The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	1647477	1656649	4627083	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQI83512.1|1647477_1648425_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
SQI83513.1|1648408_1649140_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI83514.1|1649120_1649228_-	membrane protein	NA	NA	NA	NA	NA
SQI83515.1|1649287_1650019_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI83516.1|1650241_1651927_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQI83517.1|1651923_1652643_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI83518.1|1652689_1653157_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQI83519.1|1653213_1653744_-	lipoprotein	NA	NA	NA	NA	NA
SQI83520.1|1653915_1654374_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
SQI83521.1|1654615_1656649_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	1723878	1734385	4627083		Enterobacteria_phage(37.5%)	10	NA	NA
SQI83580.1|1723878_1725282_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
SQI83581.1|1725459_1726353_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
SQI83582.1|1726729_1727815_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	9.4e-103
SQI83583.1|1727814_1728714_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
SQI83584.1|1728761_1729640_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.2	3.5e-108
SQI83585.1|1729643_1730192_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.9e-52
SQI83586.1|1730197_1731172_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
SQI83587.1|1731187_1731961_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
SQI83588.1|1731965_1733045_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
SQI83589.1|1733071_1734385_+	lipopolysaccharide biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	1912515	1968071	4627083	terminase,integrase,transposase,tRNA,protease	Enterobacteria_phage(23.53%)	59	1918901:1918915	1943030:1943044
SQI83900.1|1912515_1914288_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQI83901.1|1914390_1914843_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQI83902.1|1914872_1915613_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
SQI83903.1|1915649_1916171_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
SQI83904.1|1916172_1916772_-	protein yebB	NA	NA	NA	NA	NA
SQI83905.1|1916980_1917673_+	membrane protein	NA	NA	NA	NA	NA
SQI83906.1|1918031_1918643_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA	NA
SQI83907.1|1918651_1919662_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	26.4	2.4e-07
1918901:1918915	attL	CGCACCACGTCCGGC	NA	NA	NA	NA
SQI83908.1|1919740_1920526_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
SQI83909.1|1920522_1921278_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
SQI83910.1|1921299_1922301_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
SQI83911.1|1922316_1923636_+	Cell wall endopeptidase family M23/M37	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
SQI83912.1|1923752_1924724_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
SQI83913.1|1924796_1926239_-	pyruvate kinase A	NA	NA	NA	NA	NA
SQI83914.1|1926362_1927232_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQI83915.1|1927573_1929049_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
SQI83916.1|1929283_1931095_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQI83917.1|1931132_1931774_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQI83918.1|1931873_1933052_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SQI83919.1|1933182_1933473_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
SQI83920.1|1933540_1933894_+	protein YebF	NA	NA	NA	NA	NA
SQI83921.1|1933987_1934647_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQI83945.1|1934859_1936911_+	oligopeptidase	NA	NA	NA	NA	NA
SQI83946.1|1936947_1937646_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
SQI83947.1|1937669_1938326_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQI83948.1|1938433_1938664_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQI83949.1|1938801_1939176_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQI83950.1|1939176_1940052_+	membrane protein	NA	NA	NA	NA	NA
SQI83951.1|1940068_1940422_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQI83952.1|1940796_1941876_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.9	1.3e-101
SQI83953.1|1941872_1943144_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	66.7	3.8e-55
