The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	647255	701117	1915356	integrase,holin,tail,terminase,plate	Mannheimia_phage(10.64%)	82	642051:642067	678842:678858
642051:642067	attL	AAGTGCGGTAAAAATTT	NA	NA	NA	NA
SQJ01428.1|647255_648281_-|integrase	prophage integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	9.6e-57
SQJ01429.1|648619_648907_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01430.1|648910_649393_-	Protein of uncharacterised function (DUF551)	NA	A0A0M3LS47	Mannheimia_phage	45.5	9.5e-31
SQJ01431.1|649441_649984_-	modification methylase Bsp6I-like	NA	A0A0M3LP83	Mannheimia_phage	53.6	1.2e-45
SQJ01432.1|650137_650605_-	modification methylase Bsp6I-like	NA	Q6V7R9	Burkholderia_virus	66.0	1.1e-55
SQJ01433.1|650612_650972_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01434.1|650968_651205_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01435.1|651201_651771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01436.1|651873_652308_-	ssDNA-binding protein	NA	S5M9Z7	Pseudoalteromonas_phage	40.0	2.2e-18
SQJ01437.1|652317_652971_-	ERF superfamily	NA	A0A077KCB6	Edwardsiella_phage	42.9	7.5e-31
SQJ01438.1|652981_653482_-	Siphovirus Gp157	NA	A0A2H4IZG3	uncultured_Caudovirales_phage	33.3	1.9e-13
SQJ01439.1|653491_653635_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01440.1|653637_653799_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01441.1|653767_653992_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01442.1|653991_654333_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01443.1|654346_655084_-	modification methylase DpnIIB-like	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
SQJ01444.1|655174_656206_-	phage antirepressor protein	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
SQJ01445.1|656195_656447_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01446.1|656578_656737_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01447.1|657063_657285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01448.1|657299_657470_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQJ01449.1|657671_659516_-	putative prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQJ01450.1|659519_660173_-	phage repressor	NA	A0A1I9KG86	Aeromonas_phage	39.0	1.2e-31
SQJ01451.1|660274_660457_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA	NA
SQJ01452.1|660517_660952_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01453.1|661000_661675_+	Probable phage repressor protein	NA	D0UIL6	Aggregatibacter_phage	68.4	1.1e-80
SQJ01454.1|661671_662394_+	Uncharacterised protein	NA	D0UIL5	Aggregatibacter_phage	68.8	5.9e-61
SQJ01455.1|662390_663017_+	Replication protein P	NA	A0A0M3LS65	Mannheimia_phage	37.5	3.4e-28
SQJ01456.1|663013_663604_+	DNA methylase	NA	A0A0M3LNW2	Mannheimia_phage	56.6	2.0e-51
SQJ01457.1|663608_664118_+	Protein of uncharacterised function (DUF1367)	NA	A0A0M3LR84	Mannheimia_phage	76.2	1.1e-69
SQJ01458.1|664118_664547_-	Uncharacterised protein family (UPF0150)	NA	NA	NA	NA	NA
SQJ01459.1|664829_664919_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01460.1|664918_665506_+	ning recombination protein	NA	A0A2I7RAC0	Vibrio_phage	48.5	3.7e-37
SQJ01461.1|665507_665873_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SQJ01462.1|665912_666431_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01463.1|666550_667441_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01464.1|667849_668362_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01465.1|668540_668900_+|holin	Putative bacteriophage holin protein	holin	NA	NA	NA	NA
SQJ01466.1|668865_669468_+	Putative phage lysozyme	NA	Q7Y5V0	Haemophilus_phage	55.4	3.9e-58
SQJ01467.1|669460_669784_+	putative bacteriophage protein	NA	Q7Y5U9	Haemophilus_phage	48.6	8.0e-18
