The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	839485	877163	5219421	transposase	Enterobacteria_phage(18.18%)	34	NA	NA
SQI59257.1|839485_839704_+|transposase	transposase IS401	transposase	Q6H9S6	Enterobacteria_phage	81.8	1.7e-19
SQI59258.1|840384_841437_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	50.4	9.8e-97
SQI59259.1|841605_842886_+	membrane protein	NA	NA	NA	NA	NA
SQI59260.1|842911_844102_+	mandelate racemase	NA	Q6A202	Oenococcus_phage	31.6	7.5e-45
SQI59261.1|844157_845420_+	membrane protein	NA	NA	NA	NA	NA
SQI59262.1|845595_845694_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI59268.1|845858_846275_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI59269.1|846776_846983_+	Hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI59270.1|847248_848202_-	Transcriptional regulator lsrR	NA	NA	NA	NA	NA
SQI59271.1|848428_849814_+	D-mannonate oxidoreductase	NA	H8ZJP8	Ostreococcus_tauri_virus	30.9	6.9e-50
SQI59272.1|849797_851267_+	xylulose kinase	NA	NA	NA	NA	NA
SQI59273.1|851327_852293_+	D-ribose-binding periplasmic protein	NA	NA	NA	NA	NA
SQI59274.1|852357_853857_+	D-ribose transporter ATP binding protein	NA	G3M9Y6	Bacillus_virus	28.3	1.4e-11
SQI59275.1|853873_854854_+	ribose ABC transporter permease	NA	NA	NA	NA	NA
SQI59276.1|855034_855970_-	putative DMT superfamily transporter inner membrane protein	NA	NA	NA	NA	NA
SQI59277.1|855966_857094_-	L-cysteine desulfurase	NA	H7BUW1	unidentified_phage	33.1	6.7e-19
SQI59278.1|857100_858114_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI59282.1|858672_860145_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI59283.1|860414_861719_-	Transposase and inactivated derivatives, TnpA family	NA	NA	NA	NA	NA
SQI59284.1|861867_862440_+	Min	NA	A0JC18	Ralstonia_phage	39.1	7.5e-27
SQI59287.1|862452_862974_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI59292.1|863612_865067_+	Sialic acid transporter (permease) NanT	NA	Q6JIH2	Burkholderia_virus	25.6	1.6e-09
SQI59312.1|865400_866192_+|transposase	transposase IS1113	transposase	A0A0K2CZ57	Paenibacillus_phage	28.9	4.0e-18
SQI59313.1|866185_866461_+	O6-methylguanine-DNA-alkyltransferase	NA	NA	NA	NA	NA
SQI59314.1|866486_866687_+|transposase	transposase	transposase	A0A0N7BVE9	Escherichia_phage	83.6	3.1e-20
SQI59315.1|866683_869662_-|transposase	transposase	transposase	A0A1B0V7H9	Salmonella_phage	53.0	3.9e-292
SQI59316.1|869892_870471_+	resolvase	NA	NA	NA	NA	NA
SQI59317.1|870773_872525_+	Uncharacterized protein containing caspase domain	NA	NA	NA	NA	NA
SQI59318.1|872570_873077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI59319.1|873073_873379_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI59320.1|874088_874412_+	Antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
SQI59321.1|874404_874797_+	ACT domain-containing protein	NA	NA	NA	NA	NA
SQI59322.1|874775_875501_+	arsR family transcriptional regulator	NA	NA	NA	NA	NA
SQI59323.1|875555_877163_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	1294569	1303899	5219421	integrase	Pseudomonas_phage(28.57%)	13	1295953:1295969	1309984:1310000
SQI60944.1|1294569_1295142_-	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)	NA	A0A0M3LRS6	Mannheimia_phage	31.2	8.7e-15
SQI60945.1|1295843_1297730_-	DNA primase	NA	A0A1B0VP75	Pseudomonas_phage	36.9	1.9e-95
1295953:1295969	attL	ATCGCCCCCGCCGCATC	NA	NA	NA	NA
SQI60947.1|1297719_1298754_-	zinc-binding domain-containing protein, primase-helicase family	NA	A0A1B0VML8	Pseudomonas_phage	48.1	3.1e-39
SQI60950.1|1298746_1299067_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI60952.1|1299059_1299383_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI60955.1|1299375_1299558_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI60957.1|1299550_1299742_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI60959.1|1299734_1299923_-	phage immunity repressor protein	NA	A0A1W6JPK3	Morganella_phage	51.9	3.1e-06
