The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	1149155	1158130	4630342	integrase,capsid	Enterobacteria_phage(85.71%)	10	1153924:1153939	1160745:1160760
SQI75329.1|1149155_1151489_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.5	0.0e+00
SQI75330.1|1151503_1151824_-	putative prophage protein	NA	NA	NA	NA	NA
SQI75336.1|1151820_1152048_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI75341.1|1152044_1152239_-	phage immunity repressor protein	NA	Q7M2A7	Enterobacteria_phage	83.9	4.6e-21
SQI75342.1|1152592_1152859_-	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	69.3	3.7e-29
SQI75357.1|1153396_1154134_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	64.4	9.0e-81
1153924:1153939	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
SQI75362.1|1154130_1154373_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	77.8	5.2e-30
SQI75368.1|1154389_1154956_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.2	4.1e-57
SQI75374.1|1155487_1156897_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI75380.1|1156933_1158130_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.0	4.1e-107
1160745:1160760	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 2
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	1691351	1700522	4630342	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQI77411.1|1691351_1692299_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
SQI77414.1|1692282_1693014_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI77417.1|1692994_1693102_-	membrane protein	NA	NA	NA	NA	NA
SQI77461.1|1693161_1693893_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI77471.1|1694115_1695801_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQI77474.1|1695797_1696517_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI77480.1|1696563_1697031_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQI77490.1|1697087_1697618_-	lipoprotein	NA	NA	NA	NA	NA
SQI77493.1|1697789_1698248_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
SQI77494.1|1698488_1700522_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	1968522	1974880	4630342	integrase,tail	Salmonella_phage(33.33%)	10	1962965:1962979	1973239:1973253
1962965:1962979	attL	AATGACGTGTGAACG	NA	NA	NA	NA
SQI79041.1|1968522_1968753_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQI79043.1|1968890_1969265_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQI79045.1|1969265_1970141_+	membrane protein	NA	NA	NA	NA	NA
SQI79047.1|1970157_1970511_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQI79049.1|1970913_1971738_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	1.1e-71
SQI79051.1|1972067_1972712_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	2.2e-27
SQI79053.1|1972765_1973299_+	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
1973239:1973253	attR	AATGACGTGTGAACG	NA	NA	NA	NA
SQI79055.1|1973555_1973723_-	lytic enzyme	NA	NA	NA	NA	NA
SQI79057.1|1974030_1974294_+	DNA breaking-rejoining protein	NA	Q9EYD0	Enterobacteria_phage	59.8	2.0e-19
SQI79062.1|1974448_1974880_+|tail	caudovirales tail fibre assembly protein	tail	A0A0M4QWS3	Salmonella_phage	90.4	3.3e-59
>prophage 4
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	3277122	3336543	4630342	transposase,tRNA,protease	Bacillus_phage(23.08%)	52	NA	NA
SQI84743.1|3277122_3278040_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI84744.1|3278036_3278489_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI84745.1|3278489_3278906_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI84746.1|3279015_3281517_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	2.3e-112
SQI84747.1|3281670_3282498_+	Secreted protein	NA	NA	NA	NA	NA
SQI84748.1|3283579_3284059_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI84749.1|3284175_3285828_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI84750.1|3286000_3287221_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI84751.1|3287435_3289112_+	transport protein	NA	NA	NA	NA	NA
SQI84752.1|3289160_3290510_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI84753.1|3290617_3291589_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	8.6e-15
SQI84754.1|3291585_3292548_-	ferrochelatase	NA	NA	NA	NA	NA
SQI84755.1|3292777_3293422_-	adenylate kinase	NA	NA	NA	NA	NA
SQI84756.1|3293837_3295712_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQI84757.1|3295822_3296428_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI84758.1|3296427_3296757_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI84759.1|3298844_3299396_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI84760.1|3299548_3299926_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI84761.1|3300006_3300522_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI84762.1|3300535_3300703_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI84763.1|3300772_3301228_+	Transposase_31	NA	Q2A0A7	Sodalis_phage	54.9	3.1e-39
SQI84764.1|3301329_3301821_+|transposase	Putative transposase	transposase	Q2A0A7	Sodalis_phage	48.0	4.6e-17