SQJ01468.1|669978_670326_-	transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	1.5e-22
SQJ01469.1|670309_670561_-	bacteriophage protein/plasmid stabilization system protein	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
SQJ01470.1|670638_671157_+|terminase	Probable bacteriophage terminase, small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	3.6e-20
SQJ01471.1|671101_671389_+|terminase	phage terminase large subunit	terminase	A0A2H4J196	uncultured_Caudovirales_phage	51.9	1.3e-14
SQJ01472.1|671474_672137_+|terminase	phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	55.0	6.8e-64
SQJ01473.1|672105_672498_+|terminase	phage terminase large subunit	terminase	A0A0M4RQB1	Streptomyces_phage	69.6	1.1e-37
SQJ01474.1|672499_673816_+	phage-associated protein, HI1409 family	NA	A0A2K9V3H1	Faecalibacterium_phage	32.0	3.0e-47
SQJ01475.1|673754_675014_+	phage Mu protein gp30-like protein	NA	E5AGA5	Erwinia_phage	31.5	3.1e-25
SQJ01476.1|675139_676213_+	Uncharacterized protein conserved in bacteria	NA	E5AGA6	Erwinia_phage	39.3	4.2e-55
SQJ01477.1|676226_676646_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01478.1|676707_677655_+	Uncharacterized protein conserved in bacteria	NA	A0A0N9SG07	Pseudomonas_phage	36.6	2.8e-50
SQJ01479.1|677657_677846_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01480.1|677849_678200_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01481.1|678192_678651_+	Mu-like prophage protein gpG	NA	A0A2I7R754	Vibrio_phage	34.5	1.8e-15
SQJ01482.1|678650_679010_+	Uncharacterised protein	NA	NA	NA	NA	NA
678842:678858	attR	AAGTGCGGTAAAAATTT	NA	NA	NA	NA
SQJ01483.1|679011_679521_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01484.1|679507_680581_+	phage-like protein	NA	A0A0N9SJA3	Pseudomonas_phage	41.3	4.8e-59
SQJ01485.1|680626_681052_+	Uncharacterised protein	NA	A0A0A1IUI2	Pseudomonas_phage	36.9	2.6e-16
SQJ01486.1|681051_681534_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01487.1|681569_681722_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01488.1|681718_684049_+|tail	phage-like minor tail protein	tail	K7RVL7	Vibrio_phage	29.3	6.2e-35
SQJ01489.1|684139_684721_+	Uncharacterised protein	NA	I3PGV3	Xanthomonas_phage	27.7	5.7e-06
SQJ01490.1|684717_685032_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01491.1|685028_685985_+	Uncharacterised protein	NA	M4SNA5	Psychrobacter_phage	29.9	9.4e-22
SQJ01492.1|685987_686659_+|plate	phage baseplate assembly protein V	plate	A0A0M5M1K7	Salmonella_phage	34.6	2.5e-21
SQJ01493.1|686655_687021_+	Uncharacterised protein	NA	A0A1J0MEY0	Pectobacterium_phage	34.5	8.2e-11
SQJ01494.1|687013_688450_+	Uncharacterized homolog of phage Mu protein gp47	NA	A0A0N9SH53	Pseudomonas_phage	28.4	1.1e-45
SQJ01495.1|688458_689085_+	Protein of uncharacterised function (DUF2612)	NA	A0A0N9SSD8	Pseudomonas_phage	37.4	1.0e-21
SQJ01496.1|689081_691340_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	56.2	1.1e-172
SQJ01497.1|691342_691969_+	HP1	NA	Q94MX9	Haemophilus_virus	45.2	2.7e-30
SQJ01498.1|691961_692450_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	56.2	1.9e-47
SQJ01499.1|692625_692745_+	mu com-like protein	NA	NA	NA	NA	NA
SQJ01500.1|692806_693652_+	D12 class N6 adenine-specific DNA methyltransferase	NA	F6MIM2	Haemophilus_phage	71.4	3.1e-117
SQJ01501.1|693690_693954_-	Uncharacterised protein	NA	F6MIM3	Haemophilus_phage	79.1	7.2e-33
SQJ01502.1|694632_695358_+	putative methyltransferase	NA	NA	NA	NA	NA
SQJ01503.1|695410_695863_+	DNA-binding transcriptional repressor	NA	NA	NA	NA	NA
SQJ01504.1|695929_697144_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
SQJ01505.1|697203_697584_+	iron-sulfur cofactor synthesis protein NifU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
