The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1038520	1054105	4624613	tail,transposase,integrase	Salmonella_phage(73.33%)	17	1041165:1041202	1054517:1054554
SQI70384.1|1038520_1038652_+	Uncharacterised protein	NA	A0A1S6L028	Salmonella_phage	97.7	2.2e-14
SQI70387.1|1038910_1039651_-	carbonic anhydrase chloroplast precursor	NA	NA	NA	NA	NA
SQI70390.1|1039879_1040116_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	54.5	4.6e-15
SQI70391.1|1040112_1040490_-|transposase	transposase IS3	transposase	S5WIU1	Leptospira_phage	35.5	1.1e-10
SQI70394.1|1040754_1040940_-|transposase	transposase	transposase	NA	NA	NA	NA
1041165:1041202	attL	GCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
SQI70396.1|1041319_1042345_-|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	99.7	8.3e-202
SQI70398.1|1042348_1042981_-	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
SQI70401.1|1043097_1043337_+	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.7	8.8e-38
SQI70403.1|1043372_1044680_+	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	93.2	3.2e-65
SQI70406.1|1045366_1046524_-	Uncharacterized protein conserved in bacteria	NA	A0A088CPR9	Enterobacteria_phage	28.8	1.5e-29
SQI70408.1|1046896_1047454_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	85.2	8.5e-84
SQI70410.1|1047537_1048710_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.2	7.0e-221
SQI70412.1|1048719_1049235_+|tail	phage major tail tube protein FII	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
SQI70415.1|1049289_1049592_+|tail	phage tail protein E	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
SQI70417.1|1049706_1052526_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.5	0.0e+00
SQI70418.1|1052522_1053008_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	98.1	5.7e-76
SQI70421.1|1053004_1054105_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	95.4	4.2e-191
1054517:1054554	attR	GCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
>prophage 2
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1109393	1163876	4624613	portal,tRNA,tail,terminase,integrase,head	Enterobacteria_phage(33.33%)	61	1095786:1095801	1136408:1136423
1095786:1095801	attL	CGCGCCGCTGAGAAAA	NA	NA	NA	NA
SQI70488.1|1109393_1110431_+|tRNA	tRNA/rRNA methyltransferase YfiF	tRNA	NA	NA	NA	NA
SQI70490.1|1110545_1111235_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
SQI70491.1|1111552_1111936_+	Pyruvate formate-lyase	NA	A0A088FS37	Shigella_phage	71.8	4.7e-33
SQI70493.1|1112051_1113386_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.2e-43
SQI70494.1|1113515_1114253_+|tRNA	tRNA (adenine-N(6)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQI70495.1|1114237_1115860_-	L-aspartate oxidase	NA	NA	NA	NA	NA
SQI70497.1|1116284_1116860_+	RNA polymerase sigma-E factor (sigma-24)	NA	NA	NA	NA	NA
SQI70498.1|1116891_1117542_+	anti-RNA polymerase sigma factor SigE	NA	NA	NA	NA	NA
SQI70500.1|1117541_1118498_+	anti-sigma E factor	NA	NA	NA	NA	NA
SQI70501.1|1118494_1118974_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
SQI70733.1|1119471_1120701_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
SQI70734.1|1120678_1120963_-	excisionase-like protein	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
SQI70735.1|1121003_1121243_-	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
SQI70737.1|1121285_1122395_-	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	100.0	7.1e-207
SQI70738.1|1122405_1125573_-	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	66.9	0.0e+00
SQI70740.1|1125713_1126049_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI70741.1|1126123_1126408_-	DNA breaking-rejoining protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
SQI70743.1|1126838_1127018_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI70744.1|1126962_1127151_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI70745.1|1127461_1127887_-	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
SQI70748.1|1127983_1128238_+	CRO	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
SQI70751.1|1128224_1128719_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQI70753.1|1128765_1129773_+	replication protein	NA	A0A0U2RT81	Escherichia_phage	67.5	1.8e-124
SQI70756.1|1129765_1130227_+	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	74.2	1.7e-66