SQI60961.1|1299912_1300146_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI60963.1|1300533_1301343_-	gp79	NA	A0A0R6PJV6	Moraxella_phage	39.6	1.0e-24
SQI60965.1|1301346_1301613_-	prophage regulatory protein	NA	NA	NA	NA	NA
SQI60967.1|1301727_1302555_-	Uncharacterised protein	NA	A0A2H4JEC4	uncultured_Caudovirales_phage	47.6	6.4e-11
SQI60969.1|1302645_1303899_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	45.2	1.2e-96
1309984:1310000	attR	ATCGCCCCCGCCGCATC	NA	NA	NA	NA
>prophage 3
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	1826538	1834693	5219421	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
SQI62258.1|1826538_1827486_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	4.8e-10
SQI62259.1|1827469_1828201_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI62260.1|1828181_1828289_-	membrane protein	NA	NA	NA	NA	NA
SQI62261.1|1828348_1829080_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI62262.1|1829302_1830988_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.4	1.9e-275
SQI62263.1|1830984_1831704_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI62264.1|1831750_1832221_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
SQI62265.1|1832367_1832505_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	58.7	1.5e-05
SQI62266.1|1832659_1834693_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.4	1.0e-54
>prophage 4
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	2011598	2037705	5219421	integrase,holin	Salmonella_phage(57.58%)	38	2004377:2004390	2019803:2019816
2004377:2004390	attL	TAGCCGCGCCGTCG	NA	NA	NA	NA
SQI62595.1|2011598_2012780_+|integrase	phage integrase family protein	integrase	A0A0M4QX09	Salmonella_phage	91.3	4.9e-214
SQI62596.1|2012760_2012952_-	Predicted transcriptional regulator	NA	A0A0M4RTZ2	Salmonella_phage	77.4	1.6e-21
SQI62597.1|2013128_2013371_-	putative bacteriophage protein	NA	A0A0M4S646	Salmonella_phage	97.5	2.2e-36
SQI62598.1|2013373_2014243_-	putative DNA methylase	NA	A0A0M4R347	Salmonella_phage	95.2	1.3e-158
SQI62632.1|2014239_2014920_-	Integration, recombination (Phage or Prophage)	NA	A0A0M3ULE0	Salmonella_phage	99.6	2.7e-132
SQI62647.1|2014916_2015702_-	Recombinational DNA repair protein RecT (prophage associated)	NA	A0A0M4RD39	Salmonella_phage	98.9	8.2e-149
SQI62648.1|2015707_2016004_-	Host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	98.0	3.4e-47
SQI62649.1|2016084_2016234_-	Bacteriophage lambda Kil protein	NA	NA	NA	NA	NA
SQI62650.1|2016237_2016465_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI62651.1|2016775_2017177_-	putative prophage protein HTH	NA	A0A0M4REM4	Salmonella_phage	97.7	3.7e-65
SQI62652.1|2017204_2017588_-	regulator	NA	A0A0M4R5D1	Salmonella_phage	99.2	6.3e-62
SQI62653.1|2017664_2017928_+	phage regulatory protein	NA	A0A0M4QX15	Salmonella_phage	98.7	1.3e-37
SQI62654.1|2017947_2018271_+	repressor	NA	H6WRX6	Salmonella_phage	59.1	7.2e-27
SQI62655.1|2018362_2019199_+	replication protein O	NA	K7PGT1	Enterobacteria_phage	51.5	4.9e-51
SQI62656.1|2019195_2019891_+	replication protein O of prophage CP-933X	NA	G8C7U6	Escherichia_phage	45.9	1.2e-55
2019803:2019816	attR	TAGCCGCGCCGTCG	NA	NA	NA	NA
SQI62657.1|2019904_2020504_+	Uncharacterised protein	NA	M1F3E2	Salmonella_phage	69.7	6.6e-74
SQI62658.1|2020500_2020944_+	prophage protein	NA	NA	NA	NA	NA
SQI62659.1|2021285_2022248_-	Putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI62660.1|2022357_2022468_-	Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain	NA	A0A0N7C055	Escherichia_phage	88.9	1.9e-08
SQI62661.1|2023156_2023390_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	85.7	1.4e-32
SQI62662.1|2023789_2024392_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
SQI62663.1|2024391_2024598_+	Phage protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
SQI62664.1|2024600_2025206_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	84.7	1.5e-70