SQJ01506.1|697641_697965_+	FeS cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
SQJ01507.1|697977_698502_+	DnaJ-like molecular chaperone specific for IscU	NA	NA	NA	NA	NA
SQJ01508.1|698552_699239_+	Protein of uncharacterised function DUF2625	NA	NA	NA	NA	NA
SQJ01509.1|699257_701117_+	DnaK-like molecular chaperone	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.3	2.3e-109
>prophage 2
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	749795	756450	1915356		Bacillus_virus(16.67%)	9	NA	NA
SQJ01564.1|749795_750368_+	component of RuvABC resolvasome, endonuclease	NA	G3MA90	Bacillus_virus	27.8	1.9e-09
SQJ01565.1|750430_751045_+	component of RuvABC resolvasome, regulatory subunit	NA	NA	NA	NA	NA
SQJ01566.1|751052_752060_+	ATP-dependent DNA helicase, component of RuvABC resolvasome	NA	B3GAM6	uncultured_virus	29.9	6.9e-07
SQJ01567.1|752111_752399_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01568.1|752571_753465_-	site-specific tyrosine recombinase	NA	A0A0K2CP59	Brevibacillus_phage	30.1	3.2e-32
SQJ01569.1|753495_754662_-	3-phenylpropionic transporter	NA	NA	NA	NA	NA
SQJ01570.1|754661_755477_-	pyrroline-5-carboxylate reductase, NAD(P)-binding	NA	A0A1X9I6T5	Streptococcus_phage	28.8	1.4e-18
SQJ01571.1|755542_755842_+	DNA recombination related-protein RdgC	NA	W6AT81	Vibrio_phage	37.6	9.4e-13
SQJ01572.1|755871_756450_+	DNA recombination related-protein RdgC	NA	S4TWL4	Salmonella_phage	49.2	8.4e-42
>prophage 3
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	768114	772436	1915356		uncultured_virus(100.0%)	9	NA	NA
SQJ01586.1|768114_768321_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	49.3	9.6e-09
SQJ01587.1|768394_768601_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01588.1|768674_768881_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01589.1|768954_769161_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01590.1|769234_769441_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01591.1|769514_769721_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01592.1|769806_770013_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01593.1|770086_770293_+	mercuric ion scavenger protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
SQJ01594.1|770267_772436_+	copper transporter	NA	A0A218MNH6	uncultured_virus	51.7	3.6e-194
>prophage 4
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	931022	1009035	1915356	integrase,protease,tail,capsid,holin,tRNA,terminase,portal	Haemophilus_virus(71.43%)	75	924750:924767	966482:966499
924750:924767	attL	AATTGACCGCACTTTTTG	NA	NA	NA	NA
SQJ01824.1|931022_931910_+|protease	modulator for HflB protease specific for phage lambda cII repressor	protease	NA	NA	NA	NA
SQJ01827.1|931951_932242_-	putative protein-S-isoprenylcysteine methyltransferase	NA	NA	NA	NA	NA
SQJ01830.1|932547_933687_-	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA	NA
SQJ01833.1|933850_935701_-	putative sialic acid transporter, TRAP-type C4-dicarboxylate transport system, large permease component	NA	NA	NA	NA	NA
SQJ01834.1|935765_936755_-	transporter	NA	NA	NA	NA	NA
SQJ01835.1|937104_937791_+	N-acetylmannosamine-6-P epimerase	NA	NA	NA	NA	NA
SQJ01836.1|937835_938738_+	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
SQJ01837.1|938730_939597_+	putative HTH-type transcriptional regulator	NA	NA	NA	NA	NA
SQJ01838.1|939607_940489_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQJ01839.1|940636_941449_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQJ01840.1|941585_942731_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
SQJ01841.1|942926_944003_-	outer membrane protein P2	NA	NA	NA	NA	NA
SQJ01842.1|944265_944730_-	ribonuclease HI, degrades RNA of DNA-RNA hybrids	NA	J9Q745	Salmonella_phage	52.9	5.0e-45
