The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	141439	187250	5859982	transposase,tRNA	Prochlorococcus_phage(16.67%)	51	NA	NA
SQI79402.1|141439_141703_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI79405.1|142016_142379_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI79408.1|142326_142431_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI79410.1|142420_142855_-	phosphopantetheine adenylyltransferase	NA	NA	NA	NA	NA
SQI79413.1|143130_143340_-	two-domain glycosyltransferase	NA	NA	NA	NA	NA
SQI79416.1|143423_144209_-	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
SQI79420.1|144580_144964_-	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
SQI79423.1|145414_145675_-	glycosyltransferase	NA	NA	NA	NA	NA
SQI79429.1|145740_146220_-	glycosyltransferase	NA	NA	NA	NA	NA
SQI79431.1|146250_147345_-	glycosyltransferase	NA	NA	NA	NA	NA
SQI79433.1|147347_148475_-	UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG	NA	NA	NA	NA	NA
SQI79436.1|148471_149548_-	lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA	NA
SQI79438.1|149659_150622_+	deacetylase	NA	NA	NA	NA	NA
SQI79444.1|150643_151726_+	heptosyl transferase	NA	NA	NA	NA	NA
SQI79446.1|151602_152391_-	O-antigen polymerase	NA	NA	NA	NA	NA
SQI79449.1|152897_153806_-	lipopolysaccharide core biosynthesis protein RfaZ	NA	NA	NA	NA	NA
SQI79452.1|153805_154777_-	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
SQI79455.1|154780_155407_-	ADP-heptose-lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA	NA
SQI79481.1|155414_155840_-	ADP-heptose-lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA	NA
SQI79482.1|155956_156901_-	ADP-L-glycero-D-manno-heptose-6-epimerase	NA	R9S880	Prochlorococcus_phage	36.1	8.6e-36
SQI79490.1|157115_158309_+	2-amino-3-ketobutyrate coenzyme A ligase	NA	V5LQ39	Emiliania_huxleyi_virus	29.6	3.4e-37
SQI79492.1|158318_159344_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	82.7	1.0e-18
SQI79498.1|159506_160304_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
SQI79503.1|160300_161188_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQI79506.1|161239_162511_-	peptidase M37	NA	G9BW84	Planktothrix_phage	33.9	2.1e-08
SQI79512.1|162520_164065_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQI79516.1|164310_164742_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQI79541.1|164853_165105_+	glutaredoxin 3 (Grx3)	NA	V9QKN6	Rhizobium_phage	53.4	7.6e-16
SQI79556.1|165165_165633_+	protein export cytoplasm chaperone protein SecB	NA	NA	NA	NA	NA
SQI79557.1|165632_166649_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQI79558.1|166729_167323_+	serine acetyltransferase	NA	NA	NA	NA	NA
SQI79691.1|167276_167552_+	serine acetyltransferase	NA	NA	NA	NA	NA
SQI79697.1|167656_168130_-|tRNA	tRNA (cytosine34-2'-O-)-methyltransferase	tRNA	NA	NA	NA	NA
SQI79700.1|168256_169480_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQI79703.1|169479_170253_-	DNA-binding transcriptional repressor LldR	NA	NA	NA	NA	NA
SQI79713.1|170249_171905_-	L-lactate permease	NA	NA	NA	NA	NA
SQI79715.1|172584_173052_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI79717.1|173088_173607_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI79719.1|173928_174291_-	Protein of uncharacterised function (DUF2810)	NA	NA	NA	NA	NA
SQI79721.1|174566_174791_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI79722.1|174779_175313_-	mannitol repressor protein	NA	NA	NA	NA	NA
SQI79723.1|175372_176521_-	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
SQI79724.1|176644_178555_-	PTS system protein	NA	NA	NA	NA	NA
SQI79725.1|179089_179305_+	GTPase	NA	NA	NA	NA	NA
SQI79726.1|179465_180602_+	tripartite multidrug resistance system membrane fusion protein	NA	NA	NA	NA	NA
SQI79727.1|180693_181302_+	glutathione S-transferase	NA	NA	NA	NA	NA
SQI79728.1|181397_182786_+|tRNA	L-seryl-tRNA(Sec) selenium transferase	tRNA	NA	NA	NA	NA
SQI79731.1|182782_184630_+	Selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	25.1	4.0e-13
SQI79732.1|184698_185022_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI79733.1|185421_185910_+	electron transport protein YsaA	NA	NA	NA	NA	NA
SQI79738.1|186227_187250_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
>prophage 2
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	1564156	1652233	5859982	protease,transposase,tRNA	Bacillus_virus(10.53%)	98	NA	NA
SQI87027.1|1564156_1564741_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	3.5e-64
SQI87029.1|1564873_1566145_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.6	5.8e-128
SQI87031.1|1566333_1567419_+|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	37.9	1.2e-60
SQI87033.1|1567471_1568557_+|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	65.0	2.4e-135
SQI87035.1|1568546_1568708_+|protease	DNA-binding ATP-dependent protease La	protease	NA	NA	NA	NA
SQI87037.1|1569386_1571261_+	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI87039.1|1571409_1571577_+	competence protein ComEA	NA	NA	NA	NA	NA
SQI87041.1|1571590_1571779_+	competence protein ComEA	NA	NA	NA	NA	NA
SQI87043.1|1571889_1572294_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
SQI87045.1|1572515_1573211_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	1.4e-88
SQI87047.1|1573277_1574978_-	oligopeptide ABC transporter	NA	NA	NA	NA	NA
SQI87049.1|1575104_1575923_+	Cof protein	NA	NA	NA	NA	NA
SQI87051.1|1575969_1577022_-	cysteine synthase B	NA	NA	NA	NA	NA
SQI87053.1|1577137_1577596_+	HTH-type transcriptional regulator ybaO	NA	NA	NA	NA	NA
SQI87055.1|1577638_1579411_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.7e-48
SQI87057.1|1579497_1581183_+	putative multidrug transporter membrane\ATP-binding components	NA	W8CYL7	Bacillus_phage	27.4	1.3e-39