SQI62671.1|2025202_2025340_+	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.1e-08
SQI62673.1|2025339_2026149_+	molecular chaperone	NA	M9NZB0	Enterobacteria_phage	69.9	5.3e-111
SQI62683.1|2026451_2026949_-	Uncharacterised protein	NA	A0A077K9U2	Edwardsiella_phage	53.3	8.2e-38
SQI62685.1|2027181_2027532_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.7	1.2e-46
SQI62687.1|2027518_2027968_+	Lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	4.6e-80
SQI62688.1|2027964_2028438_+	lysozyme	NA	Q56118	Enterobacteria_phage	74.7	3.7e-56
SQI62690.1|2028476_2028854_+	Uncharacterised protein	NA	M1FPD9	Enterobacteria_phage	67.0	1.0e-35
SQI62691.1|2029053_2029584_+	phage protein	NA	B8K1H1	Salmonella_phage	94.3	3.2e-88
SQI62692.1|2029668_2030640_+	Terminase small subunit	NA	C5IHM0	Burkholderia_virus	33.0	3.9e-23
SQI62693.1|2030629_2031901_+	Uncharacterised protein	NA	A0A0U2JTW9	Escherichia_phage	39.0	1.6e-85
SQI62694.1|2031900_2033340_+	Protein of uncharacterised function (DUF1073)	NA	A0A0U2S5X9	Escherichia_phage	38.0	1.7e-91
SQI62695.1|2033311_2034220_+	Uncharacterised protein	NA	A0A0U2I1R8	Escherichia_phage	44.3	3.3e-53
SQI62698.1|2034188_2035763_+	nudix hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	1.7e-20
SQI62704.1|2035783_2036656_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI62705.1|2036673_2037705_+	Uncharacterized protein conserved in bacteria	NA	A0A0U2QQI2	Escherichia_phage	45.5	1.9e-73
>prophage 5
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	2102315	2138366	5219421	integrase,transposase	Escherichia_phage(14.29%)	28	2126421:2126480	2138367:2138516
SQI64226.1|2102315_2103071_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI64229.1|2103858_2103978_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64231.1|2104483_2106481_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64233.1|2106538_2107768_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64235.1|2107772_2107997_+	Insertion element IS630 uncharacterized 39 kDa protein ISO-IS200 39 kDa protein	NA	NA	NA	NA	NA
SQI64236.1|2108060_2109332_-|transposase	transposase	transposase	Q9MCT5	Escherichia_phage	89.1	3.7e-159
SQI64238.1|2110310_2111108_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64240.1|2111577_2112444_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64242.1|2113861_2114152_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64244.1|2114266_2114821_+	putative fimbrial protein StkG	NA	NA	NA	NA	NA
SQI64246.1|2115026_2115701_-	DNA-binding protein	NA	NA	NA	NA	NA
SQI64248.1|2116738_2117341_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64249.1|2118149_2119472_+	integral membrane transport protein	NA	S4TR35	Salmonella_phage	23.5	4.3e-25
SQI64250.1|2119464_2120406_+	oxaloacetate decarboxylase alpha subunit	NA	E5EQ69	Micromonas_sp._RCC1109_virus	29.6	1.9e-19
SQI64251.1|2120402_2121119_+	Alpha/beta hydrolase family	NA	NA	NA	NA	NA
SQI64252.1|2121115_2123278_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQI64253.1|2123285_2123954_+	4-hydroxy-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
SQI64254.1|2123950_2124844_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64255.1|2124809_2125703_-	putative transcription regulator protein	NA	NA	NA	NA	NA
SQI64256.1|2125865_2126420_-|integrase	bacteriophage integrase	integrase	G8DCP8	Silicibacter_phage	40.0	1.2e-24
2126421:2126480	attL	AAAGAACAGCAGCGACAGCTTAAGCGCATACCGTGTCAGCAGCCTGCCGGAGTAGTTATC	NA	NA	NA	NA
SQI64258.1|2126553_2127123_-|integrase	bacteriophage integrase	integrase	E5AGD0	Erwinia_phage	36.9	1.7e-26
SQI64259.1|2127486_2128917_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQI64260.1|2129912_2132510_+	Putative hydroxymethyl transferase	NA	NA	NA	NA	NA
SQI64261.1|2132687_2134142_+	AMP nucleosidase	NA	NA	NA	NA	NA
SQI64262.1|2134498_2134684_-|integrase	integrase	integrase	A5VW56	Enterobacteria_phage	48.1	1.8e-06
SQI64263.1|2134867_2137108_+	Phage-related lysozyme (muraminidase)	NA	NA	NA	NA	NA