SQI70759.1|1130239_1130635_+	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	38.8	9.8e-18
SQI70760.1|1130921_1132052_-	Bacteriophytochrome cph2	NA	NA	NA	NA	NA
SQI70761.1|1132448_1134428_+	alkyl/aryl-sulfatase BDS1	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.1e-162
SQI70762.1|1135059_1135365_+	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQI70763.1|1135428_1136031_+	IrsA	NA	A0A0U2RT94	Escherichia_phage	79.9	1.1e-92
SQI70764.1|1136030_1136237_+	Phage protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
SQI70765.1|1136239_1136851_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	97.0	2.7e-91
1136408:1136423	attR	CGCGCCGCTGAGAAAA	NA	NA	NA	NA
SQI70766.1|1136847_1136988_+	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
SQI70767.1|1136984_1137674_+	Gifsy-1 prophage RegQ	NA	I6PDF8	Cronobacter_phage	52.4	1.1e-59
SQI70768.1|1138438_1138828_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	71.8	8.1e-41
SQI70786.1|1138814_1139096_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
SQI70789.1|1139095_1139722_+	Phage endolysin	NA	Q858F0	Salmonella_phage	80.2	4.6e-94
SQI70792.1|1139718_1140255_+	protein gp55	NA	A0A291LBG9	Klebsiella_phage	46.6	1.4e-06
SQI70813.1|1140247_1140469_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI70816.1|1141119_1141665_+|terminase	terminase	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
SQI70817.1|1141636_1143568_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	1.8e-258
SQI70818.1|1143551_1143755_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
SQI70821.1|1143712_1145332_+|portal	phage portal protein, lambda family	portal	K7P6U7	Enterobacteria_phage	62.6	2.9e-188
SQI70823.1|1145321_1145984_+	scaffold protein	NA	A0A0K2FI53	Enterobacteria_phage	61.0	7.8e-68
SQI70825.1|1146041_1146818_+	scaffold protein	NA	O64320	Escherichia_phage	40.5	4.3e-17
SQI70828.1|1146830_1147178_+	Head decoration protein	NA	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
SQI70829.1|1147232_1148261_+|head	head protein	head	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
SQI70832.1|1148318_1148678_+	DNA packaging protein	NA	NA	NA	NA	NA
SQI70834.1|1148688_1149066_+|tail	tail attachment protein	tail	K7PHD8	Enterobacteria_phage	54.7	1.0e-27
SQI70836.1|1149052_1149631_+	Gifsy-1 prophagei VmtZ	NA	A5LH33	Enterobacteria_phage	79.7	1.8e-81
SQI70838.1|1149627_1150029_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
SQI70870.1|1150039_1150783_+|tail	putative tail component of prophage	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
SQI70871.1|1150833_1151229_+|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	55.7	3.3e-29
SQI70872.1|1151249_1151564_+|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	63.8	6.2e-31
SQI70873.1|1151535_1154577_+|tail	tail protein	tail	A0A291AWX1	Escherichia_phage	62.4	6.2e-285
SQI70874.1|1154579_1154909_+|tail	tail protein	tail	A5LH39	Enterobacteria_phage	70.4	2.1e-42
SQI70875.1|1154918_1155617_+|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.2e-103
SQI70876.1|1155623_1156361_+	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	84.6	5.7e-128
SQI70877.1|1156399_1156906_+|tail	tail protein	tail	A5LH42	Enterobacteria_phage	79.8	3.2e-69
SQI70878.1|1156967_1160330_+|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	80.1	0.0e+00
SQI70879.1|1160368_1160611_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI70880.1|1163357_1163876_+|tail	Caudovirales tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	51.4	5.6e-45
>prophage 3
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1630878	1639435	4624613	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
SQI72279.1|1630878_1631826_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	8.1e-10
SQI72280.1|1631809_1632541_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI72281.1|1632521_1632629_-	membrane protein	NA	NA	NA	NA	NA
SQI72282.1|1632688_1633420_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	88.9	1.4e-102
SQI72283.1|1633642_1635328_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	3.8e-276
SQI72284.1|1635324_1636044_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI72285.1|1636090_1636561_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	92.1	3.0e-74
SQI72286.1|1636702_1637161_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	1.2e-54