SQI87059.1|1581182_1581413_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87061.1|1581426_1581765_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI87063.1|1581798_1583085_+	ammonium transporter	NA	NA	NA	NA	NA
SQI87065.1|1583141_1584005_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI87067.1|1584534_1585044_+	glycoprotein-polysaccharide metabolism	NA	NA	NA	NA	NA
SQI87069.1|1585083_1585395_-	putative methyltransferase	NA	NA	NA	NA	NA
SQI87071.1|1585534_1585813_-	dTDP-glucose pyrophosphorylase	NA	NA	NA	NA	NA
SQI87072.1|1586516_1586774_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87073.1|1586770_1586986_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87074.1|1587119_1587707_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI87075.1|1587711_1588548_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI87076.1|1588635_1589250_+	membrane protein	NA	NA	NA	NA	NA
SQI87077.1|1589342_1589696_+	RNA signal recognition particle 4.5S RNA	NA	NA	NA	NA	NA
SQI87078.1|1589742_1590609_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
SQI87079.1|1590776_1591049_+	transcriptional repressor RcnR	NA	NA	NA	NA	NA
SQI87080.1|1591051_1592638_-	cyclic diguanylate phosphodiesterase (EAL) domain-containing protein	NA	NA	NA	NA	NA
SQI87081.1|1592887_1593997_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	34.1	1.0e-24
SQI87082.1|1594351_1594495_+	maltose/maltodextrinABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
SQI87083.1|1594535_1595585_+	maltose/maltodextrinABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
SQI87084.1|1595640_1596930_+	maltose/maltodextrin ABC transporter	NA	NA	NA	NA	NA
SQI87085.1|1596959_1597643_+	maltose/maltodextrin ABC transporter	NA	NA	NA	NA	NA
SQI87086.1|1597816_1599016_+	galactosidase	NA	NA	NA	NA	NA
SQI87087.1|1599051_1599246_+	beta-galactosidase	NA	NA	NA	NA	NA
SQI87088.1|1599256_1601110_+	beta-galactosidase	NA	NA	NA	NA	NA
SQI87089.1|1601175_1601490_+	PTS system protein	NA	NA	NA	NA	NA
SQI87090.1|1601612_1602884_-	maltoporin	NA	NA	NA	NA	NA
SQI87091.1|1603153_1603633_+	lac operon transcriptional repressor	NA	C6ZCU4	Enterobacteria_phage	48.6	2.0e-28
SQI87092.1|1603580_1604042_+	lac operon transcriptional repressor	NA	C6ZCU4	Enterobacteria_phage	45.5	8.5e-29
SQI87093.1|1604604_1604745_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
SQI87094.1|1604844_1605441_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQI87095.1|1605543_1606998_+	transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	23.2	8.1e-17
SQI87096.1|1606972_1607407_-	inner membrane protein	NA	NA	NA	NA	NA
SQI87097.1|1607580_1608144_-	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI87098.1|1608309_1608528_-	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI87099.1|1609411_1612558_-	RND efflux system	NA	S5VTK5	Leptospira_phage	22.9	7.0e-50
SQI87100.1|1612580_1613774_-	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SQI87101.1|1614284_1614476_+	transcription repressor of multidrug efflux pump acrAB operon	NA	NA	NA	NA	NA
SQI87102.1|1614989_1615151_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQI87103.1|1615249_1617733_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQI87104.1|1617752_1618052_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQI87105.1|1618199_1618745_-|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	50.0	1.0e-36
SQI87106.1|1618770_1619013_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI87107.1|1619078_1619252_-	inner membrane protein	NA	NA	NA	NA	NA
SQI87108.1|1619266_1619794_-	primosomal replication protein N''	NA	NA	NA	NA	NA
SQI87109.1|1619863_1620241_+	membrane protein	NA	NA	NA	NA	NA
SQI87110.1|1620391_1620943_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	2.3e-28
SQI87111.1|1622997_1623330_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI87112.1|1623329_1623935_+	Recombination protein RecR	NA	NA	NA	NA	NA
SQI87113.1|1624047_1625922_+	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.0	1.2e-110
SQI87114.1|1626230_1626875_+	adenylate kinase	NA	NA	NA	NA	NA
SQI87115.1|1627002_1627965_+	ferrochelatase	NA	NA	NA	NA	NA
SQI87116.1|1628028_1628718_+	inosine-guanosine kinase	NA	NA	NA	NA	NA
SQI87117.1|1628671_1629142_+	inosine-guanosine kinase	NA	NA	NA	NA	NA
SQI87118.1|1629080_1629335_+	inosine-guanosine kinase	NA	NA	NA	NA	NA
SQI87119.1|1629378_1630668_-	Potassium/proton antiporter RosB	NA	NA	NA	NA	NA
SQI87120.1|1630627_1631056_-	Potassium/proton antiporter RosB	NA	NA	NA	NA	NA
SQI87121.1|1631424_1632027_-	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI87122.1|1632019_1632646_-	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI87123.1|1632809_1632929_+	UDP-sugar hydrolase	NA	NA	NA	NA	NA
SQI87124.1|1633017_1633875_+	UDP-sugar hydrolase	NA	NA	NA	NA	NA
SQI87125.1|1633843_1634464_+	UDP-sugar hydrolase	NA	NA	NA	NA	NA
SQI87126.1|1634589_1635069_-	YbaK family protein	NA	NA	NA	NA	NA
SQI87127.1|1636332_1636629_-	Lead, cadmium, zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	50.5	4.6e-12
SQI87128.1|1636600_1637806_-	Lead, cadmium, zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	40.6	2.1e-63
SQI87129.1|1637753_1638836_-	Lead, cadmium, zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
SQI87130.1|1638942_1639353_+	HTH-type transcriptional regulator cueR	NA	NA	NA	NA	NA
SQI87131.1|1639349_1639652_-|protease	activity regulator of membrane protease YbbK	protease	NA	NA	NA	NA
SQI87132.1|1639624_1639813_-|protease	activity regulator of membrane protease YbbK	protease	NA	NA	NA	NA
SQI87133.1|1639809_1640727_-|protease	stomatin/prohibitin-family membrane protease subunit YbbK	protease	NA	NA	NA	NA
SQI87134.1|1640863_1641544_+	YbbL ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	4.2e-24