SQI64264.1|2137107_2137692_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64265.1|2137811_2138366_-|integrase	bacteriophage integrase	integrase	A0A0U1UNT3	Pseudomonas_phage	38.2	2.5e-19
2138367:2138516	attR	AAAGAACAGCAGCGACAGCTTAAGCGCATACCGTGTCAGCAGCCTGCCGGAGTAGTTATCCGTCCGGGATAATAATTCTGGTAGTTTCTCAAGCGGCAGGGCCGGGTAATGCTGTGTTTCCGGCGGCGTAAATTCACCGTCCAGATCCAG	NA	NA	NA	NA
>prophage 6
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	2278810	2284422	5219421		Enterobacteria_phage(33.33%)	8	NA	NA
SQI64582.1|2278810_2279029_+	Lysis protein S	NA	H9C183	Pectobacterium_phage	40.0	1.5e-07
SQI64583.1|2279009_2279366_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	62.4	3.1e-31
SQI64584.1|2280982_2281429_+	pertussis-like toxin subunit	NA	NA	NA	NA	NA
SQI64585.1|2281425_2282157_+	pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	52.0	2.3e-60
SQI64586.1|2282353_2282896_+	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	65.9	4.0e-70
SQI64587.1|2282862_2283102_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64588.1|2283073_2283499_-	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.2	1.4e-14
SQI64589.1|2283609_2284422_-	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	48.7	2.7e-62
>prophage 7
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	2921062	2970702	5219421	coat,capsid,integrase,holin,tRNA,tail,portal	Salmonella_phage(50.77%)	70	2929495:2929554	2970881:2970962
SQI65163.1|2921062_2921212_-|portal	Presumed portal vertex protein	portal	A0A0A7NPT9	Enterobacteria_phage	77.3	4.2e-14
SQI65164.1|2921340_2921577_-|portal	Presumed portal vertex protein	portal	A0A0A7NPT9	Enterobacteria_phage	73.1	1.1e-24
SQI65165.1|2921803_2921944_+	Uncharacterised protein	NA	A0A0A7NPZ4	Enterobacteria_phage	67.4	5.5e-08
SQI65166.1|2922298_2922598_-	integration host factor alpha-subunit	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
SQI65167.1|2922602_2924990_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQI65168.1|2925005_2925989_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
SQI65169.1|2926291_2926648_-	50S ribosomal subunit protein L20	NA	NA	NA	NA	NA
SQI65170.1|2926698_2926896_-	50S ribosomal subunit protein L35	NA	NA	NA	NA	NA
SQI65171.1|2926991_2927426_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
SQI65172.1|2927537_2929466_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.7	1.9e-130
2929495:2929554	attL	ATACGCAAGATCACATACAAAGAGAAAATTAATTTATTGACAGTGAGTTGTGTATCCATC	NA	NA	NA	NA
SQI65173.1|2930147_2930396_+	Tyrosine recombinase xerD	NA	A5VW56	Enterobacteria_phage	69.7	9.2e-22
SQI65174.1|2930544_2931630_+	acyltransferase	NA	NA	NA	NA	NA
SQI65175.1|2931864_2933769_-|tail	Bifunctional tail protein Includes: Tailspike-protein; TSP; Includes: RecName: Full=Endorhamnosidase;Endo-1,3-alpha-L-rhamnosidase	tail	A0A0M4RD19	Salmonella_phage	99.8	0.0e+00
SQI65176.1|2933968_2934868_-	phage antirepressor protein	NA	Q0H8C7	Salmonella_phage	88.7	2.0e-154
SQI65177.1|2935441_2935624_+	Mnt	NA	A0A2H4FVY6	Salmonella_phage	83.1	4.8e-20
SQI65178.1|2935616_2935886_+	Uncharacterised protein	NA	A0A2H4FNC7	Salmonella_phage	100.0	2.9e-45
SQI65179.1|2935892_2936342_+	Uncharacterised protein	NA	A0A2H4FNB7	Salmonella_phage	96.0	4.5e-67
SQI65180.1|2936793_2938938_-	Uncharacterised protein	NA	A0A0A0P1R1	Enterobacteria_phage	28.5	2.9e-47
SQI65181.1|2938922_2940266_-	DNA injection protein	NA	A0A0M5M1J8	Salmonella_phage	94.9	2.6e-227
SQI65182.1|2940275_2940965_-	DNA transfer protein	NA	A0A192Y6A3	Salmonella_phage	98.3	2.3e-115
SQI65183.1|2940967_2941423_-|capsid	Phage capsid and scaffold protein	capsid	E7C9U3	Salmonella_phage	100.0	1.8e-87
SQI65184.1|2941422_2942061_-	packaged DNA stabilization protein gp26	NA	A0A088CPT1	Enterobacteria_phage	97.2	1.5e-87
SQI65185.1|2942064_2943483_-	DNA stabilization protein	NA	B9UDK6	Salmonella_phage	97.0	4.7e-272
SQI65186.1|2943442_2943943_-	Gp4	NA	A0A192Y830	Salmonella_phage	98.8	3.9e-88
