958453_961117_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_7|LS483494.1_961128_962685_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_6|LS483494.1_962681_963242_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|89aa|up_5|LS483494.1_963255_963522_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas7|276aa|up_4|LS483494.1_963487_964315_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LS483494.1_964325_965072_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LS483494.1_965053_965704_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LS483494.1_965700_966621_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483494.1_966620_966914_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483494.1_968865_969912_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483494.1_970162_971071_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483494.1_971080_972520_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483494.1_972506_973112_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483494.1_973162_973486_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483494.1_973676_973988_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483494.1_974006_974717_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|158aa|down_7|LS483494.1_974723_975197_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483494.1_975193_976243_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|126aa|down_9|LS483494.1_976223_976601_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900478405.1_35661_D01	LS483494	Salmonella enterica subsp. enterica serovar Heidelberg strain NCTC5717 genome assembly, chromosome: 1	5	1159878-1159987	5	CRISPRCasFinder	no		cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	TGTCCCACCCTGTACCACTTTTTTTTAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA|271aa|down_2|LS483494.1_1162790_1163603_+,NA|225aa|down_3|LS483494.1_1164124_1164799_-,NA|213aa|down_4|LS483494.1_1165522_1166161_-,NA|282aa|down_6|LS483494.1_1167869_1168715_+,NA|268aa|down_7|LS483494.1_1168886_1169690_-,NA|217aa|down_8|LS483494.1_1169802_1170453_-	NA|338aa|up_9|LS483494.1_1153458_1154472_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_8|LS483494.1_1154482_1155463_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_7|LS483494.1_1155459_1155834_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_6|LS483494.1_1155830_1156352_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_5|LS483494.1_1156464_1156749_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|90aa|up_4|LS483494.1_1156843_1157113_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|289aa|up_3|LS483494.1_1157353_1158220_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|up_2|LS483494.1_1158216_1158573_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|66aa|up_1|LS483494.1_1158559_1158757_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|80aa|up_0|LS483494.1_1159262_1159502_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|690aa|down_0|LS483494.1_1160004_1162074_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|LS483494.1_1162109_1162325_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|271aa|down_2|LS483494.1_1162790_1163603_+	NA	NA|225aa|down_3|LS483494.1_1164124_1164799_-	NA	NA|213aa|down_4|LS483494.1_1165522_1166161_-	NA	NA|355aa|down_5|LS483494.1_1166343_1167408_-	PRK09692, PRK09692, integrase; Provisional	NA|282aa|down_6|LS483494.1_1167869_1168715_+	NA	NA|268aa|down_7|LS483494.1_1168886_1169690_-	NA	NA|217aa|down_8|LS483494.1_1169802_1170453_-	NA	NA|69aa|down_9|LS483494.1_1171097_1171304_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]