1943030:1943044	attR	CGCACCACGTCCGGC	NA	NA	NA	NA
SQI83954.1|1943515_1943770_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83955.1|1944082_1944250_-	lytic enzyme	NA	NA	NA	NA	NA
SQI83956.1|1944552_1945044_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	56.2	1.9e-42
SQI83957.1|1945030_1945210_+|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	53.2	2.7e-07
SQI83958.1|1945229_1945604_+|terminase	phage terminase large subunit	terminase	Q8VNN7	Enterobacteria_phage	82.9	1.3e-59
SQI83959.1|1947734_1947893_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83960.1|1948493_1948616_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83961.1|1949064_1949679_-	disulfide bond formation protein	NA	NA	NA	NA	NA
SQI83962.1|1949688_1949847_-	membrane protein	NA	NA	NA	NA	NA
SQI83963.1|1949979_1950894_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
SQI83964.1|1951685_1952210_-	fimbriae usher protein	NA	NA	NA	NA	NA
SQI83965.1|1952226_1952394_+	error-prone repair: component of DNA polymerase V with UmuD'	NA	I6RSM4	Salmonella_phage	90.0	4.3e-07
SQI83966.1|1952332_1952899_+|transposase	transposase, Mutator family	transposase	A0A218MNI5	uncultured_virus	45.6	9.4e-38
SQI83967.1|1953709_1953910_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83982.1|1954038_1954458_+	acetyltransferase	NA	NA	NA	NA	NA
SQI83984.1|1954586_1955099_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83986.1|1955391_1955787_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
SQI83988.1|1956470_1957193_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQI83990.1|1957477_1957642_+	membrane protein	NA	NA	NA	NA	NA
SQI84002.1|1957632_1958517_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.5e-58
SQI84003.1|1958535_1958727_-	putative secreted protein	NA	NA	NA	NA	NA
SQI84004.1|1958837_1959077_-	conserved domain protein	NA	NA	NA	NA	NA
SQI84005.1|1959190_1960732_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQI84006.1|1960707_1963341_-	mce-related protein	NA	NA	NA	NA	NA
SQI84007.1|1963309_1964593_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQI84008.1|1964649_1965219_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQI84009.1|1965316_1966003_+	ProP effector	NA	NA	NA	NA	NA
SQI84010.1|1966022_1968071_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	1.0e-86
>prophage 4
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	2596268	2632534	4627083	terminase,integrase,lysis,transposase,holin,tail	Edwardsiella_phage(22.22%)	41	2584408:2584422	2626551:2626565
2584408:2584422	attL	ACTTTTTCTGCCAGT	NA	NA	NA	NA
SQI87633.1|2596268_2596508_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
SQI87635.1|2596718_2596883_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI87637.1|2597380_2598190_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
SQI87639.1|2598262_2598640_+	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
SQI87641.1|2598787_2599330_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
SQI87642.1|2599522_2600251_-	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
SQI87644.1|2600267_2600681_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	4.2e-19
SQI87646.1|2601727_2602852_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI87648.1|2603297_2603510_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.5e-20
SQI87668.1|2603763_2604435_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	1.1e-80
SQI87670.1|2604754_2606866_-	SspH1	NA	Q9MBL9	Phage_Gifsy-2	46.9	2.1e-26
SQI87671.1|2607037_2607811_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	87.5	2.6e-131
SQI87672.1|2607764_2608067_-	regulator	NA	A0A077SLK2	Escherichia_phage	81.5	1.2e-39
SQI87673.1|2609975_2611430_-|tail	side tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	74.3	7.0e-45
SQI87674.1|2611419_2612022_-	Protein of uncharacterised function (DUF2612)	NA	A0A2R3UAM9	Myoviridae_environmental_samples	38.9	3.3e-33
SQI87698.1|2612023_2613265_-	bacteriophage protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	9.1e-102
SQI87701.1|2613261_2613618_-	Uncharacterised protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	9.5e-20
SQI87703.1|2613630_2614308_-	bacteriophage protein	NA	A0A077KAY0	Edwardsiella_phage	36.4	2.4e-32
SQI87705.1|2614288_2615158_-	Uncharacterised protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
SQI87706.1|2615154_2615457_-	Uncharacterised protein	NA	A0A077K9U4	Edwardsiella_phage	48.5	2.7e-23