SQI72287.1|1637401_1639435_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.7e-55
>prophage 4
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1702206	1713721	4624613		Synechococcus_phage(25.0%)	10	NA	NA
SQI72471.1|1702206_1703610_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	31.5	3.4e-20
SQI72472.1|1703761_1704757_+	udp-N-acetylglucosamine 4-epimerase	NA	M4QPK0	Synechococcus_phage	26.9	3.3e-09
SQI72474.1|1705001_1705895_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.0	1.8e-43
SQI72476.1|1706232_1707246_+	UDP-galactose-4-epimerase	NA	A0A2K9L1R4	Tupanvirus	50.2	1.2e-88
SQI72478.1|1707267_1708284_+	glycosyltransferase	NA	NA	NA	NA	NA
SQI72480.1|1708304_1709423_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.2	6.9e-133
SQI72481.1|1709425_1710391_+	GDP-fucose synthetase	NA	D1LW79	Prochlorococcus_phage	50.5	6.0e-85
SQI72483.1|1710393_1710900_+	O-antigen biosynthesis protein	NA	NA	NA	NA	NA
SQI72485.1|1710892_1712341_+	mannose-1-phosphate guanyltransferase	NA	A0A1V0SH58	Hokovirus	32.5	7.2e-58
SQI72486.1|1712344_1713721_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	27.2	2.9e-32
>prophage 5
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1735407	1787753	4624613	transposase,integrase	Salmonella_phage(40.91%)	55	1763880:1763901	1790008:1790029
SQI72522.1|1735407_1736589_+|integrase	phage integrase family protein	integrase	A0A0M4QX09	Salmonella_phage	90.1	2.5e-210
SQI72523.1|1736937_1737177_-	putative bacteriophage protein	NA	H6WRW9	Salmonella_phage	97.5	3.7e-36
SQI72525.1|1737219_1737675_-	gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	95.2	6.6e-58
SQI72527.1|1737921_1738182_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	97.6	9.3e-41
SQI72528.1|1738182_1739373_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	90.7	2.9e-198
SQI72530.1|1739369_1739651_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	92.3	9.7e-44
SQI72532.1|1739619_1740051_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	96.4	1.5e-72
SQI72534.1|1740050_1740899_+	hypothetical prophage protein	NA	A0A0M3ULD8	Salmonella_phage	81.1	2.5e-71
SQI72535.1|1741376_1742456_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72537.1|1743337_1743454_-	virulence protein	NA	K7PKR6	Enterobacteria_phage	94.6	8.0e-13
SQI72539.1|1743523_1743652_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72540.1|1744053_1746330_+	thiosulfate reductase	NA	NA	NA	NA	NA
SQI72542.1|1746344_1746923_+	thiosulfate reductase electron transport protein PhsB	NA	A0A077SL61	Escherichia_phage	37.6	1.5e-22
SQI72564.1|1746919_1747684_+	thiosulfate reductase cytochrome b subunit	NA	NA	NA	NA	NA
SQI72565.1|1747813_1748980_+	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	87.1	1.3e-198
SQI72566.1|1749125_1749593_+	DNA gyrase inhibitor	NA	NA	NA	NA	NA
SQI72567.1|1749711_1750770_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI72568.1|1751014_1751350_+	UPF0265 protein YeeX	NA	NA	NA	NA	NA
SQI72569.1|1751425_1751686_-	propanediol utilization	NA	NA	NA	NA	NA
SQI72570.1|1752046_1752388_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQI72571.1|1752433_1753441_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQI72572.1|1753463_1753589_+	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
SQI72577.1|1753644_1754574_+	L,D-transpeptidase	NA	NA	NA	NA	NA
SQI72578.1|1755279_1758180_+	Rhs family protein	NA	NA	NA	NA	NA
SQI72579.1|1759595_1759718_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI72580.1|1760626_1761178_-|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	39.7	7.8e-21
SQI72581.1|1761213_1761834_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.1	3.0e-29
SQI72582.1|1762198_1763629_-	putative inner membrane protein	NA	NA	NA	NA	NA
1763880:1763901	attL	ATCCAGTCAGAGGAGCCAAATT	NA	NA	NA	NA
SQI72583.1|1764061_1764679_+|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.6	2.3e-29
1763880:1763901	attL	ATCCAGTCAGAGGAGCCAAATT	NA	NA	NA	NA
SQI72584.1|1764764_1765319_+|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	41.8	8.1e-26
SQI72585.1|1765379_1765469_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72586.1|1766112_1766574_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72587.1|1766570_1766693_+	transcriptional regulator	NA	NA	NA	NA	NA