SQI87135.1|1641530_1642313_+	YbbM seven transmembrane helix protein	NA	NA	NA	NA	NA
SQI87136.1|1642410_1643265_-	thioredoxin domain-containing protein EC-YbbN	NA	NA	NA	NA	NA
SQI87137.1|1643326_1644097_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SQI87138.1|1644125_1644719_-|protease	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1	protease	NA	NA	NA	NA
SQI87139.1|1644719_1645406_+	metabolite ABC transporter	NA	G9BWD6	Planktothrix_phage	36.5	7.6e-34
SQI87140.1|1645402_1646368_+	metabolite ABC transporter	NA	NA	NA	NA	NA
SQI87141.1|1646327_1647821_+	metabolite ABC transporter	NA	NA	NA	NA	NA
SQI87142.1|1647919_1648075_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI87143.1|1648118_1648943_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI87144.1|1649504_1649678_-	protein ydhR	NA	NA	NA	NA	NA
SQI87145.1|1649887_1651033_+	outer membrane protein	NA	NA	NA	NA	NA
SQI87146.1|1651150_1652233_-|tRNA	Selenophosphate-dependent tRNA 2-selenouridine synthase	tRNA	NA	NA	NA	NA
>prophage 3
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	2174432	2189862	5859982		Salmonella_phage(37.5%)	27	NA	NA
SQI88781.1|2174432_2175446_-	transporter	NA	A0A0U2JGI6	Escherichia_phage	50.4	2.5e-89
SQI88784.1|2175445_2175661_-	putative excisionase	NA	NA	NA	NA	NA
SQI88786.1|2175748_2176093_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88788.1|2176089_2176314_-	Uncharacterised protein	NA	A0A286S2B3	Klebsiella_phage	59.5	4.3e-18
SQI88790.1|2177121_2177346_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88791.1|2177731_2178139_-	transcriptional repressor DicA	NA	B1B6L9	Salmonella_phage	54.9	1.2e-13
SQI88803.1|2178215_2178443_+	DNA-binding transcriptional regulator DicC	NA	K7PHK4	Enterobacteria_phage	44.3	1.4e-08
SQI88805.1|2178426_2178852_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQI88807.1|2178865_2179120_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88810.1|2179116_2180193_+	Replication protein O	NA	U5P0A0	Shigella_phage	48.9	2.3e-21
SQI88811.1|2180205_2180499_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88814.1|2180495_2180708_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88817.1|2180700_2181486_+	PRTRC system ParB family protein	NA	A4JX52	Burkholderia_virus	51.3	6.9e-63
SQI88819.1|2181482_2182559_+	DGQHR domain	NA	T1SBJ4	Salmonella_phage	73.0	1.4e-146
SQI88820.1|2182551_2182941_+	Uncharacterised protein	NA	A0A220NQV2	Salmonella_phage	65.9	9.1e-08
SQI88823.1|2182933_2183125_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88826.1|2183563_2183857_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88827.1|2184278_2184512_+	DinI family protein	NA	H6WRY5	Salmonella_phage	70.1	5.8e-26
SQI88830.1|2184638_2184821_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88833.1|2184987_2185293_+	Protein of uncharacterised function (DUF968)	NA	Q6V7S4	Burkholderia_virus	55.8	1.2e-23
SQI88835.1|2185289_2185949_+	DNA adenine methylase	NA	Q8HA94	Salmonella_phage	80.8	2.2e-102
SQI88838.1|2185945_2186524_+	Protein of uncharacterised function (DUF1133)	NA	A0A0U2S606	Escherichia_phage	53.3	1.8e-44
SQI88840.1|2186666_2188058_+	Predicted ATPase (AAA+ superfamily)	NA	NA	NA	NA	NA
SQI88843.1|2188149_2188536_+	putative prophage membrane protein	NA	A0A192Y8P2	Salmonella_phage	90.6	1.0e-56
SQI88846.1|2188885_2189434_+	lytic enzyme	NA	G8C7W0	Escherichia_phage	92.3	3.1e-94
SQI88848.1|2189441_2189717_+	Uncharacterised protein	NA	G8C7W1	Escherichia_phage	46.1	2.5e-12
SQI88850.1|2189661_2189862_+	Uncharacterised protein	NA	A0A286SGR9	Klebsiella_phage	74.2	2.8e-21
>prophage 4
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	2193354	2224421	5859982	capsid,tail,head,portal,terminase	Enterobacteria_phage(58.06%)	32	NA	NA
SQI88872.1|2193354_2193774_+	Uncharacterised protein	NA	Q6UAS0	Klebsiella_phage	53.6	2.3e-33
SQI88875.1|2194067_2194613_+	Phage DNA packaging protein Nu1	NA	A0A0K2FIG2	Enterobacteria_phage	86.7	4.0e-86
SQI88877.1|2194587_2196510_+|terminase	phage terminase large subunit	terminase	E4WL19	Enterobacteria_phage	89.5	0.0e+00
SQI88879.1|2196509_2196716_+	gpW	NA	K7PM10	Enterobacteria_phage	88.1	6.7e-26
SQI88882.1|2196712_2198305_+|portal	phage portal protein, lambda family	portal	E4WL21	Enterobacteria_phage	87.2	5.7e-274
SQI88884.1|2198285_2198483_+	Uncharacterised protein	NA	E4WL22	Enterobacteria_phage	88.9	4.4e-19
SQI88887.1|2198469_2198949_+	serine peptidase	NA	O64320	Escherichia_phage	83.5	4.4e-44
SQI88890.1|2198920_2199403_+	serine peptidase	NA	A0A0K2FI53	Enterobacteria_phage	61.3	9.1e-42
SQI88891.1|2199629_2199962_+|head	Bacteriophage lambda head decoration protein D	head	E4WL24	Enterobacteria_phage	79.1	1.1e-43
SQI88895.1|2200028_2201054_+|capsid	Phage major capsid protein E	capsid	K7P6G7	Enterobacteria_phage	92.7	1.2e-179
SQI88897.1|2201105_2201213_+	Uncharacterised protein	NA	A0A0K2FIR1	Enterobacteria_phage	76.5	3.9e-06
SQI88900.1|2201202_2201514_+	Uncharacterised protein	NA	K7P7M3	Enterobacteria_phage	40.4	1.2e-07
SQI88903.1|2201524_2201878_+	Phage Head-Tail Attachment	NA	K7PHD8	Enterobacteria_phage	65.8	9.6e-41
SQI88905.1|2201886_2202471_+|tail	prophage minor tail Z family protein	tail	M9NZH5	Enterobacteria_phage	78.4	8.7e-79
SQI88906.1|2202467_2202866_+|tail	minor tail protein U	tail	K7P7G5	Enterobacteria_phage	73.5	8.6e-54
SQI88908.1|2203038_2203617_+	Bacterial Ig-like domain (group 2)	NA	K7PKX6	Enterobacterial_phage	83.0	6.4e-74
SQI88911.1|2203627_2204056_+	gp14	NA	M9NZD7	Enterobacteria_phage	59.3	1.7e-36
SQI88914.1|2204375_2205749_+|tail	Prophage tail length tape measure	tail	E4WL33	Enterobacteria_phage	75.3	6.2e-168
SQI88916.1|2205703_2207521_+|tail	phage tail tape measure protein, lambda family	tail	E4WL33	Enterobacteria_phage	67.1	1.7e-213