SQI87707.1|2615456_2616167_-	Uncharacterised protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	6.5e-28
SQI87708.1|2616163_2618335_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
SQI87709.1|2618542_2618947_-	Uncharacterised protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
SQI87710.1|2618946_2619393_-	Uncharacterised protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
SQI87711.1|2619393_2620878_-	Protein of uncharacterised function (DUF3383)	NA	A0A077KGV4	Edwardsiella_phage	41.0	3.1e-96
SQI87712.1|2620858_2621404_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87713.1|2621388_2621754_-	Uncharacterised protein	NA	A0A077KAW7	Edwardsiella_phage	40.5	3.0e-21
SQI87714.1|2621750_2622335_-	Mu-like prophage protein gpG	NA	H9C0W2	Aeromonas_phage	29.8	6.1e-16
SQI87715.1|2622328_2622775_-	Uncharacterised protein	NA	A0A068CGG9	Acinetobacter_phage	40.6	1.8e-15
SQI87716.1|2622781_2623129_-	Uncharacterised protein	NA	H9C0V9	Aeromonas_phage	40.2	3.9e-10
SQI87717.1|2623132_2624161_-	Uncharacterised protein	NA	A0A219YBB0	Aeromonas_phage	48.4	8.7e-82
SQI87718.1|2624160_2624643_-	Uncharacterised protein	NA	K4HYQ5	Acinetobacter_phage	41.2	5.8e-20
SQI87719.1|2624644_2625991_-	Uncharacterized protein conserved in bacteria	NA	A0A219YCD3	Aeromonas_phage	36.5	1.1e-68
SQI87720.1|2625987_2626677_-	putative bacteriophage protein	NA	H9C0V1	Aeromonas_phage	48.7	1.0e-57
2626551:2626565	attR	ACTTTTTCTGCCAGT	NA	NA	NA	NA
SQI87721.1|2626717_2628238_-	Phage-associated protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.7	6.3e-105
SQI87722.1|2628237_2629857_-	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	81.4	1.5e-261
SQI87723.1|2629859_2630489_-|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	97.1	1.1e-106
SQI87724.1|2630932_2631400_-|lysis	bacteriophage lysis protein	lysis	H6WRZ5	Salmonella_phage	76.8	1.6e-59
SQI87725.1|2631401_2631500_-	Phage protein	NA	NA	NA	NA	NA
SQI87726.1|2631708_2632248_-	Phage endolysin R	NA	S5MQK2	Escherichia_phage	74.1	5.7e-77
SQI87727.1|2632225_2632534_-|holin	phage-holin analog protein	holin	NA	NA	NA	NA
>prophage 5
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	2635645	2651235	4627083		Salmonella_phage(29.41%)	22	NA	NA
SQI87729.1|2635645_2636008_-	phage antiterminator	NA	Q777W5	Enterobacteria_phage	80.0	1.7e-53
SQI87730.1|2636017_2636326_-	Protein of uncharacterised function (DUF1364)	NA	K7P7Q1	Enterobacteria_phage	79.3	4.8e-36
SQI87731.1|2636497_2637097_-	IrsA	NA	A0A0U2RT94	Escherichia_phage	84.9	9.1e-100
SQI87732.1|2637160_2637505_-	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQI87733.1|2638018_2638291_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87734.1|2638287_2638683_-	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	37.0	3.7e-17
SQI87735.1|2638694_2639156_-	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	73.9	3.2e-68
SQI87736.1|2639148_2640156_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	68.7	5.6e-126
SQI87737.1|2640202_2640697_-	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQI87738.1|2640683_2640938_-	CRO	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
SQI87739.1|2641102_2641435_+	putative regulator	NA	A0A0M4R5D1	Salmonella_phage	32.7	5.6e-06
SQI87740.1|2641730_2641886_+	Protein of uncharacterised function (DUF1391)	NA	M4QQ57	Salicola_phage	55.3	8.0e-08
SQI87741.1|2642267_2642552_+	DNA breaking-rejoining protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
SQI87742.1|2642626_2642962_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI87743.1|2643102_2646117_+	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	47.2	3.5e-224
SQI87744.1|2646129_2647224_+	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	50.9	2.9e-91
SQI87745.1|2647259_2647580_+	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	59.2	1.8e-33
SQI87746.1|2647572_2647905_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
SQI87747.1|2647901_2648453_+	Eaa protein	NA	A0A192Y7X3	Salmonella_phage	34.5	2.8e-10
SQI87748.1|2648502_2648739_+	excisionase	NA	NA	NA	NA	NA
SQI87749.1|2648728_2649871_+	Integrase	NA	O21929	Phage_21	79.4	2.2e-171
SQI87750.1|2649984_2651235_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
>prophage 6
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	3246773	3281695	4627083	coat,integrase,capsid,head,holin,portal,tail	Salmonella_phage(38.3%)	50	3238545:3238561	3287098:3287114
3238545:3238561	attL	CGCATAGCCCCGCCAGT	NA	NA	NA	NA
SQI91248.1|3246773_3248996_-|tail	Bifunctional tail protein	tail	A0A1W5PUZ2	Salmonella_phage	71.1	6.5e-292