SQI72588.1|1766974_1767529_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72589.1|1767703_1768603_+|integrase	integrase	integrase	NA	NA	NA	NA
SQI72590.1|1768820_1769450_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72591.1|1769684_1769975_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72592.1|1770640_1771318_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	39.5	1.9e-29
1770463:1770484	attR	ATCCAGTCAGAGGAGCCAAATT	NA	NA	NA	NA
SQI72593.1|1772168_1772375_-	Uncharacterised protein	NA	NA	NA	NA	NA
1770463:1770484	attR	ATCCAGTCAGAGGAGCCAAATT	NA	NA	NA	NA
SQI72594.1|1772867_1774334_+	peptidase family C69	NA	NA	NA	NA	NA
SQI72595.1|1775439_1775643_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72596.1|1775655_1776345_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72597.1|1777255_1778479_+	integral membrane transport protein	NA	S4TR35	Salmonella_phage	24.3	6.1e-26
SQI72598.1|1778471_1779413_+	oxaloacetate decarboxylase alpha subunit	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.0	1.3e-20
SQI72599.1|1779409_1780126_+	Alpha/beta hydrolase family	NA	NA	NA	NA	NA
SQI72600.1|1780122_1782285_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQI72601.1|1782292_1782961_+	4-hydroxy-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
SQI72616.1|1782957_1783851_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI72621.1|1783816_1784710_-	putative transcription regulator protein	NA	NA	NA	NA	NA
SQI72625.1|1784872_1785184_-|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	47.6	6.3e-12
SQI72629.1|1785188_1785425_-|integrase	bacteriophage integrase	integrase	Q7M297	Enterobacteria_phage	36.5	3.6e-07
SQI72633.1|1785510_1786098_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.1	1.3e-29
SQI72638.1|1786698_1786935_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI72641.1|1786931_1787444_-|transposase	transposase IS3	transposase	S5WIU1	Leptospira_phage	34.0	5.2e-11
SQI72643.1|1787567_1787753_-|transposase	transposase	transposase	NA	NA	NA	NA
1790008:1790029	attR	GAATTTGGCTCCTCTGACTGGA	NA	NA	NA	NA
>prophage 6
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	1868577	1920148	4624613	tail,transposase,integrase,tRNA	Phage_Gifsy-2(20.0%)	48	1895241:1895256	1922620:1922635
SQI73172.1|1868577_1870311_-|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.4	4.9e-85
SQI73173.1|1870547_1871135_+	Protein yecM	NA	NA	NA	NA	NA
SQI73174.1|1871137_1871884_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
SQI73175.1|1872114_1873086_-|tRNA	tRNA (5-methoxyuridine) 34 synthase	tRNA	NA	NA	NA	NA
SQI73176.1|1873082_1873826_-|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA	F5B419	Synechococcus_phage	30.4	9.2e-25
SQI73177.1|1873865_1874261_-	membrane protein	NA	NA	NA	NA	NA
SQI73180.1|1874508_1875327_-	Protein of uncharacterised function DUF72	NA	Q859D1	Escherichia_coli_phage	79.5	3.4e-57
SQI73182.1|1875323_1875890_-	putative isochorismatase hydrolase	NA	NA	NA	NA	NA
SQI73213.1|1876214_1877987_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQI73216.1|1878088_1878541_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQI73238.1|1878570_1879311_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
SQI73241.1|1879347_1879869_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	4.5e-10
SQI73243.1|1879950_1880562_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
SQI73245.1|1880570_1881581_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	25.9	2.4e-07
SQI73246.1|1881632_1882418_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
SQI73247.1|1882414_1883170_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	3.2e-17
SQI73248.1|1883233_1884193_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
SQI73249.1|1884208_1885528_+	Cell wall endopeptidase family M23/M37	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
SQI73250.1|1885644_1886616_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
SQI73252.1|1886687_1888130_-	pyruvate kinase A	NA	NA	NA	NA	NA
SQI73254.1|1888253_1889123_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQI73255.1|1889464_1890940_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
SQI73262.1|1891174_1892986_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQI73265.1|1893023_1893665_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQI73266.1|1893763_1894942_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SQI73267.1|1895073_1895364_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