SQJ01843.1|944790_945558_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	35.3	1.1e-36
SQJ01844.1|946239_947754_+	GTP-binding protein	NA	NA	NA	NA	NA
SQJ01845.1|947814_949023_-	arabinose transporter	NA	NA	NA	NA	NA
SQJ01846.1|949022_950198_-	putative assembly protein	NA	NA	NA	NA	NA
SQJ01847.1|950201_950789_-	2'-deoxycytidine 5'-triphosphate deaminase	NA	I4AZP2	Saccharomonospora_phage	40.5	2.8e-24
SQJ01848.1|950797_951439_-	uridine/cytidine kinase	NA	A0A1V0SAA3	Catovirus	38.1	1.1e-34
SQJ01849.1|951661_952978_-	permease	NA	A0A0R6PHV4	Moraxella_phage	80.7	3.1e-185
SQJ01850.1|953211_953742_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	36.9	3.7e-20
SQJ01851.1|954197_955211_-|integrase	integrase	integrase	Q94N03	Haemophilus_virus	98.2	8.5e-191
SQJ01852.1|955210_955804_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01853.1|955803_956010_-	ribonuclease P	NA	NA	NA	NA	NA
SQJ01854.1|956010_956244_-	Uncharacterised protein	NA	A0A0A7NPW2	Enterobacteria_phage	56.6	1.9e-16
SQJ01855.1|956254_956548_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01856.1|956548_957124_-	probable cI repressor	NA	Q94N02	Haemophilus_virus	97.4	8.2e-106
SQJ01857.1|957241_957454_+	putative cox protein	NA	P79674	Haemophilus_phage	95.7	1.9e-28
SQJ01858.1|957515_957908_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01859.1|957965_958214_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01860.1|958303_958672_+	Uncharacterised protein	NA	P79676	Haemophilus_phage	100.0	3.7e-67
SQJ01863.1|958671_958857_+	Uncharacterised protein	NA	Q775F8	Haemophilus_virus	98.4	5.2e-30
SQJ01866.1|958868_959150_+	Uncharacterised protein	NA	Q775F7	Haemophilus_virus	100.0	6.1e-46
SQJ01870.1|959227_961558_+	probable rep protein	NA	Q94N00	Haemophilus_virus	97.0	0.0e+00
SQJ01873.1|961640_961877_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01876.1|961879_962386_+	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	47.3	1.8e-27
SQJ01879.1|962354_962915_+	putative dam methylase	NA	Q94MZ8	Haemophilus_virus	98.3	4.7e-98
SQJ01882.1|963216_963618_+	Antitoxin HicB	NA	Q775F5	Haemophilus_virus	100.0	2.3e-70
SQJ01885.1|963985_965023_-|capsid,portal	probable capsid portal protein	capsid,portal	Q94MZ7	Haemophilus_virus	99.7	2.3e-199
SQJ01887.1|965012_966836_-|terminase	probable terminase, ATPase subunit	terminase	Q94MZ6	Haemophilus_virus	96.7	0.0e+00
966482:966499	attR	AATTGACCGCACTTTTTG	NA	NA	NA	NA
SQJ01913.1|967053_967947_+|capsid	probable capsid scaffold protein	capsid	Q94MZ5	Haemophilus_virus	93.3	1.5e-143
SQJ01916.1|967950_968961_+|capsid	phage major capsid protein	capsid	Q94MZ4	Haemophilus_virus	95.5	6.1e-181
SQJ01919.1|968974_969820_+|terminase	probable terminase, endonuclease subunit	terminase	Q94MZ3	Haemophilus_virus	97.5	8.5e-152
SQJ01963.1|969812_970265_+	phage protein	NA	Q94MZ2	Haemophilus_virus	96.7	9.1e-76
SQJ01964.1|970252_970735_+	phage protein	NA	Q94MZ1	Haemophilus_virus	64.8	1.3e-56
SQJ01965.1|970743_971457_+	phage protein	NA	Q1I0Z5	Pasteurella_virus	33.2	3.2e-19
SQJ01966.1|971543_971702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01967.1|971736_972867_+|tail	tail sheath phage protein	tail	Q94MY9	Haemophilus_virus	97.1	3.0e-213
SQJ01968.1|972870_973323_+	phage protein	NA	Q94MY8	Haemophilus_virus	100.0	6.9e-76
SQJ01969.1|973409_973646_+|holin	putative holin	holin	Q94MY7	Haemophilus_virus	100.0	4.8e-36
SQJ01970.1|973638_974199_+	lysozyme precursor phage protein	NA	Q94MY6	Haemophilus_virus	96.6	1.3e-95
SQJ01971.1|974198_974531_+	Uncharacterised protein	NA	Q94MY5	Haemophilus_virus	99.1	1.8e-52
SQJ01975.1|974723_975032_+	phage protein	NA	Q775G2	Haemophilus_virus	100.0	1.2e-47