SQI65187.1|2943926_2944487_-	prophage protein	NA	E7C9T9	Salmonella_phage	97.8	1.6e-101
SQI65188.1|2944527_2945820_-|coat	coat protein	coat	A0A075B8L2	Enterobacteria_phage	99.5	9.4e-243
SQI65189.1|2945819_2946731_-	scaffolding protein	NA	A0A192Y6T4	Salmonella_phage	99.3	5.4e-160
SQI65190.1|2946744_2948922_-|portal	portal protein	portal	A0A0M4RCZ3	Salmonella_phage	97.7	0.0e+00
SQI65191.1|2948970_2949471_+	endonuclease	NA	A0A0M4R2Z1	Salmonella_phage	98.2	1.4e-93
SQI65192.1|2949474_2950935_-	Uncharacterised protein	NA	W6MW26	Pseudomonas_phage	75.6	4.1e-218
SQI65193.1|2950934_2951372_-	Uncharacterised protein	NA	C7U0V7	Enterobacteria_phage	91.4	9.4e-62
SQI65194.1|2951374_2951617_-	Orf80	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
SQI65195.1|2951830_2952316_-	T5orf172 domain	NA	C6ZR70	Salmonella_phage	99.4	1.9e-87
SQI65196.1|2952516_2952669_-	Uncharacterised protein	NA	K7PKL2	Enterobacteria_phage	98.0	2.8e-21
SQI65197.1|2952656_2953124_-	endopeptidase	NA	Q76H63	Enterobacteria_phage	85.8	7.9e-67
SQI65198.1|2953120_2953234_-	Uncharacterised protein	NA	I6S1P5	Salmonella_phage	96.8	1.1e-09
SQI65199.1|2953212_2953716_-	Phage lysozyme (muraminidase)	NA	A0A1R3Y5W5	Salmonella_virus	98.2	5.0e-91
SQI65200.1|2953687_2953891_-|holin	gp13 holin, class II	holin	I6R0S9	Salmonella_phage	97.0	3.0e-31
SQI65201.1|2954354_2954873_-	gp23-like protein	NA	A0A192Y911	Salmonella_phage	98.8	2.6e-95
SQI65202.1|2954869_2955052_-	protein Niprotein NZ	NA	C6ZR61	Salmonella_phage	95.0	1.0e-22
SQI65203.1|2955039_2955510_-	Uncharacterised protein	NA	C6ZR60	Salmonella_phage	95.5	1.3e-88
SQI65204.1|2955490_2955727_-	Uncharacterised protein	NA	C6ZR59	Salmonella_phage	87.2	9.9e-34
SQI65205.1|2955719_2955890_-	NinF family protein	NA	Q5G8S2	Enterobacteria_phage	90.9	8.7e-24
SQI65206.1|2956059_2956587_-	putative DNA methyl transferase	NA	K7PJZ4	Enterobacterial_phage	95.4	2.4e-96
SQI65207.1|2956583_2957024_-	ninB protein	NA	K7PKW7	Enterobacterial_phage	97.9	6.5e-79
SQI65208.1|2957097_2958474_-	DNA helicase	NA	I6R0N4	Salmonella_phage	99.3	3.7e-253
SQI65209.1|2958470_2959286_-	Replication protein O	NA	A0A075B8J2	Enterobacteria_phage	95.9	3.9e-146
SQI65210.1|2959278_2959425_-	Protein of uncharacterised function (DUF2740)	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
SQI65211.1|2959459_2959738_-	cII	NA	A0A220NRS4	Escherichia_phage	93.5	2.2e-40
SQI65212.1|2959873_2960101_-	transcriptional regulator	NA	G9L677	Escherichia_phage	89.3	2.1e-33
SQI65213.1|2960178_2960889_+	repressor	NA	G9L676	Escherichia_phage	87.7	4.0e-118
SQI65214.1|2960974_2961898_+	prophage protein	NA	A0A1R3Y6Z6	Salmonella_virus	99.7	4.3e-181
SQI65215.1|2961933_2962143_-	prophage protein	NA	I6R0R9	Salmonella_phage	92.8	4.2e-28
SQI65216.1|2962408_2962894_+	antitermination protein	NA	C6ZR44	Salmonella_phage	84.5	8.9e-37
SQI65217.1|2962944_2963769_+	effector protein PipB2	NA	Q76H35	Enterobacteria_phage	88.0	7.8e-33
SQI65218.1|2963768_2963999_+	Uncharacterised protein	NA	A0A1B0VMC0	Pseudomonas_phage	48.1	5.7e-10
SQI65219.1|2964331_2964445_+	Bacteriophage lambda Kil protein	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
SQI65220.1|2964441_2964630_+	Uncharacterised protein	NA	C6ZR38	Salmonella_phage	100.0	1.3e-28
SQI65221.1|2964638_2965346_+	recombinase	NA	A0A2H4FN95	Salmonella_phage	98.7	1.7e-137
SQI65222.1|2965345_2965630_+	anti-RecBCD	NA	Q76H41	Enterobacteria_phage	98.9	1.8e-45
SQI65223.1|2965676_2965970_+	anti-RecBCD protein 2	NA	A0A0N7CAQ6	Salmonella_phage	99.0	4.2e-50
SQI65224.1|2965980_2966151_+	prophage protein	NA	A0A0N7CAQ8	Salmonella_phage	100.0	3.5e-25
SQI65225.1|2966138_2966645_+	Eae protein	NA	A0A0N6WGF1	Salmonella_phage	70.2	5.1e-59
SQI65226.1|2966641_2967433_+	Uncharacterised protein	NA	A0A0P0ZFW8	Escherichia_phage	31.9	1.4e-10
SQI65227.1|2967435_2967618_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65228.1|2967621_2968272_+	phage protein	NA	A0A2H4FNA7	Salmonella_phage	70.0	6.7e-48