SQI88919.1|2207571_2207919_+|tail	phage minor tail protein	tail	K7PJT2	Enterobacteria_phage	65.2	6.4e-37
SQI88921.1|2207915_2208671_+	gp18	NA	Q6UAW5	Klebsiella_phage	86.1	1.1e-131
SQI88924.1|2208672_2209410_+	gp19	NA	Q6UAW4	Klebsiella_phage	90.6	2.2e-135
SQI88927.1|2209777_2210368_+|tail	bacteriophage lambda tail assembly I	tail	K7PHE5	Enterobacteria_phage	75.0	5.7e-78
SQI88930.1|2210441_2211074_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88933.1|2211236_2213228_+	gp24	NA	Q6UAW1	Klebsiella_phage	94.1	0.0e+00
SQI88936.1|2213244_2218476_+	gp24	NA	A0A0P0IKE4	Klebsiella_phage	38.1	3.1e-151
SQI88939.1|2218441_2220247_+	Gp21	NA	A0A0P0IKE4	Klebsiella_phage	34.2	1.6e-38
SQI88942.1|2220581_2221787_+|tail	putative phage tail protein	tail	A0A0D4D9I5	Escherichia_phage	30.5	1.4e-19
SQI88945.1|2222291_2222531_+	Uncharacterised protein	NA	I6PD82	Cronobacter_phage	54.4	2.8e-20
SQI88947.1|2222533_2222833_+	Uncharacterised protein	NA	K7PGV5	Enterobacterial_phage	51.0	1.8e-19
SQI88950.1|2223208_2224075_+	D-alanyl-D-alanine carboxypeptidase fraction C	NA	B6DZZ7	Stx2-converting_phage	52.3	4.0e-72
SQI88954.1|2224046_2224421_+	D-alanyl-D-alanine carboxypeptidase fraction C	NA	B6DZZ7	Stx2-converting_phage	36.4	4.3e-15
>prophage 5
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	2583554	2658168	5859982	plate,transposase,tRNA,capsid,tail,portal,integrase,terminase	Enterobacteria_phage(51.22%)	93	2616765:2616781	2652895:2652911
SQI90930.1|2583554_2584577_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI90931.1|2584938_2585220_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90932.1|2585270_2586317_-	ABC transporter	NA	NA	NA	NA	NA
SQI90933.1|2586313_2587099_-	spermidine/putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
SQI90934.1|2587095_2587953_-	Spermidine Putrescine ABC transporter permease PotB	NA	NA	NA	NA	NA
SQI90935.1|2587936_2589073_-	putrescine transport ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	42.0	1.7e-30
SQI90936.1|2589330_2590560_+	Tripeptide aminopeptidase	NA	NA	NA	NA	NA
SQI90937.1|2590607_2591729_-	putative enzyme	NA	NA	NA	NA	NA
SQI90938.1|2591815_2593045_-	sensor protein PhoQ	NA	NA	NA	NA	NA
SQI90939.1|2593064_2593283_-	sensor protein PhoQ	NA	NA	NA	NA	NA
SQI90940.1|2593279_2593525_-	DNA-binding transcriptional regulator PhoP	NA	NA	NA	NA	NA
SQI90941.1|2594142_2594394_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI90942.1|2594852_2595806_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQI90943.1|2595855_2597226_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	2.1e-107
SQI90944.1|2597229_2597871_-	putative lysogenization regulator	NA	NA	NA	NA	NA
SQI90945.1|2597930_2598332_-	thiouridylase	NA	NA	NA	NA	NA
SQI90946.1|2598363_2599083_-	thiouridylase	NA	NA	NA	NA	NA
SQI90947.1|2599076_2599553_-	Nudix-like NDP and NTP phosphohydrolase YmfB	NA	NA	NA	NA	NA
SQI90948.1|2599573_2600224_-	ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA	NA
SQI90949.1|2600460_2601711_+	Isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	4.4e-19
SQI90950.1|2601807_2602146_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90951.1|2602342_2602783_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	44.1	1.1e-20
SQI90952.1|2602799_2604113_-	diguanylate cyclase	NA	NA	NA	NA	NA
SQI90953.1|2604208_2605396_-	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
SQI90954.1|2605674_2606718_+	L-asparaginase, type II	NA	NA	NA	NA	NA
SQI90955.1|2606626_2607112_-	iron(III) dicitrate transport ATP-binding protein FecE	NA	NA	NA	NA	NA
SQI90956.1|2607108_2607480_-	iron(III) dicitrate transport system periplasmic iron-binding protein FecB	NA	NA	NA	NA	NA
SQI90957.1|2607560_2609891_-	iron(III) dicitrate transport protein FecA	NA	NA	NA	NA	NA
SQI90958.1|2609989_2610937_-	iron(III) dicitrate transmembrane sensor protein FecR	NA	NA	NA	NA	NA
SQI90959.1|2610933_2611455_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
SQI90960.1|2611712_2612501_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQI90961.1|2613038_2613503_+	lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	48.0	1.3e-21
SQI90962.1|2613477_2613954_+	lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	52.5	1.5e-41
SQI90963.1|2614043_2614682_+	transport protein	NA	NA	NA	NA	NA
SQI90964.1|2614810_2615074_+	inner membrane protein	NA	NA	NA	NA	NA
SQI90965.1|2615462_2615564_-	membrane protein	NA	NA	NA	NA	NA
SQI90966.1|2615621_2616635_-	GAF domain/diguanylate cyclase	NA	NA	NA	NA	NA
2616765:2616781	attL	AAAAAAGCCCCGTCGGG	NA	NA	NA	NA
SQI90967.1|2617147_2617882_-|integrase	integrase	integrase	Q83VS6	Escherichia_phage	80.6	4.1e-110
SQI90968.1|2617997_2618297_-	Uncharacterised protein	NA	Q1JS61	Enterobacteria_phage	77.8	6.5e-38
SQI90969.1|2618417_2618684_+	Regulatory phage protein cox	NA	Q1JS60	Enterobacteria_phage	84.4	4.4e-14
SQI90970.1|2618717_2618936_+	Uncharacterised protein	NA	A0A0M5M1I3	Salmonella_phage	49.1	4.7e-06
SQI90971.1|2618951_2619329_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90972.1|2619344_2619479_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90973.1|2619686_2619911_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90974.1|2619907_2620486_+	exodeoxyribonuclease VIII	NA	A0A192Y6E0	Salmonella_phage	40.0	8.4e-34
SQI90975.1|2620574_2621594_+	phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA	B7SYG0	Stenotrophomonas_phage	42.9	1.9e-65
SQI90976.1|2621590_2621764_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90977.1|2621763_2622399_+	Uncharacterised protein	NA	A0A0M4RTM8	Salmonella_phage	42.0	1.3e-35
SQI90978.1|2622505_2624383_+	gp36	NA	A0A0M4RTM8	Salmonella_phage	53.1	5.0e-128