SQJ01976.1|975220_977290_+|tail	Phage-related minor tail protein	tail	Q94MY4	Haemophilus_virus	73.8	1.2e-279
SQJ01977.1|977293_977629_+	phage protein	NA	Q94MY3	Haemophilus_virus	99.1	2.3e-52
SQJ01978.1|977621_978791_+	phage protein	NA	Q94MY2	Haemophilus_virus	97.6	4.4e-215
SQJ01979.1|978800_979325_+|tail	Phage tail protein (Tail_P2_I)	tail	Q94MY1	Haemophilus_virus	100.0	4.8e-97
SQJ02018.1|979354_981808_+|tail	probable tail fiber protein	tail	Q94MY0	Haemophilus_virus	84.2	0.0e+00
SQJ02019.1|981814_982138_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	41.4	7.5e-08
SQJ02020.1|982149_982752_+	Uncharacterised protein	NA	Q94MX9	Haemophilus_virus	93.0	1.2e-96
SQJ02021.1|982793_983561_+	Uncharacterised protein	NA	Q94MX8	Haemophilus_virus	96.9	8.9e-132
SQJ02022.1|983547_984174_+	phage protein	NA	Q94MX7	Haemophilus_virus	100.0	2.0e-73
SQJ02023.1|984160_985762_+	phage protein	NA	Q94MX6	Haemophilus_virus	90.1	1.6e-276
SQJ02024.1|986758_987271_-	phosphatidylglycerophosphate synthetase	NA	NA	NA	NA	NA
SQJ02025.1|987416_988019_-	peroxiredoxin	NA	NA	NA	NA	NA
SQJ02026.1|988155_989343_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQJ02027.1|989727_991089_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
SQJ02028.1|991201_991708_+	Uncharacterized integral membrane protein	NA	NA	NA	NA	NA
SQJ02029.1|991757_992759_-	zinc transporter subunit: periplasmic-binding component of ABC superfamily	NA	NA	NA	NA	NA
SQJ02030.1|992936_993707_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA	NA
SQJ02031.1|993706_994816_-	membrane-bound lytic murein transglycosylase A	NA	NA	NA	NA	NA
SQJ02032.1|995210_997370_+	putative methyltransferase	NA	NA	NA	NA	NA
SQJ02033.1|1004190_1006422_-	TonB-dependent heme receptor A	NA	NA	NA	NA	NA
SQJ02034.1|1006782_1007412_-	glutathionine S-transferase	NA	NA	NA	NA	NA
SQJ02035.1|1007745_1009035_-|tRNA	seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.1	3.3e-94
>prophage 5
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	1300600	1358070	1915356	integrase,lysis,protease,tail,capsid,holin,tRNA,terminase,head,portal,plate	Mannheimia_phage(48.65%)	73	1291199:1291215	1361568:1361584
1291199:1291215	attL	AATCTACCGCACTTTTT	NA	NA	NA	NA
SQJ02538.1|1300600_1301992_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
SQJ02541.1|1302185_1303076_+	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit	NA	NA	NA	NA	NA
SQJ02543.1|1303077_1304382_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQJ02545.1|1304669_1305350_-	SanA	NA	NA	NA	NA	NA
SQJ02547.1|1305507_1306356_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SQJ02549.1|1306333_1306585_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SQJ02634.1|1306718_1309283_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.0e-103
SQJ02647.1|1309882_1311646_-	YcaO-like family	NA	NA	NA	NA	NA
SQJ02713.1|1311782_1312259_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ02715.1|1312494_1313301_+	type 11 methyltransferase	NA	NA	NA	NA	NA
SQJ02716.1|1313352_1314054_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
SQJ02788.1|1314097_1314958_-	tellurite resistance protein	NA	NA	NA	NA	NA
SQJ02969.1|1315070_1317119_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0S905	Catovirus	24.7	1.2e-26
SQJ03121.1|1317269_1318382_+	antiporter inner membrane protein	NA	NA	NA	NA	NA
SQJ03122.1|1318428_1319091_-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive	NA	NA	NA	NA	NA
SQJ03140.1|1319204_1319879_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
SQJ03154.1|1320586_1321597_-|portal	portal vertex protein	portal	Q19UT6	Mannheimia_phage	61.9	2.1e-120
SQJ03171.1|1321606_1323319_-	Terminase, ATPase subunit	NA	A0A0M3LRV4	Mannheimia_phage	65.4	1.3e-215
SQJ03175.1|1323450_1323879_+	Uncharacterised protein family (UPF0150)	NA	NA	NA	NA	NA