SQI65229.1|2968268_2968694_+	Gp37	NA	Q858C8	Salmonella_phage	75.6	1.7e-28
SQI65230.1|2968810_2969221_+	Gp37	NA	Q5G8V2	Enterobacteria_phage	92.7	8.9e-14
SQI65231.1|2969296_2969545_+	Uncharacterised protein	NA	A0A1P8DTG1	Proteus_phage	56.7	9.2e-14
SQI65232.1|2969490_2970702_-|integrase	phage integrase family protein	integrase	I6R9B6	Salmonella_phage	98.8	8.8e-235
2970881:2970962	attR	ATACGCAAGATCACATACAAAGAGAAAATTAATTTATTGACAGTGAGTTGTGTATCCATCTAACCAACAATTGCTAAATTGG	NA	NA	NA	NA
>prophage 8
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	3176742	3198001	5219421	integrase,transposase	Stx2-converting_phage(50.0%)	22	3171458:3171471	3192539:3192552
3171458:3171471	attL	CAGTGCGCGTTGGG	NA	NA	NA	NA
SQI65439.1|3176742_3177045_+|transposase	transposase	transposase	S5FM71	Shigella_phage	70.0	2.3e-35
SQI65440.1|3177016_3177619_+|integrase	bacteriophage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	41.3	4.7e-27
SQI65441.1|3177673_3178153_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI65442.1|3178211_3178835_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI65443.1|3180940_3181834_-	regulatory protein	NA	NA	NA	NA	NA
SQI65444.1|3181946_3182528_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65445.1|3182672_3183728_+	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component	NA	NA	NA	NA	NA
SQI65446.1|3184561_3184846_+	Transposase insN for insertion sequence element IS911A	NA	NA	NA	NA	NA
SQI65447.1|3184893_3185697_+	Insertion element IS600 uncharacterized 31 kDa protein ISO-S3 31 kDa protein	NA	U5P429	Shigella_phage	55.0	1.3e-80
SQI65448.1|3185936_3186893_-	Predicted metal-dependent hydrolase of the TIM-barrel fold	NA	NA	NA	NA	NA
SQI65449.1|3186902_3188204_-	hexonate sugar transport protein	NA	NA	NA	NA	NA
SQI65450.1|3188350_3188854_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQI65451.1|3188945_3190463_-	D-galactarate dehydratase	NA	NA	NA	NA	NA
SQI65452.1|3190479_3191379_-	2-keto-3-deoxy-galactonate aldolase	NA	NA	NA	NA	NA
SQI65453.1|3191621_3192386_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SQI65454.1|3192611_3192848_+	Uncharacterised protein	NA	NA	NA	NA	NA
3192539:3192552	attR	CCCAACGCGCACTG	NA	NA	NA	NA
SQI65455.1|3192898_3193099_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65456.1|3195078_3196500_+	Transposase for transposon Tn5	NA	NA	NA	NA	NA
SQI65457.1|3196581_3196983_+|transposase	transposase	transposase	B6DZU5	Stx2-converting_phage	76.7	1.8e-51
SQI65458.1|3196979_3197327_+|transposase	putative transposase subunit	transposase	A0A0P0ZDM8	Stx2-converting_phage	93.0	8.5e-58
SQI65459.1|3197376_3197640_+|transposase	transposase IS66	transposase	A0A0P0ZBS5	Stx2-converting_phage	90.5	7.9e-32
SQI65460.1|3197701_3198001_-|transposase	IS3 transposase	transposase	NA	NA	NA	NA
>prophage 9
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	3375450	3429721	5219421	tRNA,tail,protease	Salmonella_phage(17.86%)	55	NA	NA
SQI65604.1|3375450_3376743_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-94
SQI65605.1|3377001_3378345_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	1.6e-80
SQI65606.1|3378354_3378966_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQI65607.1|3379108_3382975_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.8e-88
SQI65608.1|3383109_3383604_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SQI65609.1|3384151_3385120_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	45.2	7.2e-62
SQI65610.1|3385234_3387001_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	NA	W8CYL7	Bacillus_phage	24.5	1.7e-21
SQI65611.1|3387001_3388723_+	transport ATP-binding protein CydC	NA	W8CYL7	Bacillus_phage	23.3	4.9e-13
SQI65612.1|3388767_3389472_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
SQI65613.1|3389783_3390002_+	initiation factor IF-1	NA	NA	NA	NA	NA
SQI65614.1|3390092_3391004_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI65615.1|3391112_3391973_+	pirin-like protein	NA	NA	NA	NA	NA