SQI91250.1|3249151_3251083_-	DNA tranfer protein	NA	I1TEJ6	Salmonella_phage	95.5	0.0e+00
SQI91251.1|3251082_3252453_-	DNA transfer protein	NA	A0A1R3Y5Q4	Salmonella_virus	98.0	2.8e-245
SQI91253.1|3252462_3253152_-	DNA transfer protein gp7	NA	B9UDK9	Salmonella_phage	93.4	6.6e-94
SQI91255.1|3253154_3253610_-|capsid	Phage capsid and scaffold protein	capsid	I6R0L6	Salmonella_phage	99.3	8.8e-87
SQI91257.1|3253609_3254311_-|head	head completion protein	head	A0A192Y6T9	Salmonella_phage	95.7	2.0e-74
SQI91259.1|3254314_3255733_-	DNA stabilization protein	NA	A0A2D1GM00	Escherichia_phage	98.7	3.9e-274
SQI91261.1|3255741_3256224_-	DNA stabilization protein	NA	Q9AYZ5	Salmonella_phage	99.4	4.2e-87
SQI91263.1|3256198_3256384_-	Uncharacterised protein	NA	Q716G9	Shigella_phage	100.0	2.7e-26
SQI91265.1|3256426_3257698_-|coat	P22 coat protein - gene protein 5	coat	Q9AYZ7	Salmonella_phage	95.7	1.8e-230
SQI91267.1|3257709_3258594_-	DNA repair ATPase	NA	Q716H1	Shigella_phage	99.3	4.4e-143
SQI91269.1|3258607_3260698_-|portal	portal protein p19	portal	Q9AYZ9	Salmonella_phage	99.3	0.0e+00
SQI91271.1|3260736_3262149_-	Terminase large subunit	NA	Q716H3	Shigella_phage	99.1	4.1e-276
SQI91273.1|3262145_3262586_-	LF82 chromosome	NA	C7U0W1	Enterobacteria_phage	100.0	3.5e-80
SQI91275.1|3262588_3262831_-	Orf80	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
SQI91277.1|3263054_3263585_-	phage protein	NA	A0A2H4FQV0	Salmonella_phage	96.0	1.5e-90
SQI91279.1|3263797_3264265_-	gp15	NA	A0A291AWW3	Escherichia_phage	94.8	2.3e-74
SQI91281.1|3264261_3264738_-	lysin	NA	A5VW81	Enterobacteria_phage	100.0	7.5e-89
SQI91283.1|3264721_3265045_-|holin	holin-like protein	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
SQI91284.1|3265544_3266063_-	gp23-like protein	NA	A0A192Y911	Salmonella_phage	98.8	7.7e-95
SQI91286.1|3266053_3266725_-	Serine/threonine-protein phosphatase	NA	Q716B9	Shigella_phage	98.2	2.3e-131
SQI91288.1|3266702_3266909_-	protein ninH	NA	Q716C0	Shigella_phage	100.0	7.3e-33
SQI91290.1|3266905_3267511_-	Phage NinG rap recombination	NA	G9L693	Escherichia_phage	95.0	2.9e-93
SQI91292.1|3267511_3267730_-	Uncharacterised protein	NA	Q5G8S1	Enterobacteria_phage	98.6	7.0e-34
SQI91295.1|3267710_3267893_-	NinF family protein	NA	Q5G8S2	Enterobacteria_phage	96.7	1.3e-28
SQI91296.1|3267889_3268066_-	protein ninE	NA	Q5G8S3	Enterobacteria_phage	75.9	7.4e-18
SQI91298.1|3268062_3268281_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91300.1|3268277_3268826_-	DNA adenine methylase	NA	E5AGF8	Erwinia_phage	63.1	2.3e-65
SQI91301.1|3268822_3269263_-	ninB protein	NA	K7PKW7	Enterobacterial_phage	98.6	1.0e-79
SQI91303.1|3269336_3269615_-	gp62	NA	Q5G8S7	Enterobacteria_phage	96.6	8.7e-45
SQI91305.1|3269611_3270988_-	DNA helicase	NA	A0A075B8G2	Enterobacteria_phage	100.0	3.3e-254
SQI91306.1|3270984_3271800_-	Replication protein O	NA	A0A075B8J2	Enterobacteria_phage	100.0	9.4e-148
SQI91308.1|3271792_3271939_-	Protein of uncharacterised function (DUF2740)	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
SQI91310.1|3271973_3272252_-	cII	NA	Q5G8T2	Enterobacteria_phage	100.0	2.5e-44
SQI91312.1|3272358_3272544_-	regulatory protein cro (Antirepressor)	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
SQI91314.1|3272915_3273275_+	Phage repressor protein C2	NA	B1B6L9	Salmonella_phage	100.0	3.7e-64
SQI91316.1|3273628_3273931_+	antitermination protein	NA	I6S5Z3	Salmonella_phage	95.0	1.6e-47
SQI91318.1|3274009_3275128_+	Gp53	NA	Q5G8T6	Enterobacteria_phage	72.3	1.6e-68
SQI91319.1|3275308_3275473_+	cIII protein family	NA	K7P848	Enterobacteria_phage	70.0	5.7e-12
SQI91321.1|3275457_3275610_+	Bacteriophage lambda Kil protein	NA	NA	NA	NA	NA
SQI91323.1|3275606_3275714_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91325.1|3275694_3276003_+	Uncharacterised protein	NA	K7PJM4	Enterobacteria_phage	95.1	4.0e-51
SQI91327.1|3275999_3276911_+	recombination and repair protein RecT	NA	K7PKG9	Enterobacteria_phage	99.3	1.1e-168
SQI91329.1|3276894_3277377_+	Siphovirus Gp157	NA	K7P6T5	Enterobacteria_phage	98.1	4.6e-78
SQI91335.1|3277719_3277887_+	prophage protein	NA	A0A1V0E5L8	Salmonella_phage	100.0	1.3e-24
SQI91336.1|3277883_3278138_+	Uncharacterised protein	NA	A0A1V0E5L1	Salmonella_phage	100.0	3.4e-40
SQI91339.1|3278124_3278991_+	Ead protein	NA	A0A1V0E5L5	Salmonella_phage	99.7	1.6e-158
SQI91340.1|3279214_3279970_+	Eaa protein	NA	Q858C8	Salmonella_phage	100.0	2.1e-125