1895241:1895256	attL	GTTGTCGCTGTGGCTG	NA	NA	NA	NA
SQI73268.1|1895431_1895785_+	protein YebF	NA	NA	NA	NA	NA
SQI73269.1|1895878_1896538_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQI73270.1|1896750_1898802_+	oligopeptidase	NA	NA	NA	NA	NA
SQI73271.1|1898837_1899536_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	41.6	4.3e-08
SQI73272.1|1899559_1900216_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQI73273.1|1900322_1900553_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQI73274.1|1900690_1901065_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQI73275.1|1901065_1901941_+	membrane protein	NA	NA	NA	NA	NA
SQI73276.1|1901957_1902308_+	Putative periplasmic or exported protein	NA	NA	NA	NA	NA
SQI73277.1|1902674_1903076_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	49.2	4.0e-27
SQI73278.1|1903344_1904061_+	type III secretion system effector protein	NA	B6DZB9	Enterobacteria_phage	48.4	1.5e-19
SQI73279.1|1904219_1904504_-	Uncharacterized HTH-type transcriptional regulator YddM	NA	A0A2L1IV52	Escherichia_phage	54.5	4.7e-22
SQI73280.1|1904503_1904782_-	Plasmid maintenance system killer protein	NA	A0A2L1IV28	Escherichia_phage	55.4	1.8e-26
SQI73281.1|1905364_1906048_-	virulence protein	NA	Q9MBM0	Phage_Gifsy-2	71.4	3.1e-88
SQI73282.1|1906472_1907303_+|tail	Phage tail fiber	tail	Q8HAB4	Salmonella_phage	48.8	1.3e-35
SQI73283.1|1907305_1907740_+|tail	Phage tail fiber	tail	A0A1S6KZZ1	Salmonella_phage	69.9	1.1e-43
SQI73284.1|1907993_1910300_+	leucine-rich repeat protein	NA	Q9MBL9	Phage_Gifsy-2	46.5	1.3e-24
SQI73288.1|1912077_1914189_+	SspH1	NA	Q9MBL9	Phage_Gifsy-2	46.5	6.2e-26
SQI73308.1|1914850_1915039_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI73309.1|1915153_1915642_-|transposase	transposase-like protein	transposase	NA	NA	NA	NA
SQI73310.1|1916870_1918997_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	69.9	5.3e-57
SQI73311.1|1919176_1920148_-|integrase	integrase	integrase	NA	NA	NA	NA
1922620:1922635	attR	CAGCCACAGCGACAAC	NA	NA	NA	NA
>prophage 7
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	2841490	2883621	4624613	protease,holin,tRNA,tail,terminase,head	Salmonella_phage(94.0%)	53	NA	NA
SQI76926.1|2841490_2843020_-|tail	Gifsy-2 prophage tail fiber protein	tail	A0A1B0VFW4	Salmonella_phage	86.6	4.0e-83
SQI76929.1|2843019_2843700_-	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	1.1e-128
SQI76932.1|2843696_2844896_-	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.7	1.0e-214
SQI76935.1|2844896_2845250_-	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	96.6	2.3e-58
SQI76939.1|2845249_2846002_-	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	71.7	1.2e-93
SQI76943.1|2846437_2847211_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI76944.1|2847352_2847700_-	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	69.2	1.2e-22
SQI76946.1|2847696_2848770_-	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	92.4	2.0e-185
SQI76949.1|2848772_2849075_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	99.0	2.7e-52
SQI76952.1|2849074_2849650_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	99.5	7.0e-97
SQI76955.1|2849649_2851659_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	99.3	0.0e+00
SQI76960.1|2851836_2852289_-	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	100.0	5.1e-79
SQI76964.1|2852292_2852733_-	bacteriophage protein	NA	A0A0M5M1K6	Salmonella_phage	99.3	2.7e-77
SQI76966.1|2852743_2853895_-	hypothetical prophage protein	NA	A0A0M4RD26	Salmonella_phage	100.0	2.5e-215
SQI76969.1|2853897_2854464_-	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	98.9	5.2e-105
SQI76972.1|2854438_2854828_-	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	99.2	7.1e-69
SQI76974.1|2854814_2855369_-	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
SQI76978.1|2855365_2855785_-	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	100.0	3.9e-73
SQI76982.1|2855738_2856107_-	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
SQI76987.1|2856148_2857090_-	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
SQI76988.1|2857101_2857599_-	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	98.8	3.3e-87
SQI76989.1|2857603_2858836_-|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