SQJ03182.1|1324144_1324777_+	prophage antirepressor	NA	D0UIM5	Aggregatibacter_phage	38.6	4.1e-34
SQJ03374.1|1324954_1325761_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.6	2.5e-60
SQJ03377.1|1325782_1326832_+|capsid	major capsid protein	capsid	Q19UT3	Mannheimia_phage	51.9	5.7e-89
SQJ03378.1|1326843_1327494_+|terminase	terminase, endonuclease subunit	terminase	Q19US0	Mannheimia_phage	46.0	5.3e-45
SQJ03379.1|1327786_1328293_+|head	putative phage head completion	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.3e-33
SQJ03380.1|1328292_1328502_+|tail	Probable bacteriophage tail protein X	tail	E5G6M9	Salmonella_phage	40.6	4.5e-06
SQJ03381.1|1328503_1328725_+|holin	holin	holin	NA	NA	NA	NA
SQJ03382.1|1328717_1329236_+	phage-like lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
SQJ03383.1|1329220_1329571_+|lysis	phage lysis regulatory protein, LysB family	lysis	NA	NA	NA	NA
SQJ03384.1|1329745_1329961_+	DnaK suppressor protein	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
SQJ03385.1|1329957_1330428_+|tail	Probable bacteriophage tail completion protein	tail	E5G6N3	Salmonella_phage	44.6	2.8e-27
SQJ03409.1|1330427_1330886_+|tail	Probable bacteriophage tail completion protein	tail	A0A2H4J927	uncultured_Caudovirales_phage	51.1	3.5e-27
SQJ03410.1|1330863_1331136_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03421.1|1331205_1333941_+|tail	phage-related tail protein	tail	A0A0A7NRZ9	Enterobacteria_phage	36.3	2.2e-87
SQJ03426.1|1334041_1334599_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03428.1|1334607_1335036_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03430.1|1335145_1335739_+|plate	phage P2-like baseplate assembly protein	plate	A0A0M3LPY9	Mannheimia_phage	66.0	6.0e-43
SQJ03431.1|1335740_1336079_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	4.5e-19
SQJ03433.1|1336075_1336990_+|plate	phage-like baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.2	3.9e-94
SQJ03435.1|1336976_1337519_+|tail	Probable bacteriophage tail protein gpI	tail	Q19UQ4	Mannheimia_phage	52.5	3.9e-49
SQJ03437.1|1337527_1340050_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	69.1	7.2e-255
SQJ03439.1|1340061_1340670_+	Uncharacterised protein	NA	Q94MX9	Haemophilus_virus	80.5	1.1e-79
SQJ03440.1|1340662_1341061_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	51.3	6.4e-25
SQJ03442.1|1341300_1342485_+|tail	phage tail sheath-like protein	tail	A0A1S6KZY7	Salmonella_phage	48.2	1.7e-102
SQJ03444.1|1342488_1342995_+|tail	phage-related tail protein	tail	Q19UP8	Mannheimia_phage	59.5	3.2e-53
SQJ03480.1|1343063_1343363_+|tail	Probable bacteriophage tail protein E	tail	A0A0F7LBN9	Escherichia_phage	42.9	1.8e-11
SQJ03481.1|1343362_1343509_+|tail	Probable bacteriophage tail protein E+E'	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
SQJ03482.1|1343636_1344074_+|tail	phage-related tail protein	tail	A0A0M3LQ18	Mannheimia_phage	56.6	5.4e-41
SQJ03483.1|1344073_1344958_+	regulator of late gene expression	NA	R9QBT3	Mannheimia_phage	60.5	1.5e-90
SQJ03484.1|1344958_1345294_+	d protein bacteriophage 186 and p2-like protein	NA	Q19UP4	Mannheimia_phage	57.1	3.2e-25
SQJ03486.1|1345311_1345701_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03488.1|1345760_1347521_-	Uncharacterized protein conserved in bacteria (DUF2326)	NA	NA	NA	NA	NA
SQJ03495.1|1347523_1347769_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03746.1|1347765_1348527_-	Predicted restriction endonuclease	NA	NA	NA	NA	NA
SQJ03748.1|1348554_1348794_-	Excalibur calcium-binding domain	NA	A0A0R6PHV6	Moraxella_phage	53.5	8.9e-06
SQJ04178.1|1348790_1349297_-	BRCT domain type II	NA	Q19UP0	Mannheimia_phage	43.7	7.9e-36