SQI90979.1|2624379_2624637_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90980.1|2624954_2625878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90981.1|2625861_2626455_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90982.1|2627015_2627222_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90983.1|2627740_2628241_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90984.1|2628272_2629061_-|portal	phage portal protein, PBSX family	portal	A0A0A7NPT9	Enterobacteria_phage	73.5	7.8e-115
SQI90985.1|2629113_2629320_-|portal	phage portal protein, PBSX family	portal	A0A0A7NPT9	Enterobacteria_phage	52.5	1.3e-10
SQI90986.1|2629322_2629991_-|terminase	terminase, ATPase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	66.1	5.3e-80
SQI90987.1|2629947_2631051_-|terminase	terminase, ATPase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	69.0	6.1e-142
SQI90988.1|2631208_2632048_+|capsid	Presumed capsid scaffolding protein (GpO)	capsid	A0A0A7NRY7	Enterobacteria_phage	67.0	3.9e-96
SQI90989.1|2632057_2632153_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90990.1|2632193_2633093_+|capsid	phage capsid protein	capsid	A0A0M3ULA3	Salmonella_phage	50.0	2.9e-81
SQI90991.1|2633142_2633334_+	Uncharacterised protein	NA	B9A7B6	Serratia_phage	63.3	1.5e-11
SQI90992.1|2633404_2634010_+|terminase	phage terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	61.9	1.0e-42
SQI90993.1|2634113_2634629_+|capsid	capsid completion protein	capsid	A0A0A7NPU2	Enterobacteria_phage	50.0	1.8e-40
SQI90994.1|2634628_2634985_+|tail	phage tail protein X	tail	A0A0A7NV57	Enterobacteria_phage	67.4	1.4e-10
SQI90995.1|2635102_2635612_+	lysozyme	NA	Q1I0Z1	Pasteurella_virus	41.3	1.4e-27
SQI90996.1|2635850_2636171_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI90997.1|2636272_2636641_+|tail	phage tail completion protein R	tail	A0A0A7NPU6	Enterobacteria_phage	60.0	1.4e-34
SQI90998.1|2636637_2637108_+|tail	phage tail completion protein	tail	A0A0A7NV60	Enterobacteria_phage	49.0	6.8e-34
SQI90999.1|2637064_2637274_+|tail	putative prophage, tail completion protein	tail	A0A0A7NV60	Enterobacteria_phage	51.5	2.9e-13
SQI91000.1|2637270_2637858_+|plate	baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	60.0	1.5e-59
SQI91001.1|2637854_2638205_+|plate	phage baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	55.7	2.7e-27
SQI91002.1|2638206_2639130_+|plate	baseplate assembly protein J	plate	A0A0A7NPY5	Enterobacteria_phage	43.6	7.6e-53
SQI91003.1|2639119_2642149_+|tail	putative prophage tail protein	tail	D5LGZ2	Escherichia_phage	40.7	6.4e-24
SQI91004.1|2642145_2642304_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91005.1|2642346_2643444_+	Tail fiber protein	NA	A0A0M3ULH6	Salmonella_phage	29.0	1.9e-10
SQI91006.1|2643696_2645442_-	AIPR protein	NA	NA	NA	NA	NA
SQI91007.1|2645553_2646021_-|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	62.1	2.7e-51
SQI91008.1|2646036_2646675_-	Uncharacterised protein	NA	A0A0A7NRZ9	Enterobacteria_phage	42.4	2.1e-33
SQI91009.1|2646871_2648254_-	phage protein	NA	B9A7B3	Serratia_phage	63.1	1.7e-96
SQI91010.1|2648303_2649014_-|tail	phage tail tape measure protein	tail	B9A7B3	Serratia_phage	56.5	8.7e-57
SQI91011.1|2649158_2649476_-|tail	phage tail protein E	tail	A0A0A7NPZ0	Enterobacteria_phage	46.8	2.2e-12
SQI91012.1|2649521_2650037_-|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	61.8	2.2e-57
SQI91013.1|2650036_2651209_-|tail	phage tail sheath protein	tail	A0A0A7NV69	Enterobacteria_phage	70.5	1.1e-157
SQI91014.1|2651363_2652503_+	late control gene D protein	NA	B9A7A9	Serratia_phage	70.5	1.8e-144
SQI91015.1|2653061_2653301_+	putative lipoprotein	NA	NA	NA	NA	NA
2652895:2652911	attR	AAAAAAGCCCCGTCGGG	NA	NA	NA	NA
SQI91016.1|2653304_2653652_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQI91017.1|2653638_2654148_-	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQI91018.1|2654310_2655003_+	CTP synthase	NA	NA	NA	NA	NA
SQI91019.1|2655040_2656225_-	cyanate transporter	NA	NA	NA	NA	NA
SQI91020.1|2656325_2657117_+	transcriptional regulator	NA	NA	NA	NA	NA
SQI91021.1|2657100_2657547_-	inner membrane protein	NA	NA	NA	NA	NA
SQI91022.1|2657631_2658168_-|tRNA	YbaK/prolyl-tRNA synthetase-associated domain protein	tRNA	NA	NA	NA	NA
>prophage 6
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	2854551	2902041	5859982	transposase,tRNA,capsid,tail,head,portal,integrase,protease,terminase	Klebsiella_phage(43.64%)	68	2850863:2850877	2866859:2866873
2850863:2850877	attL	CTATATGGCGGCTTT	NA	NA	NA	NA
SQI91372.1|2854551_2855844_-|integrase,transposase	putative transposase/integrase	integrase,transposase	Q8W658	Enterobacteria_phage	65.2	4.0e-169
SQI91409.1|2855895_2856135_-	Putative excisionase (DUF1233)	NA	Q8W657	Enterobacteria_phage	82.1	6.5e-33
SQI91412.1|2856142_2856289_-	Uncharacterised protein	NA	H6WZF8	Escherichia_phage	75.0	9.2e-14
SQI91417.1|2856360_2856663_-	Uncharacterised protein	NA	A0A1B5FPC7	Escherichia_phage	71.4	6.6e-14
SQI91421.1|2856659_2856884_-	Uncharacterised protein	NA	A0A286S2B3	Klebsiella_phage	79.7	3.6e-25
SQI91425.1|2856880_2857006_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91429.1|2856989_2857427_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91433.1|2857416_2858121_-	DNA-binding protein Roi	NA	A0A286S260	Klebsiella_phage	87.3	6.3e-108
SQI91437.1|2858129_2858711_-	2-polyprenylphenol hydroxylase related flavodoxin oxidoreductase	NA	A0A286S1S7	Klebsiella_phage	80.3	2.3e-87
SQI91441.1|2858691_2859123_-	Uncharacterised protein	NA	A0A286S1S2	Klebsiella_phage	93.6	1.7e-71
SQI91445.1|2859207_2859564_-	Uncharacterised protein	NA	A0A286SGR4	Klebsiella_phage	89.3	2.5e-36
SQI91449.1|2859556_2859922_-	Uncharacterised protein	NA	A0A286S1Q6	Klebsiella_phage	99.2	6.9e-58
SQI91453.1|2860091_2860280_-	Uncharacterised protein	NA	A0A286S1P8	Klebsiella_phage	100.0	4.6e-26
