assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478385.1_29751_F01	LS483489	Salmonella enterica subsp. enterica serovar Poona strain NCTC4840 genome assembly, chromosome: 1	1	630355-630603	1	PILER-CR	no		WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	53	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|55aa|down_8|LS483489.1_642859_643024_-	NA|269aa|up_9|LS483489.1_618574_619381_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|476aa|up_8|LS483489.1_619367_620795_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|305aa|up_7|LS483489.1_620821_621736_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_6|LS483489.1_621746_622601_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|278aa|up_5|LS483489.1_622934_623768_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|316aa|up_4|LS483489.1_623778_624726_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|524aa|up_3|LS483489.1_624965_626537_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|LS483489.1_627066_627837_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|LS483489.1_627862_628753_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|LS483489.1_628850_629996_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|LS483489.1_631349_632288_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|LS483489.1_632385_633375_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|LS483489.1_633395_634727_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|LS483489.1_634793_636002_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|LS483489.1_636035_638330_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|LS483489.1_638399_639764_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|LS483489.1_640079_641411_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|LS483489.1_641436_642747_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|LS483489.1_642859_643024_-	NA	NA|234aa|down_9|LS483489.1_643047_643749_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCA_900478385.1_29751_F01	LS483489	Salmonella enterica subsp. enterica serovar Poona strain NCTC4840 genome assembly, chromosome: 1	2	958985-959318	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	TypeI-E	WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|208aa|up_9|LS483489.1_948099_948723_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|LS483489.1_948780_950076_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LS483489.1_950127_952362_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|96aa|up_6|LS483489.1_952516_952804_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_5|LS483489.1_952769_953066_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|110aa|up_4|LS483489.1_953833_954163_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|167aa|up_3|LS483489.1_954134_954635_+	TIGR00444, Nucleoside_triphosphate_pyrophosphohydrolase, MazG family protein	NA|546aa|up_2|LS483489.1_954862_956500_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483489.1_956582_957881_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483489.1_958016_958688_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LS483489.1_959415_960213_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483489.1_960300_960663_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483489.1_961098_962898_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483489.1_962897_964610_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483489.1_964685_965420_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483489.1_965507_966461_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|LS483489.1_966905_969569_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|273aa|down_7|LS483489.1_969580_970399_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|239aa|down_8|LS483489.1_970421_971138_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|187aa|down_9|LS483489.1_971134_971695_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_900478385.1_29751_F01	LS483489	Salmonella enterica subsp. enterica serovar Poona strain NCTC4840 genome assembly, chromosome: 1	3	975464-977140	3,2,2,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGCA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	31,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	25,27,27,25	27	TypeI-E	WYL,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|888aa|up_9|LS483489.1_966905_969569_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|273aa|up_8|LS483489.1_969580_970399_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|239aa|up_7|LS483489.1_970421_971138_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|187aa|up_6|LS483489.1_971134_971695_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_5|LS483489.1_971708_972767_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_4|LS483489.1_972777_973524_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|154aa|up_3|LS483489.1_973505_973967_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas6e|49aa|up_2|LS483489.1_974010_974157_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|307aa|up_1|LS483489.1_974153_975074_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483489.1_975073_975367_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483489.1_977154_978201_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483489.1_978452_979361_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483489.1_979370_980810_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483489.1_980796_981402_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483489.1_981452_981776_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483489.1_981966_982278_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|121aa|down_6|LS483489.1_982645_983008_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483489.1_983007_983487_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483489.1_983483_984533_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483489.1_984513_985275_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