SQJ04198.1|1349305_1349890_-	phage repressor	NA	Q76H56	Enterobacteria_phage	34.4	6.3e-21
SQJ04204.1|1349855_1350002_-	phage-related repressor protein	NA	NA	NA	NA	NA
SQJ04241.1|1350121_1350346_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	Q76H55	Enterobacteria_phage	55.9	7.0e-13
SQJ04398.1|1350400_1350643_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04399.1|1350677_1350971_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04423.1|1351051_1351207_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04425.1|1351423_1351927_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04427.1|1351811_1352072_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04429.1|1352068_1352203_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04431.1|1352492_1352705_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04433.1|1352782_1353154_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04435.1|1353157_1353400_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04437.1|1353396_1353510_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04438.1|1353525_1353834_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ04439.1|1353843_1356030_+	Probable bacteriophage replication protein A	NA	Q94N00	Haemophilus_virus	42.5	1.7e-164
SQJ04440.1|1356084_1356591_+	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	42.9	3.7e-25
SQJ04441.1|1356590_1356758_+	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
SQJ04661.1|1356738_1358070_-|integrase	phage integrase family protein	integrase	A0A1V0E8G8	Vibrio_phage	29.1	4.2e-44
1361568:1361584	attR	AAAAAGTGCGGTAGATT	NA	NA	NA	NA
>prophage 6
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	1464332	1495077	1915356	integrase,terminase	Mannheimia_phage(22.58%)	50	1487087:1487103	1501183:1501199
SQJ05044.1|1464332_1464509_-	Uncharacterized protein conserved in bacteria	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
SQJ05048.1|1464649_1465831_-	phage Mu protein gp30-like protein	NA	Q7Y5U5	Haemophilus_phage	76.7	6.4e-89
SQJ05051.1|1465859_1467194_-	phage-associated protein, HI1409 family	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
SQJ05054.1|1467195_1468539_-|terminase	phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.4	2.8e-125
SQJ05059.1|1468525_1469038_-|terminase	Probable bacteriophage terminase, small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
SQJ05062.1|1469082_1469361_+	transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
SQJ05067.1|1469555_1469891_-	putative bacteriophage protein	NA	Q7Y5U9	Haemophilus_phage	67.7	1.5e-27
SQJ05069.1|1469863_1470406_-	DLP12 prophage lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
SQJ05074.1|1470386_1470638_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05078.1|1470808_1470970_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05082.1|1471097_1471610_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05086.1|1472019_1472841_-	NYN domain	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
SQJ05089.1|1473042_1473528_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05093.1|1473600_1473966_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SQJ05098.1|1473967_1474555_-	ning recombination protein	NA	A0A2I7RAC0	Vibrio_phage	48.0	8.3e-37
SQJ05101.1|1474647_1475064_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	2.1e-63
SQJ05106.1|1475100_1475325_-	Uncharacterised protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
SQJ05110.1|1475321_1475963_-	phage replication protein	NA	D0UIL4	Aggregatibacter_phage	45.0	4.2e-34
SQJ05115.1|1475959_1476283_-	putative phage DNA replication protein O	NA	D0UIL5	Aggregatibacter_phage	61.9	2.8e-26
SQJ05119.1|1476272_1476737_-	putative phage DNA replication protein O	NA	A0A0P0IKQ2	Acinetobacter_phage	45.6	5.4e-15
