assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478155.1_47328_D01	LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	1	626293-626391	1	CRISPRCasFinder	no	RT	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Unclear	CTTCGGAACAAAATCAATCAGTT	23	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|168aa|up_2|LS483474.1_623925_624429_+,NA|130aa|up_0|LS483474.1_625768_626158_-,NA|160aa|down_2|LS483474.1_628113_628593_+,NA|131aa|down_3|LS483474.1_629177_629570_-,NA|61aa|down_4|LS483474.1_630288_630471_+,NA|155aa|down_8|LS483474.1_635555_636020_+,NA|130aa|down_9|LS483474.1_636292_636682_+	NA|673aa|up_9|LS483474.1_612617_614636_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|460aa|up_8|LS483474.1_614806_616186_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|up_7|LS483474.1_616615_618136_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|522aa|up_6|LS483474.1_618539_620105_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|215aa|up_5|LS483474.1_620101_620746_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|256aa|up_4|LS483474.1_620981_621749_+	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism]	NA|477aa|up_3|LS483474.1_622296_623727_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|168aa|up_2|LS483474.1_623925_624429_+	NA	NA|115aa|up_1|LS483474.1_624994_625339_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|130aa|up_0|LS483474.1_625768_626158_-	NA	NA|46aa|down_0|LS483474.1_627084_627222_+	pfam02753, PapD_C, Pili assembly chaperone PapD, C-terminal domain	NA|195aa|down_1|LS483474.1_627348_627933_+	PRK15223, PRK15223, fimbrial biogenesis outer membrane usher protein	NA|160aa|down_2|LS483474.1_628113_628593_+	NA	NA|131aa|down_3|LS483474.1_629177_629570_-	NA	NA|61aa|down_4|LS483474.1_630288_630471_+	NA	NA|225aa|down_5|LS483474.1_631203_631878_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|837aa|down_6|LS483474.1_632004_634515_+	PRK15223, PRK15223, fimbrial biogenesis outer membrane usher protein	RT|326aa|down_7|LS483474.1_634532_635510_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|155aa|down_8|LS483474.1_635555_636020_+	NA	NA|130aa|down_9|LS483474.1_636292_636682_+	NA
GCA_900478155.1_47328_D01	LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	2	629705-629803	2	CRISPRCasFinder	no	RT	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Unclear	CTTCGGAACAAAATCAATCAGTT	23	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|168aa|up_6|LS483474.1_623925_624429_+,NA|130aa|up_4|LS483474.1_625768_626158_-,NA|160aa|up_1|LS483474.1_628113_628593_+,NA|131aa|up_0|LS483474.1_629177_629570_-,NA|61aa|down_0|LS483474.1_630288_630471_+,NA|155aa|down_4|LS483474.1_635555_636020_+,NA|130aa|down_5|LS483474.1_636292_636682_+,NA|124aa|down_6|LS483474.1_636694_637066_-,NA|41aa|down_7|LS483474.1_637223_637346_-,NA|135aa|down_8|LS483474.1_637362_637767_-,NA|120aa|down_9|LS483474.1_637893_638253_+	NA|215aa|up_9|LS483474.1_620101_620746_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|256aa|up_8|LS483474.1_620981_621749_+	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism]	NA|477aa|up_7|LS483474.1_622296_623727_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|168aa|up_6|LS483474.1_623925_624429_+	NA	NA|115aa|up_5|LS483474.1_624994_625339_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|130aa|up_4|LS483474.1_625768_626158_-	NA	NA|46aa|up_3|LS483474.1_627084_627222_+	pfam02753, PapD_C, Pili assembly chaperone PapD, C-terminal domain	NA|195aa|up_2|LS483474.1_627348_627933_+	PRK15223, PRK15223, fimbrial biogenesis outer membrane usher protein	NA|160aa|up_1|LS483474.1_628113_628593_+	NA	NA|131aa|up_0|LS483474.1_629177_629570_-	NA	NA|61aa|down_0|LS483474.1_630288_630471_+	NA	NA|225aa|down_1|LS483474.1_631203_631878_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|837aa|down_2|LS483474.1_632004_634515_+	PRK15223, PRK15223, fimbrial biogenesis outer membrane usher protein	RT|326aa|down_3|LS483474.1_634532_635510_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|155aa|down_4|LS483474.1_635555_636020_+	NA	NA|130aa|down_5|LS483474.1_636292_636682_+	NA	NA|124aa|down_6|LS483474.1_636694_637066_-	NA	NA|41aa|down_7|LS483474.1_637223_637346_-	NA	NA|135aa|down_8|LS483474.1_637362_637767_-	NA	NA|120aa|down_9|LS483474.1_637893_638253_+	NA