SQI91457.1|2860272_2860587_-	Uncharacterised protein	NA	A0A286S1T9	Klebsiella_phage	99.0	1.3e-49
SQI91460.1|2860667_2861006_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91463.1|2861312_2861480_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91466.1|2861523_2861745_+	helix-turn-helix domain-containing protein	NA	A0A286S2C1	Klebsiella_phage	98.6	8.7e-32
SQI91469.1|2861719_2862013_+	Uncharacterised protein	NA	A0A286S2B5	Klebsiella_phage	95.1	4.1e-37
SQI91470.1|2862319_2863972_+	putative helicase	NA	A0A286N2P9	Klebsiella_phage	80.8	1.7e-273
SQI91473.1|2863973_2864936_+	putative phage DNA primase	NA	A0A286N2Q0	Klebsiella_phage	97.5	4.5e-181
SQI91476.1|2864932_2865715_+	antitermination protein	NA	A0A286N2Q2	Klebsiella_phage	88.1	4.1e-132
SQI91479.1|2866001_2866499_-	Uncharacterised protein	NA	A0A077K9U2	Edwardsiella_phage	50.3	3.6e-33
SQI91482.1|2866595_2866799_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91483.1|2867408_2867720_+	drug/metabolite transporter (DMT) superfamily permease	NA	A0A286N2Q5	Klebsiella_phage	99.0	2.5e-48
2866859:2866873	attR	AAAGCCGCCATATAG	NA	NA	NA	NA
SQI91484.1|2867716_2868259_+	Predicted lysozyme (DUF847)	NA	A0A286N2Q6	Klebsiella_phage	77.5	6.8e-78
SQI91485.1|2868261_2868600_+	Uncharacterised protein	NA	A0A286N2Q7	Klebsiella_phage	83.9	5.8e-43
SQI91486.1|2868596_2868872_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91487.1|2868816_2869014_+	Uncharacterised protein	NA	A0A286SGR9	Klebsiella_phage	86.0	1.6e-21
SQI91493.1|2869714_2869915_+	Uncharacterised protein	NA	A0A1L6Z528	Klebsiella_phage	73.3	7.6e-19
SQI91495.1|2869979_2870225_+	Protein of uncharacterised function (DUF2560)	NA	A0A286N2R1	Klebsiella_phage	58.0	8.8e-17
SQI91496.1|2870386_2870716_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91497.1|2870737_2871100_+	HNH endonuclease	NA	K7P7P4	Enterobacteria_phage	76.1	3.4e-49
SQI91499.1|2871283_2871847_+	NUMOD4 motif	NA	A0A0A0RV67	Bacillus_phage	25.9	9.1e-09
SQI91502.1|2871935_2872400_+|terminase	phage terminase small subunit	terminase	Q9B019	Phage_GMSE-1	61.4	3.7e-48
SQI91505.1|2872353_2874090_+|terminase	phage terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	45.2	4.0e-140
SQI91507.1|2874089_2875364_+|portal	phage portal protein	portal	Q77W97	Enterobacteria_phage	84.7	2.4e-214
SQI91508.1|2875381_2876062_+|head,protease	phage prohead protease	head,protease	K7PKL4	Enterobacterial_phage	78.9	9.7e-98
SQI91509.1|2876063_2877230_+|capsid	phage major capsid protein	capsid	F1C582	Cronobacter_phage	85.1	1.1e-184
SQI91510.1|2877261_2877588_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
SQI91511.1|2877587_2877926_+|head,tail	head-tail adaptor protein	head,tail	K7P7L2	Enterobacteria_phage	65.2	4.0e-36
SQI91523.1|2877922_2878372_+	phage protein, HK97 gp10 family	NA	Q9MCS9	Enterobacteria_phage	83.2	1.0e-63
SQI91525.1|2878368_2878716_+	Protein of uncharacterised function (DUF3168)	NA	K7PKL6	Enterobacterial_phage	61.1	1.4e-31
SQI91527.1|2878772_2879483_+|tail	tail protein	tail	K7PHL2	Enterobacterial_phage	68.2	1.1e-83
SQI91529.1|2879513_2879918_+|tail	phage tail assembly chaperone	tail	Q9MCS5	Enterobacteria_phage	56.5	2.5e-32
SQI91531.1|2879920_2880226_+|tail	phage tail protein	tail	Q9MCS5	Enterobacteria_phage	65.0	9.5e-29
SQI91533.1|2880276_2880462_+	Uncharacterised protein	NA	K7PH36	Enterobacterial_phage	77.0	1.9e-19
SQI91535.1|2880503_2881628_+|tail	tail length tape measure protein	tail	K7P7L6	Enterobacteria_phage	82.6	6.3e-126
SQI91537.1|2881674_2882769_+|tail	tail length tape measure protein	tail	Q9MCS3	Enterobacteria_phage	69.4	8.8e-117
SQI91539.1|2882854_2883862_+|tail	tail length tape measure protein	tail	A0A2H4JHR1	uncultured_Caudovirales_phage	29.2	1.2e-22
SQI91541.1|2883882_2884356_+	membrane protein	NA	A0A286S298	Klebsiella_phage	62.7	6.4e-56
SQI91543.1|2884342_2884819_+	ArsR family transcriptional regulator	NA	A0A286S2B1	Klebsiella_phage	65.8	1.1e-50
SQI91544.1|2884831_2885212_+	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	84.9	1.1e-61
SQI91546.1|2885208_2888286_+	kinase	NA	A0A286S259	Klebsiella_phage	61.6	0.0e+00
SQI91548.1|2888364_2891331_+	flagellar biosynthesis, cell-distal portion of basal-body rod	NA	A0A286S1P0	Klebsiella_phage	72.0	8.1e-40
SQI91550.1|2891340_2892069_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91552.1|2892187_2892505_+	Error-prone repair protein UmuD	NA	K7PGV5	Enterobacterial_phage	50.0	2.4e-22
SQI91554.1|2893654_2894638_+	zinc transporter	NA	NA	NA	NA	NA
SQI91556.1|2895106_2896210_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.6	6.1e-33
SQI91558.1|2896206_2896497_+	ATP-dependent RNA helicase DbpA	NA	NA	NA	NA	NA
SQI91560.1|2896541_2897255_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	95.6	6.8e-102
SQI91562.1|2897196_2897478_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	87.5	1.1e-23
SQI91564.1|2898431_2899370_+|protease	protease VII (Omptin)	protease	NA	NA	NA	NA
SQI91566.1|2899576_2899867_-	Bor family protein	NA	C6ZCX3	Enterobacteria_phage	63.9	1.4e-29
SQI91568.1|2900052_2900487_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	51.4	7.2e-30
SQI91570.1|2900600_2900783_-	KTSC domain protein	NA	NA	NA	NA	NA
SQI91572.1|2900932_2901412_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	55.8	5.3e-42
SQI91574.1|2901374_2901890_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	68.3	2.9e-46
SQI91576.1|2901837_2902041_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	62.1	5.8e-14
>prophage 7
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	2906402	2911956	5859982		Enterobacterial_phage(33.33%)	9	NA	NA
SQI91584.1|2906402_2907104_+	phage repressor	NA	K7PKK1	Enterobacteria_phage	40.0	5.1e-33
SQI91586.1|2907565_2907928_+	phage anti-termination protein N	NA	C6ZR44	Salmonella_phage	55.8	1.5e-28