SQI65616.1|3391992_3392670_+	Isochorismatase family protein	NA	NA	NA	NA	NA
SQI65617.1|3393091_3395368_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.1	1.4e-164
SQI65618.1|3395398_3395719_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
SQI65619.1|3396042_3396264_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQI65620.1|3396402_3398349_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	41.3	1.0e-38
SQI65621.1|3398345_3399464_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
SQI65622.1|3399609_3400560_+	virK protein	NA	NA	NA	NA	NA
SQI65623.1|3400556_3402215_-	putative ATP-dependent endonuclease of the OLDfamily YbjD subgroup	NA	NA	NA	NA	NA
SQI65624.1|3402415_3403315_+	Surface protein	NA	NA	NA	NA	NA
SQI65625.1|3403458_3405111_+	Hydroxylamine reductase	NA	NA	NA	NA	NA
SQI65626.1|3405122_3406091_+	oxidoreductase	NA	NA	NA	NA	NA
SQI65627.1|3406250_3407969_+	pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.2	4.9e-29
SQI65628.1|3408007_3409009_+	L-allo-threonine aldolase	NA	NA	NA	NA	NA
SQI65629.1|3409019_3410453_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
SQI65630.1|3410548_3411562_+	oxidoreductase	NA	NA	NA	NA	NA
SQI65631.1|3411558_3412389_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.1	1.1e-07
SQI65632.1|3412385_3412709_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQI65633.1|3413033_3413258_+	virulence protein MsgA	NA	K7PKR6	Enterobacteria_phage	78.1	1.4e-24
SQI65634.1|3413959_3414772_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	49.8	5.4e-63
SQI65635.1|3414934_3415246_+	Protein of uncharacterised function (DUF1353)	NA	A0A2K9VHJ4	Pseudomonas_phage	40.2	2.8e-12
SQI65636.1|3415473_3416025_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	65.0	4.7e-66
SQI65637.1|3416225_3416957_-	pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	52.4	1.3e-60
SQI65638.1|3416972_3417392_-	pertussis-like toxin subunit	NA	NA	NA	NA	NA
SQI65639.1|3417498_3417921_-	pertussis-like toxin subunit	NA	NA	NA	NA	NA
SQI65640.1|3418922_3419135_+	Uncharacterised protein	NA	A0A192Y5V6	Salmonella_phage	94.3	1.9e-28
SQI65641.1|3419131_3419533_+	Predicted membrane protein	NA	A0A192Y6F0	Salmonella_phage	95.2	7.1e-64
SQI65642.1|3419781_3420015_+	Uncharacterised protein	NA	A0A192Y6D5	Salmonella_phage	94.8	1.2e-34
SQI65643.1|3420289_3420931_+	glutathione S-transferase	NA	NA	NA	NA	NA
SQI65644.1|3421567_3422047_+	Domain of uncharacterised function (DUF336)	NA	NA	NA	NA	NA
SQI65645.1|3422105_3422249_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65646.1|3422422_3422542_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65647.1|3423256_3423370_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65648.1|3423378_3423732_-	Uncharacterized protein y4iH Flags: Precursor	NA	I1TQ41	Pseudomonas_phage	41.5	2.8e-16
SQI65649.1|3423856_3424435_-|tail	phage tail assembly protein	tail	Q9LA61	Enterobacterial_phage	51.9	3.8e-42
SQI65650.1|3424444_3424825_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65651.1|3424842_3425076_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65652.1|3425135_3425657_-|tail	Phage tail fibre adhesin Gp38	tail	J9Q7Y6	Salmonella_phage	34.6	1.3e-12
SQI65653.1|3425656_3425974_-|tail	putative phage tail protein	tail	J9Q6E3	Salmonella_phage	61.1	4.5e-21
SQI65654.1|3426165_3427176_-|tail	Phage tail fiber protein	tail	S5MDN9	Escherichia_phage	54.2	3.2e-12
SQI65655.1|3427262_3427445_+	Probable mRNA interferase HicA	NA	NA	NA	NA	NA
SQI65656.1|3427475_3427910_+	Uncharacterised protein	NA	Q7Y3V7	Yersinia_phage	73.4	5.1e-52
SQI65657.1|3427932_3428685_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI65658.1|3428992_3429721_+	Glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	35.8	5.1e-28
>prophage 10
LS483474	Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1	5219421	3774028	3832262	5219421	tRNA,transposase,protease	Bacillus_phage(23.08%)	51	NA	NA