SQI76993.1|2858850_2859459_-	putative bacteriophage protein	NA	A0A0M4REK0	Salmonella_phage	99.5	1.4e-111
SQI76995.1|2859475_2860942_-	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	99.6	8.9e-282
SQI76999.1|2860941_2862564_-	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	99.3	0.0e+00
SQI77000.1|2862566_2863196_-|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	99.5	2.1e-110
SQI77004.1|2863716_2864184_-	putative endopeptidase	NA	A0A0M4RD57	Salmonella_phage	91.5	9.1e-71
SQI77007.1|2864180_2864630_-	Lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	1.3e-79
SQI77010.1|2864616_2864967_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	79.8	7.6e-46
SQI77014.1|2865365_2866163_-	molecular chaperone	NA	A0A0M4S661	Salmonella_phage	99.2	6.8e-151
SQI77018.1|2866295_2866907_-	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
SQI77022.1|2866909_2867116_-	Phage protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
SQI77025.1|2867115_2867718_-	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
SQI77029.1|2868051_2868291_-	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
SQI77032.1|2868445_2868712_-	bacteriophage protein	NA	S4TNF2	Salmonella_phage	98.9	4.4e-46
SQI77034.1|2868810_2869620_-	Eaa protein	NA	S4TSR6	Salmonella_phage	99.6	1.3e-157
SQI77036.1|2869616_2870069_-	conserved hypothetical bacteriophage protein	NA	S4TNP2	Salmonella_phage	100.0	3.8e-74
SQI77041.1|2870065_2870467_-	Uncharacterised protein	NA	S4TTI6	Salmonella_phage	100.0	2.9e-73
SQI77049.1|2870463_2870811_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	98.3	1.5e-57
SQI77122.1|2870821_2871571_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
SQI77124.1|2871573_2872377_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	83.1	8.7e-37
SQI77126.1|2872404_2872620_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77128.1|2872914_2873235_-	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
SQI77130.1|2873250_2873472_-	phage regulatory protein	NA	H6WRX5	Salmonella_phage	68.1	5.3e-21
SQI77132.1|2873594_2873993_+	DNA-binding protein	NA	H6WRX4	Salmonella_phage	68.2	1.8e-43
SQI77138.1|2874400_2874559_+	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	98.1	9.9e-22
SQI77139.1|2874699_2877627_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	95.3	0.0e+00
SQI77140.1|2877637_2878747_+	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	99.5	1.0e-205
SQI77141.1|2878789_2879029_+	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
SQI77143.1|2879069_2879318_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
SQI77144.1|2879362_2880655_+	Integrase	NA	S4TSP2	Salmonella_phage	100.0	3.4e-253
SQI77145.1|2880849_2882052_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQI77147.1|2882220_2883621_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	35.7	1.0e-80
>prophage 8
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	2925258	2980323	4624613	portal,transposase,protease,tRNA	Escherichia_phage(21.05%)	49	NA	NA
SQI77280.1|2925258_2925663_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI77285.1|2925899_2927048_-	transport protein	NA	NA	NA	NA	NA
SQI77287.1|2927359_2927986_+	Nicotinamidase family protein YcaC	NA	NA	NA	NA	NA
SQI77288.1|2928040_2928904_-	anaerobic dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA	NA
SQI77289.1|2928905_2929523_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	58.6	8.0e-75
SQI77299.1|2929533_2931978_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.5	5.4e-223
SQI77304.1|2932213_2933506_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	5.0e-95
SQI77305.1|2933763_2935107_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	41.5	2.8e-80
SQI77306.1|2935116_2935728_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQI77310.1|2935870_2939731_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.8e-88
SQI77312.1|2939865_2940360_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SQI77315.1|2940907_2941876_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	45.2	1.1e-62
SQI77317.1|2941990_2943757_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	NA	W8CYL7	Bacillus_phage	25.1	7.8e-22
SQI77319.1|2943757_2945479_+	transport ATP-binding protein CydC	NA	W8CYL7	Bacillus_phage	23.9	3.4e-14
SQI77321.1|2945523_2946228_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