SQI91588.1|2908004_2908397_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	67.8	7.9e-36
SQI91590.1|2908386_2908659_+	membrane protein	NA	K7PKN9	Enterobacterial_phage	56.6	1.2e-17
SQI91592.1|2908666_2909209_+	Predicted lysozyme (DUF847)	NA	A0A0U2I1S0	Escherichia_phage	64.0	1.9e-67
SQI91594.1|2909438_2909804_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91596.1|2910131_2910404_+	lipoprotein	NA	NA	NA	NA	NA
SQI91598.1|2910400_2910841_-	Heat shock protein hslJ	NA	NA	NA	NA	NA
SQI91600.1|2910966_2911956_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	45.7	1.9e-70
>prophage 8
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	3595678	3637068	5859982	transposase	Brazilian_cedratvirus(33.33%)	43	NA	NA
SQI94143.1|3595678_3596665_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI94144.1|3596844_3597330_-	Thiol-disulfide oxidoreductase resA	NA	NA	NA	NA	NA
SQI94145.1|3597316_3598012_-	metabolite ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	32.9	5.0e-17
SQI94146.1|3598016_3599147_-	outer membrane-specific lipoprotein transporter subunit LolE	NA	NA	NA	NA	NA
SQI94147.1|3599136_3600420_-	macrolide export ATP-binding/permease MacB	NA	NA	NA	NA	NA
SQI94148.1|3600422_3601802_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQI94149.1|3602064_3602592_-	Pathogen-specific membrane antigen	NA	NA	NA	NA	NA
SQI94150.1|3602619_3604494_-	Ferrous iron transport permease EfeU	NA	NA	NA	NA	NA
SQI94151.1|3604811_3605618_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
SQI94152.1|3605885_3606968_+	malate dehydrogenase	NA	NA	NA	NA	NA
SQI94153.1|3607205_3608168_+	formate dehydrogenase H, selenopolypeptide subunit	NA	NA	NA	NA	NA
SQI94154.1|3608121_3609357_+	formate dehydrogenase H, selenopolypeptide subunit	NA	NA	NA	NA	NA
SQI94155.1|3609375_3609903_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI94156.1|3610073_3610835_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI94157.1|3610831_3611098_-|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI94158.1|3611253_3612405_-	N-acyl-L-amino acid amidohydrolase	NA	NA	NA	NA	NA
SQI94159.1|3612687_3613893_+	transporter	NA	NA	NA	NA	NA
SQI94160.1|3613993_3614716_-	histidine ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQI94161.1|3614699_3615467_-	Amino acid ABC transporter	NA	NA	NA	NA	NA
SQI94162.1|3615531_3616302_-	glutamine ABC transporter	NA	NA	NA	NA	NA
SQI94163.1|3616397_3617297_-	RpiR family transcriptional regulator	NA	NA	NA	NA	NA
SQI94164.1|3617293_3618241_-	iron compound-binding protein of ABC transporter family	NA	NA	NA	NA	NA
SQI94171.1|3618257_3618428_-	permease of ferrichrome ABC transporter	NA	NA	NA	NA	NA
SQI94172.1|3618428_3619310_-	permease of ferrichrome ABC transporter	NA	NA	NA	NA	NA
SQI94173.1|3619306_3620347_-	iron compound permease protein of ABC transporter family	NA	NA	NA	NA	NA
SQI94174.1|3620327_3621149_-	transporter	NA	G9BWD6	Planktothrix_phage	30.0	4.3e-15
SQI94175.1|3621707_3622307_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
SQI94176.1|3622330_3623731_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
SQI94177.1|3623988_3624777_-	alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter	NA	G3M9Y6	Bacillus_virus	33.8	7.2e-28
SQI94178.1|3624770_3625766_-	alkanesulfonates transport system permease protein	NA	NA	NA	NA	NA
SQI94179.1|3625746_3626784_-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQI94180.1|3626780_3627755_-	ABC-type nitrate/sulfonate/bicarbonate transport system protein	NA	NA	NA	NA	NA
SQI94181.1|3627766_3629905_-	butyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
SQI94182.1|3630141_3631035_-	putative LysR family regulatory protein	NA	NA	NA	NA	NA
SQI94183.1|3631142_3631739_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SQI94184.1|3631740_3632592_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQI94185.1|3632707_3633322_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQI94186.1|3633387_3634200_-	periplasmic or exported protein	NA	NA	NA	NA	NA
SQI94187.1|3634192_3634405_-	periplasmic or exported protein	NA	NA	NA	NA	NA
SQI94188.1|3635109_3635856_-	membrane protein	NA	NA	NA	NA	NA
SQI94189.1|3636130_3636487_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI94190.1|3636515_3636695_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI94191.1|3636642_3637068_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
>prophage 9
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	4133987	4167618	5859982	protease,transposase	Planktothrix_phage(28.57%)	37	NA	NA
SQI95628.1|4133987_4135349_+|protease	protease	protease	Q6DW11	Phage_TP	91.8	3.6e-200
SQI95629.1|4135592_4136375_+	transcription regulator	NA	A0A1V0SBJ0	Catovirus	30.2	1.4e-15
SQI95631.1|4136487_4136958_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI95632.1|4136944_4137754_-	transcriptional regulator CadC	NA	NA	NA	NA	NA
SQI95634.1|4138172_4138313_-	dipeptide transport ATP-binding protein DppD	NA	NA	NA	NA	NA
SQI95635.1|4138290_4138947_-	dipeptide transport ATP-binding protein DppD	NA	G9BWD6	Planktothrix_phage	40.1	6.6e-27
SQI95637.1|4138957_4139821_-	putative dipeptide ABC transport system ATP-binding component	NA	G9BWD6	Planktothrix_phage	27.5	7.4e-10
SQI95638.1|4139792_4140698_-	dipeptide transport system permease DppC	NA	NA	NA	NA	NA
SQI95639.1|4140694_4141732_-	dipeptide transport system permease DppB	NA	NA	NA	NA	NA
SQI95640.1|4141728_4143300_-	putative dipeptide ABC transport system periplasmic binding component	NA	NA	NA	NA	NA
SQI95642.1|4143470_4144625_-	putative mandelate racemase / muconate lactonizing enzyme	NA	NA	NA	NA	NA
SQI95644.1|4144923_4145229_-	2-deoxyglucose-6-phosphate hydrolase YniC	NA	NA	NA	NA	NA
SQI95645.1|4145194_4145587_-	2-deoxyglucose-6-phosphate hydrolase YniC	NA	NA	NA	NA	NA