SQJ05122.1|1476738_1476981_-	Uncharacterised protein	NA	A0A0M3LR73	Mannheimia_phage	44.2	3.5e-10
SQJ05126.1|1477137_1477569_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05130.1|1477582_1477810_-	DNA-binding transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	50.7	7.9e-12
SQJ05134.1|1477946_1478852_+	bacteriophage transcriptional regulator	NA	B6SCU0	Bacteriophage	40.8	1.4e-38
SQJ05138.1|1478867_1479962_+	Protein of uncharacterised function DUF262	NA	A0A0R6PKN1	Moraxella_phage	37.1	4.0e-61
SQJ05142.1|1479961_1480621_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05146.1|1480577_1481609_-	modification methylase haeiii	NA	A0A0R6PG08	Moraxella_phage	66.4	2.8e-128
SQJ05150.1|1481996_1482167_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQJ05153.1|1482181_1482403_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05156.1|1482737_1482908_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05159.1|1483072_1483903_+	KilA-N domain	NA	Q4ZC41	Staphylococcus_virus	52.2	3.4e-76
SQJ05163.1|1484222_1484837_+	putative prophage antirepressor	NA	Q7Y5X0	Haemophilus_phage	60.6	1.9e-36
SQJ05165.1|1484927_1485665_+	modification methylase DpnIIB-like	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
SQJ05167.1|1485678_1486023_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05170.1|1486019_1486313_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05173.1|1486325_1487246_+	recombinational DNA repair protein, rece pathway	NA	A0A0M3LNU3	Mannheimia_phage	71.5	6.3e-116
1487087:1487103	attL	GGTTGTTGATGAAGCCA	NA	NA	NA	NA
SQJ05176.1|1487220_1487871_+	Uncharacterised protein	NA	A0A0M3LP90	Mannheimia_phage	70.6	1.0e-83
SQJ05179.1|1487870_1488305_+	ssDNA-binding protein	NA	R9TP78	Rhizobium_phage	36.2	1.3e-18
SQJ05182.1|1488366_1489146_+	Uncharacterised protein	NA	A0A2H4FRY7	Salmonella_phage	59.6	1.4e-36
SQJ05185.1|1489270_1490167_+	recombination associated protein	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
SQJ05189.1|1490163_1490409_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05192.1|1490405_1490765_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05195.1|1490761_1491550_+	C5 methylase	NA	U4KJA1	Streptococcus_phage	56.7	4.0e-79
SQJ05198.1|1491560_1492208_+	Uncharacterised protein	NA	A0A0M3LNU4	Mannheimia_phage	40.0	1.0e-08
SQJ05201.1|1492211_1492628_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05205.1|1492707_1493196_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05209.1|1493185_1493509_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05212.1|1493501_1493774_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05215.1|1493815_1494019_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ05218.1|1494090_1495077_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	55.6	5.9e-96
1501183:1501199	attR	TGGCTTCATCAACAACC	NA	NA	NA	NA
>prophage 7
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	1915356	1728686	1737195	1915356		Bacillus_virus(33.33%)	8	NA	NA
SQJ07801.1|1728686_1729370_+	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
SQJ07803.1|1729362_1729788_+	6-pyruvoyl-tetrahydropterin synthase	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
SQJ07805.1|1729794_1730424_+	organic radical activating protein	NA	A0A218M2Y8	Acidovorax_phage	35.2	2.9e-11
SQJ07807.1|1731030_1733214_+	DNA-dependent ATPase I and helicase II	NA	A7KV33	Bacillus_phage	37.6	6.7e-116
SQJ07809.1|1733303_1734305_+	dipeptide transporter	NA	NA	NA	NA	NA
SQJ07811.1|1734319_1735207_+	dipeptide transporter	NA	NA	NA	NA	NA
SQJ07813.1|1735216_1736209_+	dipeptide transporter	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
SQJ07815.1|1736211_1737195_+	dipeptide transporter	NA	G3M9Y6	Bacillus_virus	27.3	4.2e-17