SQI84765.1|3301862_3305225_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI84766.1|3305343_3305997_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI84767.1|3306138_3307332_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI84768.1|3307354_3310504_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI84769.1|3310999_3311374_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI84770.1|3311401_3311620_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI84771.1|3311798_3312350_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI84772.1|3312466_3312937_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI84773.1|3312992_3313133_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQI84774.1|3313138_3313399_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI84775.1|3313623_3315174_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI84776.1|3315482_3315794_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI84777.1|3315826_3316396_-	lipoprotein	NA	NA	NA	NA	NA
SQI84778.1|3316610_3317471_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI84779.1|3317570_3318857_-	ammonium transporter	NA	NA	NA	NA	NA
SQI84780.1|3318888_3319227_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI84781.1|3319439_3321221_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.9	2.4e-39
SQI84782.1|3321213_3322986_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQI84783.1|3323026_3323485_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI84784.1|3323597_3324653_+	lyase	NA	NA	NA	NA	NA
SQI84785.1|3324702_3325521_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI84786.1|3325621_3327322_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI84787.1|3327386_3328082_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.9	3.2e-88
SQI84788.1|3328187_3328586_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI84789.1|3328689_3329064_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI84790.1|3329213_3331085_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI84791.1|3331375_3331648_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI84792.1|3331856_3334211_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQI84793.1|3334396_3335668_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQI84794.1|3335919_3336543_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 5
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	4074275	4126455	4630342	transposase,tRNA,protease	Vibrio_phage(20.0%)	48	NA	NA
SQI86357.1|4074275_4075007_-|tRNA	putative tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
SQI86358.1|4075097_4077536_-	ribonuclease R (RNase R)	NA	Q0GXV6	Lactococcus_phage	33.1	9.9e-68
SQI86359.1|4077573_4077999_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI86400.1|4078218_4079517_-	adenylosuccinate synthetase	NA	W5S5V7	Pithovirus	35.6	4.9e-66
SQI86401.1|4079619_4079817_-	membrane protein	NA	NA	NA	NA	NA
SQI86417.1|4079895_4080900_-|protease	FtsH protease regulator HflC	protease	NA	NA	NA	NA
SQI86429.1|4080902_4082162_-|protease	protease	protease	NA	NA	NA	NA
SQI86430.1|4082376_4083657_-|protease	GTP-binding subunit of protease	protease	NA	NA	NA	NA
SQI86431.1|4083728_4084037_-	host factor-I protein(HF-I)	NA	NA	NA	NA	NA
SQI86432.1|4084119_4085070_-|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	tRNA	NA	NA	NA	NA
SQI86433.1|4085062_4086919_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	42.1	1.2e-60
SQI86434.1|4086928_4088251_-	N-acetylmuramoyl-l-alanine amidase II	NA	A0A067ZJB6	Vibrio_phage	29.2	1.8e-15
SQI86490.1|4088267_4088729_-	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA	NA
SQI86592.1|4088700_4090245_-	carbohydrate kinase	NA	NA	NA	NA	NA
SQI86593.1|4090246_4091386_+	Fe-S protein	NA	NA	NA	NA	NA
SQI86594.1|4092231_4092972_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI86595.1|4093033_4093579_-	Oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.6	4.5e-29
SQI86596.1|4093685_4094738_+	ribosome-associated GTPase	NA	NA	NA	NA	NA
SQI86597.1|4094829_4095798_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
SQI86598.1|4095816_4099143_+	Potassium efflux system KefA protein	NA	NA	NA	NA	NA
SQI86599.1|4099209_4099524_-	inner membrane protein YjeO	NA	NA	NA	NA	NA
SQI86600.1|4099575_4101078_-	amino acid permease	NA	NA	NA	NA	NA
SQI86601.1|4101303_4102281_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A2K9KZX5	Tupanvirus	29.1	1.7e-26
SQI86602.1|4102603_4104394_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA	NA
SQI86603.1|4104386_4105121_+	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA	NA
SQI86604.1|4105131_4105527_+	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA	NA
SQI86605.1|4105537_4105897_+	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA	NA
SQI86606.1|4106008_4106542_+	lipoprotein	NA	A0A1W6JNX6	Morganella_phage	54.8	9.4e-48
SQI86607.1|4106558_4106876_-	SugE protein	NA	NA	NA	NA	NA
SQI86608.1|4107132_4107720_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
SQI86609.1|4108199_4108766_-	Elongation factor P EF-P	NA	NA	NA	NA	NA
SQI86610.1|4108806_4109835_+	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA	NA