SQI77331.1|2946539_2946758_+	initiation factor IF-1	NA	NA	NA	NA	NA
SQI77335.1|2946847_2947759_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI77343.1|2947867_2948728_+	pirin-like protein	NA	NA	NA	NA	NA
SQI77346.1|2948747_2949425_+	Isochorismatase family protein	NA	NA	NA	NA	NA
SQI77348.1|2949851_2952128_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.1	3.7e-165
SQI77352.1|2952158_2952479_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
SQI77355.1|2952802_2953024_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQI77357.1|2953162_2955109_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	41.9	1.2e-39
SQI77360.1|2955105_2956224_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
SQI77363.1|2956369_2957320_+	virK protein	NA	NA	NA	NA	NA
SQI77366.1|2957316_2958975_-	putative ATP-dependent endonuclease of the OLDfamily YbjD subgroup	NA	NA	NA	NA	NA
SQI77369.1|2959175_2960075_+	Surface protein	NA	NA	NA	NA	NA
SQI77370.1|2960218_2961871_+	Hydroxylamine reductase	NA	NA	NA	NA	NA
SQI77371.1|2961882_2962851_+	oxidoreductase	NA	NA	NA	NA	NA
SQI77372.1|2962977_2964696_+	pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	8.3e-29
SQI77378.1|2964734_2965736_+	L-allo-threonine aldolase	NA	NA	NA	NA	NA
SQI77391.1|2965746_2967180_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
SQI77393.1|2967275_2968289_+	oxidoreductase	NA	NA	NA	NA	NA
SQI77394.1|2968285_2969116_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	29.9	7.4e-07
SQI77395.1|2969112_2969436_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQI77396.1|2969828_2969987_+	virulence protein MsgA	NA	K7PKR6	Enterobacteria_phage	76.5	1.5e-14
SQI77397.1|2970484_2970619_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77398.1|2970770_2970950_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77400.1|2971933_2972830_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
SQI77403.1|2973129_2973318_-|portal	phage portal protein, lambda family protein	portal	NA	NA	NA	NA
SQI77406.1|2973373_2973550_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77409.1|2973536_2973773_-	exported phage protein	NA	NA	NA	NA	NA
SQI77412.1|2973769_2974276_-	Phage endolysin	NA	T1SBJ3	Salmonella_phage	79.6	4.3e-74
SQI77415.1|2975729_2976119_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77418.1|2977566_2977911_-	virulence factor	NA	A0A077SLN2	Escherichia_phage	93.0	4.5e-59
SQI77420.1|2977977_2978076_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI77421.1|2978172_2978721_-	virulence protein VsdF	NA	A0A077SLN2	Escherichia_phage	77.0	5.8e-77
SQI77422.1|2978964_2979114_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQI77423.1|2979306_2980323_-|transposase	transposase IS116	transposase	NA	NA	NA	NA
>prophage 9
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	3346821	3403280	4624613	transposase,protease,tRNA	Bacillus_phage(27.27%)	51	NA	NA
SQI78784.1|3346821_3347739_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI78786.1|3347735_3348188_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI78788.1|3348188_3348605_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI78790.1|3348714_3351216_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	1.5e-111
SQI78792.1|3352350_3352830_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI78794.1|3352934_3354587_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI78796.1|3354759_3355980_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI78798.1|3356194_3357871_+	transport protein	NA	NA	NA	NA	NA
SQI78800.1|3357993_3359298_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI78802.1|3359450_3360422_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	8.6e-15
SQI78804.1|3360418_3361381_-	ferrochelatase	NA	NA	NA	NA	NA
SQI78805.1|3361546_3362191_-	adenylate kinase	NA	NA	NA	NA	NA
SQI78807.1|3362429_3364304_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.3	4.9e-115
SQI78809.1|3364414_3365020_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI78811.1|3365019_3365349_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI78812.1|3367436_3367988_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	2.3e-28
SQI78814.1|3368140_3368518_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI78816.1|3368598_3369114_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI78818.1|3369127_3369295_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI78820.1|3369364_3369958_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	55.4	5.9e-51
