assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478225.1_47328_C01	LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	2	1014234-1015485	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	29,29,29	1	1	1015425-1015456	LS483477.1_840387-840356	I-E:I-E:I-E	19,20,20	20	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|447aa|up_9|LS483477.1_998627_999968_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|LS483477.1_999988_1001329_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|LS483477.1_1001406_1002549_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|LS483477.1_1002621_1005378_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|LS483477.1_1005435_1006731_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|LS483477.1_1006782_1009017_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|LS483477.1_1009091_1009883_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LS483477.1_1010110_1011748_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483477.1_1011830_1013129_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483477.1_1013265_1013937_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LS483477.1_1015582_1016380_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483477.1_1016469_1016832_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483477.1_1017259_1019059_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483477.1_1019058_1020771_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483477.1_1020786_1021521_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483477.1_1021608_1022562_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|899aa|down_6|LS483477.1_1022945_1025642_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_7|LS483477.1_1025806_1026106_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_8|LS483477.1_1026115_1026457_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|down_9|LS483477.1_1026811_1028347_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_900478225.1_47328_C01	LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	3	1032784-1035130	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	38,38	38	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	cas3|899aa|up_9|LS483477.1_1022945_1025642_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|LS483477.1_1025806_1026106_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|LS483477.1_1026115_1026457_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|LS483477.1_1026811_1028347_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|LS483477.1_1028363_1028966_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|LS483477.1_1028988_1030047_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|LS483477.1_1030056_1030782_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|LS483477.1_1030781_1031486_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|LS483477.1_1031485_1032403_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483477.1_1032405_1032699_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483477.1_1035144_1036191_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483477.1_1036442_1037351_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483477.1_1037360_1038800_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483477.1_1038786_1039392_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483477.1_1039442_1039766_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483477.1_1039956_1040268_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483477.1_1040286_1040997_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483477.1_1040996_1041476_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483477.1_1041472_1042522_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483477.1_1042502_1043264_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900478225.1_47328_C01	LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4	2220997-2222550	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,25,25	25	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|230aa|up_9|LS483477.1_2206696_2207386_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|118aa|up_8|LS483477.1_2207412_2207766_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|422aa|up_7|LS483477.1_2208101_2209367_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_6|LS483477.1_2209367_2210018_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_5|LS483477.1_2210010_2211807_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|466aa|up_4|LS483477.1_2212145_2213543_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|LS483477.1_2213928_2217672_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|LS483477.1_2217668_2219204_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|LS483477.1_2219200_2219911_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|LS483477.1_2219910_2220588_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|LS483477.1_2223290_2224133_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|LS483477.1_2224183_2224642_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|299aa|down_2|LS483477.1_2224761_2225658_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|LS483477.1_2225748_2226762_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|LS483477.1_2226964_2227873_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|LS483477.1_2228004_2228418_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|LS483477.1_2229080_2229698_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|LS483477.1_2229892_2232571_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|LS483477.1_2233047_2233695_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|544aa|down_9|LS483477.1_2234459_2236091_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