SQI86611.1|4110117_4110975_+	inner membrane protein	NA	NA	NA	NA	NA
SQI86612.1|4111022_4111376_-	membrane protein	NA	NA	NA	NA	NA
SQI86613.1|4111610_4113257_-	GroEL protein	NA	A0A2I7SAK5	Vibrio_phage	68.7	1.2e-189
SQI86614.1|4113300_4113594_-	GroES protein	NA	K4F9I2	Cronobacter_phage	43.3	1.2e-12
SQI86615.1|4113848_4115111_+	transporter	NA	NA	NA	NA	NA
SQI86616.1|4115169_4115685_-	FxsA protein	NA	NA	NA	NA	NA
SQI86617.1|4115986_4117423_+	aspartate ammonia-lyase	NA	NA	NA	NA	NA
SQI86618.1|4117537_4118839_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
SQI86619.1|4118959_4119307_+	Divalent cation tolerance protein	NA	NA	NA	NA	NA
SQI86620.1|4119282_4120986_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA	NA
SQI86621.1|4121022_4121598_+	transcriptional regulator	NA	NA	NA	NA	NA
SQI86622.1|4122499_4123252_+	acid phosphatase	NA	NA	NA	NA	NA
SQI86623.1|4123394_4123928_+|transposase	transposase IS1113	transposase	NA	NA	NA	NA
SQI86624.1|4123989_4124280_+|transposase	putative transposase for insertion sequence element ISRM3-like protein	transposase	A0A218MNI5	uncultured_virus	77.1	1.8e-08
SQI86625.1|4124528_4125530_-	putative periplasmic protein	NA	NA	NA	NA	NA
SQI86626.1|4126248_4126455_-|transposase	transposase insF	transposase	NA	NA	NA	NA
>prophage 6
LS483479	Salmonella enterica subsp. enterica serovar Infantis strain NCTC6703 genome assembly, chromosome: 1	4630342	4223761	4268284	4630342	plate,tRNA,tail	Burkholderia_phage(40.0%)	44	NA	NA
SQI86958.1|4223761_4224760_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQI86960.1|4224847_4226158_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQI86962.1|4226404_4226920_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQI86964.1|4227018_4227231_-	stress-response protein	NA	NA	NA	NA	NA
SQI86966.1|4227249_4227378_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI86968.1|4227359_4228685_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQI86970.1|4228863_4229472_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQI86972.1|4229580_4229949_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQI86974.1|4230119_4232540_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQI86976.1|4232638_4233511_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQI86978.1|4233524_4234022_-	chorismate lyase	NA	NA	NA	NA	NA
SQI86980.1|4234202_4235120_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQI86982.1|4235283_4236642_-	maltoporin	NA	NA	NA	NA	NA
SQI86984.1|4236730_4237840_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQI86986.1|4238201_4239392_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQI86988.1|4239523_4241068_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI86990.1|4241082_4241973_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI86992.1|4242138_4242549_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
SQI86994.1|4242691_4244788_-	lipoprotein	NA	NA	NA	NA	NA
SQI86996.1|4244787_4245522_-	putative lipoprotein	NA	NA	NA	NA	NA
SQI86998.1|4245518_4246157_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQI87000.1|4246220_4246466_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQI87002.1|4246906_4248556_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQI87004.1|4248900_4250250_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQI87006.1|4250380_4250728_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
SQI87008.1|4251304_4251592_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
SQI87010.1|4251627_4252200_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	59.4	6.8e-60
SQI87012.1|4252212_4252527_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
SQI87014.1|4252686_4253142_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI87016.1|4253138_4253336_+	gp12	NA	Q6QIB1	Burkholderia_phage	50.0	1.3e-07
SQI87018.1|4253325_4254753_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	70.9	3.1e-194
SQI87021.1|4254752_4255277_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
SQI87023.1|4255328_4255646_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87025.1|4255830_4258185_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	30.4	4.4e-65
SQI87026.1|4258184_4259138_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
SQI87028.1|4259137_4259347_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	2.2e-16
SQI87030.1|4259334_4260378_+	gp21	NA	A4JWL3	Burkholderia_virus	45.6	1.9e-76
SQI87032.1|4260387_4261110_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQI87034.1|4261796_4262726_+	bactoprenol glucosyl transferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
SQI87036.1|4262725_4264273_+	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
SQI87038.1|4264436_4264796_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
SQI87040.1|4264786_4265902_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
SQI87042.1|4265894_4266527_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	56.4	8.6e-24
SQI87044.1|4266529_4268284_+|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	4.2e-52