SQI91342.1|3279969_3280242_+	Uncharacterised protein	NA	A0A2H4FNB3	Salmonella_phage	100.0	6.9e-39
SQI91346.1|3280531_3281695_+|integrase	integrase	integrase	B9UDL9	Salmonella_phage	99.7	5.0e-227
3287098:3287114	attR	CGCATAGCCCCGCCAGT	NA	NA	NA	NA
>prophage 7
LS483481	Salmonella enterica subsp. enterica serovar Bredeney strain NCTC6026 genome assembly, chromosome: 1	4627083	3311818	3371061	4627083	transposase,tRNA,protease	Bacillus_phage(25.0%)	52	NA	NA
SQI91406.1|3311818_3312736_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI91407.1|3312732_3313185_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI91408.1|3313185_3313602_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI91415.1|3313711_3316213_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	6.7e-112
SQI91419.1|3316365_3317202_+	Secreted protein	NA	NA	NA	NA	NA
SQI91423.1|3318274_3318754_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI91427.1|3318870_3320523_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI91430.1|3320695_3321916_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI91434.1|3321927_3322053_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI91438.1|3322130_3323807_+	transport protein	NA	NA	NA	NA	NA
SQI91442.1|3323855_3325160_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI91446.1|3325312_3326284_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.8	2.3e-15
SQI91450.1|3326280_3327243_-	ferrochelatase	NA	NA	NA	NA	NA
SQI91454.1|3327470_3328115_-	adenylate kinase	NA	NA	NA	NA	NA
SQI91458.1|3328466_3330341_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQI91461.1|3330451_3331057_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI91464.1|3331056_3331386_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI91467.1|3333473_3334025_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI91472.1|3334177_3334555_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI91475.1|3334635_3335151_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI91477.1|3335164_3335332_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI91480.1|3335401_3336337_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.1	1.6e-63
SQI91488.1|3336378_3339741_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI91490.1|3339859_3340513_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI91492.1|3340654_3341848_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI91498.1|3341870_3345020_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI91501.1|3345515_3345890_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI91504.1|3345917_3346136_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI91521.1|3346314_3346866_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI91522.1|3346983_3347454_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI91524.1|3347509_3347650_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQI91526.1|3347655_3347916_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI91528.1|3348140_3349691_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI91530.1|3349999_3350311_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI91532.1|3350343_3350913_-	lipoprotein	NA	NA	NA	NA	NA
SQI91534.1|3351127_3351988_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI91536.1|3352087_3353374_-	ammonium transporter	NA	NA	NA	NA	NA
SQI91538.1|3353405_3353744_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI91540.1|3353956_3355738_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	5.4e-39
SQI91542.1|3355730_3357503_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQI91545.1|3357543_3358002_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI91547.1|3358114_3359170_+	lyase	NA	NA	NA	NA	NA
SQI91549.1|3359218_3360037_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI91551.1|3360137_3361838_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI91553.1|3361902_3362598_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	9.3e-88
SQI91555.1|3362705_3363104_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI91557.1|3363207_3363582_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI91559.1|3363731_3365603_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI91561.1|3365893_3366166_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI91563.1|3366374_3368729_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQI91565.1|3368914_3370186_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQI91567.1|3370437_3371061_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