SQI78821.1|3369968_3370241_+|transposase	Putative transposase	transposase	NA	NA	NA	NA
SQI78822.1|3370206_3373569_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI78823.1|3373687_3374341_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI78824.1|3374482_3375676_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI78825.1|3375698_3378848_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI78826.1|3379345_3379720_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI78827.1|3379747_3379966_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI78828.1|3380145_3380313_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI78829.1|3380406_3380697_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI78830.1|3380813_3381284_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI78831.1|3381484_3381745_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI78832.1|3381763_3381862_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI78835.1|3381969_3383520_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI78837.1|3383828_3384140_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI78857.1|3384172_3384742_-	lipoprotein	NA	NA	NA	NA	NA
SQI78861.1|3384956_3385817_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI78866.1|3385923_3387210_-	ammonium transporter	NA	NA	NA	NA	NA
SQI78868.1|3387241_3387580_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI78874.1|3387791_3389573_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.9	1.2e-38
SQI78877.1|3389565_3391338_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.4	1.2e-49
SQI78883.1|3391378_3391837_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI78888.1|3391949_3393005_+	lyase	NA	NA	NA	NA	NA
SQI78893.1|3393120_3393579_-|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	5.9e-14
SQI78896.1|3393766_3394585_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI78899.1|3394685_3396386_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI78907.1|3396450_3397146_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.3e-86
SQI78930.1|3397254_3397653_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI78941.1|3397758_3398133_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI78944.1|3398282_3400154_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI78947.1|3400444_3400717_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.1e-20
SQI78954.1|3400925_3403280_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
>prophage 10
LS483478	Salmonella enterica subsp. houtenae serovar Houten strain NCTC10401 genome assembly, chromosome: 1	4624613	3948539	3963405	4624613	capsid,integrase	Enterobacteria_phage(45.45%)	16	3945015:3945029	3953359:3953373
3945015:3945029	attL	CCGCATCCCCGCCGG	NA	NA	NA	NA
SQI80777.1|3948539_3949796_-|integrase	phage integrase family site-specific recombinase	integrase	B7SYF8	Stenotrophomonas_phage	43.4	2.8e-82
SQI80780.1|3950491_3950833_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI80783.1|3950840_3951245_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI80787.1|3951256_3952633_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI80791.1|3952732_3955066_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
3953359:3953373	attR	CCGCATCCCCGCCGG	NA	NA	NA	NA
SQI80795.1|3955080_3955401_-	putative prophage protein	NA	NA	NA	NA	NA
SQI80799.1|3955397_3955625_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI80801.1|3956166_3956433_-	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
SQI80804.1|3956972_3957710_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	65.3	2.4e-81
SQI80807.1|3957706_3957952_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
SQI80810.1|3957968_3958535_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	60.5	2.5e-54
SQI80814.1|3958754_3959318_-	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	4.2e-30
SQI80817.1|3959606_3960602_+	DNA methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	5.9e-19
SQI80821.1|3960655_3961240_-	Integrase	NA	B7SYF8	Stenotrophomonas_phage	46.9	4.2e-33
SQI80825.1|3961239_3961917_-	Integrase	NA	E5AGD0	Erwinia_phage	38.3	4.9e-25
SQI80828.1|3962385_3963405_+	zinc-type alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	31.0	3.2e-44