SQI95647.1|4145635_4146913_-	ribitol/Xylitol/Arabitol transporter	NA	NA	NA	NA	NA
SQI95648.1|4146982_4148446_-	Xylulose kinase	NA	NA	NA	NA	NA
SQI95649.1|4148455_4149679_-	D-arabinitol dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	31.2	1.8e-33
SQI95651.1|4150028_4150970_+	putative SorC-family transcriptional regulator	NA	NA	NA	NA	NA
SQI95652.1|4150992_4151442_-	ribitol operon repressor	NA	NA	NA	NA	NA
SQI95654.1|4151506_4151995_-	ribitol operon repressor	NA	NA	NA	NA	NA
SQI95655.1|4152252_4152456_+	ribitol 2-dehydrogenase	NA	NA	NA	NA	NA
SQI95656.1|4152427_4152979_+	ribitol 2-dehydrogenase	NA	NA	NA	NA	NA
SQI95658.1|4153035_4154643_+	D-ribulokinase	NA	NA	NA	NA	NA
SQI95660.1|4154784_4155750_-	Fructose-bisphosphate aldolase class I	NA	NA	NA	NA	NA
SQI95661.1|4155898_4156699_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQI95663.1|4156695_4157379_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
SQI95664.1|4157834_4158110_+	hydrolase	NA	NA	NA	NA	NA
SQI95665.1|4158051_4158477_+	hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	59.8	6.6e-36
SQI95667.1|4158677_4159814_+	hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	43.4	8.9e-88
SQI95668.1|4159872_4160808_-	LysR family transcriptional regulator YfeR	NA	NA	NA	NA	NA
SQI95670.1|4160907_4161594_+	putative amidohydrolase	NA	NA	NA	NA	NA
SQI95672.1|4161538_4162720_+	putative amidohydrolase	NA	NA	NA	NA	NA
SQI95674.1|4162722_4164066_+	xanthine/uracil/thiamine/ascorbate permease family protein	NA	NA	NA	NA	NA
SQI95675.1|4164379_4165402_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI95677.1|4166064_4166490_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI95679.1|4166455_4166887_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI95680.1|4166864_4167038_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
SQI95682.1|4167528_4167618_+|transposase	transposase, IS110 family	transposase	NA	NA	NA	NA
>prophage 10
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	4193402	4201034	5859982		Enterobacteria_phage(100.0%)	9	NA	NA
SQI95719.1|4193402_4194539_+	Mg-chelatase subunit ChlD	NA	Q9EYF7	Enterobacteria_phage	85.3	4.4e-143
SQI95720.1|4194535_4195903_+	SWIM zinc finger	NA	Q9EYF6	Enterobacteria_phage	64.5	2.1e-160
SQI95722.1|4195856_4196543_+	Uncharacterised protein	NA	Q9EYF6	Enterobacteria_phage	61.6	1.2e-68
SQI95723.1|4196555_4197017_+	169 kd lipoprotein	NA	NA	NA	NA	NA
SQI95724.1|4197141_4197450_-	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	86.3	8.4e-41
SQI95726.1|4197397_4197610_-	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	66.7	1.7e-16
SQI95727.1|4197663_4198383_-	response regulatory protein yehT	NA	NA	NA	NA	NA
SQI95729.1|4198376_4200065_-	autolysin sensor kinase	NA	Q9EYF3	Enterobacteria_phage	84.3	4.6e-258
SQI95730.1|4200275_4201034_+	HTH-type transcriptional regulator mlrA	NA	Q9EYF2	Enterobacteria_phage	69.8	9.5e-78
>prophage 11
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	4719570	4724863	5859982		Corynebacterium_phage(33.33%)	7	NA	NA
SQI97353.1|4719570_4719816_+	glutaredoxin-like protein NrdH	NA	A0A0E3T8B5	Gordonia_phage	35.8	8.0e-10
SQI97354.1|4719812_4720223_+	ribonucleotide reduction protein NrdI	NA	NA	NA	NA	NA
SQI97355.1|4720195_4720549_+	ribonucleotide reductase of class Ib	NA	A0A096XT50	Enterococcus_phage	45.7	1.1e-15
SQI97356.1|4720589_4721399_+	ribonucleotide reductase of class Ib	NA	A7IYE5	Corynebacterium_phage	66.5	3.5e-86
SQI97357.1|4721346_4722342_+	ribonucleotide reductase of class Ib	NA	A0A2H4P9B7	Corynebacterium_phage	50.9	1.4e-84
SQI97358.1|4722352_4723315_+	ribonucleotide reductase of class Ib	NA	A0A0M4S3B4	Mycobacterium_phage	71.2	1.5e-131
SQI97359.1|4723660_4724863_+	L-proline glycine betaine ABC transport system permease ProV	NA	G3M9Y6	Bacillus_virus	38.7	1.1e-27
>prophage 12
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	5083935	5089308	5859982		uncultured_Caudovirales_phage(66.67%)	11	NA	NA
SQI97932.1|5083935_5084226_+	Nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	48.4	2.6e-15
SQI97933.1|5084209_5084377_+	Uncharacterised protein	NA	A0A2P0ZL88	Lactobacillus_phage	46.8	6.8e-05
SQI97934.1|5084435_5084948_-	putative kinase	NA	NA	NA	NA	NA
SQI97935.1|5085162_5086077_+	MdtM family protein	NA	NA	NA	NA	NA
SQI97936.1|5086081_5086423_+	MdtM family protein	NA	NA	NA	NA	NA
SQI97937.1|5086599_5086965_+	putative phosphinothricin N-acetyltransferase	NA	NA	NA	NA	NA
SQI97938.1|5086945_5087149_+	putative phosphinothricin N-acetyltransferase	NA	NA	NA	NA	NA
SQI97939.1|5087220_5087598_-	Arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	73.4	2.8e-46
SQI97940.1|5087611_5088121_-	Arsenic efflux pump protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	72.9	1.8e-64
SQI97941.1|5088158_5088905_-	Arsenic efflux pump protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.1	8.2e-90
SQI97942.1|5088957_5089308_-	Arsenical resistance operon repressor	NA	A0A2H4J145	uncultured_Caudovirales_phage	48.7	1.6e-24
>prophage 13
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	5859982	5290444	5297332	5859982	transposase	Moraxella_phage(33.33%)	7	NA	NA
SQI98329.1|5290444_5290612_-	YgjD/Kae1/Qri7 family protein	NA	A0A0R6PI74	Moraxella_phage	48.1	1.2e-06
SQI98330.1|5290571_5291459_-	YgjD/Kae1/Qri7 family protein	NA	A0A0R6PI74	Moraxella_phage	61.1	7.2e-93
SQI98331.1|5291696_5291912_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQI98332.1|5292145_5293888_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.9	3.4e-70
SQI98333.1|5294037_5295882_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
SQI98334.1|5295968_5296493_+|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	30.5	5.3e-11
SQI98335.1|5296546_5297332_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.7	6.0e-75