GCA_900478155.1_47328_D01	LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	3	1109009-1111050	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	33,33,15	33	TypeI-E	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA	NA|245aa|up_9|LS483474.1_1098264_1098999_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|LS483474.1_1099086_1100040_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|LS483474.1_1100479_1103143_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|LS483474.1_1103154_1104711_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LS483474.1_1104707_1105244_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LS483474.1_1105257_1106313_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LS483474.1_1106323_1107070_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LS483474.1_1107051_1107702_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LS483474.1_1107698_1108619_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483474.1_1108618_1108912_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483474.1_1111064_1112111_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483474.1_1112361_1113270_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483474.1_1113279_1114719_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483474.1_1114705_1115311_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483474.1_1115361_1115685_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483474.1_1115875_1116187_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483474.1_1116205_1116916_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483474.1_1116915_1117395_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483474.1_1117391_1118441_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483474.1_1118421_1119183_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900478155.1_47328_D01	LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	4	4369703-4369921	4	CRISPRCasFinder	no	RT	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Unclear	GGAAGAGTATCTTGATCTTAGTCGATGGATGGGTTTACCCCTGAGGGCGCTAAG	54	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,PD-DExK,RT,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|92aa|up_9|LS483474.1_4362879_4363155_-,NA|89aa|up_1|LS483474.1_4368561_4368828_+,NA|286aa|down_0|LS483474.1_4370010_4370868_-,NA|132aa|down_1|LS483474.1_4370864_4371260_-	NA|92aa|up_9|LS483474.1_4362879_4363155_-	NA	NA|139aa|up_8|LS483474.1_4363396_4363813_+	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|155aa|up_7|LS483474.1_4363933_4364398_+	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|203aa|up_6|LS483474.1_4364390_4364999_+	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_5|LS483474.1_4365005_4365656_+	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|178aa|up_4|LS483474.1_4365631_4366165_+	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|136aa|up_3|LS483474.1_4366161_4366569_+	TIGR03765, conserved_hypothetical_protein, integrating conjugative element protein, PFL_4695 family	NA|678aa|up_2|LS483474.1_4366565_4368599_+	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family	NA|89aa|up_1|LS483474.1_4368561_4368828_+	NA	NA|227aa|up_0|LS483474.1_4368827_4369508_+	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family	NA|286aa|down_0|LS483474.1_4370010_4370868_-	NA	NA|132aa|down_1|LS483474.1_4370864_4371260_-	NA	NA|107aa|down_2|LS483474.1_4371735_4372056_+	TIGR01690, ICE_RAQPRD, integrative conjugative element protein, RAQPRD family	NA|134aa|down_3|LS483474.1_4372138_4372540_-	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|70aa|down_4|LS483474.1_4372989_4373199_+	pfam11660, DUF3262, Protein of unknown function (DUF3262)	NA|109aa|down_5|LS483474.1_4373217_4373544_+	TIGR03745, conj_TIGR03745, integrating conjugative element membrane protein, PFL_4702 family	NA|118aa|down_6|LS483474.1_4373547_4373901_+	TIGR03750, hypothetical_protein, conjugative transfer region protein, TIGR03750 family	NA|209aa|down_7|LS483474.1_4373897_4374524_+	TIGR03746, conj_TIGR03746, integrating conjugative element protein, PFL_4703 family	NA|261aa|down_8|LS483474.1_4374520_4375303_+	pfam11920, DUF3438, Protein of unknown function (DUF3438)	NA|446aa|down_9|LS483474.1_4375299_4376637_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family