SQI65968.1|3774028_3774946_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI65969.1|3774942_3775395_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI65970.1|3775395_3775812_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI65971.1|3775921_3778423_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.4	2.3e-112
SQI65972.1|3779557_3780037_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI65973.1|3780154_3781807_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI65974.1|3781979_3783200_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI65975.1|3783414_3785091_+	transport protein	NA	NA	NA	NA	NA
SQI65976.1|3785213_3786518_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI65977.1|3786670_3786811_+	acetyl esterase	NA	NA	NA	NA	NA
SQI65978.1|3786841_3787642_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.9	1.4e-15
SQI65979.1|3787638_3788601_-	ferrochelatase	NA	NA	NA	NA	NA
SQI65980.1|3788788_3789433_-	adenylate kinase	NA	NA	NA	NA	NA
SQI65981.1|3789665_3791540_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.4	1.5e-116
SQI65982.1|3791650_3792256_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI65983.1|3792255_3792585_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI65984.1|3794672_3795224_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	2.9e-28
SQI65985.1|3795376_3795754_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI65986.1|3795834_3796350_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI65987.1|3796363_3796531_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI65988.1|3796600_3797056_+	Transposase_31	NA	Q2A0A7	Sodalis_phage	53.5	4.4e-38
SQI65989.1|3797244_3797661_+|transposase	Putative transposase	transposase	Q2A0A7	Sodalis_phage	45.9	2.8e-07
SQI65990.1|3797702_3801065_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI65991.1|3801183_3801837_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI65992.1|3801978_3803172_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI65993.1|3803194_3806344_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI65994.1|3806841_3807216_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI65995.1|3807243_3807462_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI65996.1|3807641_3808193_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI65997.1|3808309_3808780_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI65998.1|3808980_3809241_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI65999.1|3809465_3811016_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI66000.1|3811324_3811636_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI66001.1|3811668_3812238_-	lipoprotein	NA	NA	NA	NA	NA
SQI66002.1|3812452_3813313_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI66003.1|3813419_3814706_-	ammonium transporter	NA	NA	NA	NA	NA
SQI66004.1|3814737_3815076_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI66005.1|3815279_3817061_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	28.2	3.2e-39
SQI66006.1|3817053_3818826_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.2e-52
SQI66007.1|3818866_3819325_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI66008.1|3819437_3820493_+	lyase	NA	NA	NA	NA	NA
SQI66009.1|3820543_3821362_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI66010.1|3821462_3823163_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI66011.1|3823227_3823923_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	67.1	1.8e-86
SQI66012.1|3824031_3824430_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI66013.1|3824533_3824908_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI66014.1|3825057_3826929_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI66015.1|3827219_3827492_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI66016.1|3827700_3830055_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
SQI66017.1|3830240_3831512_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
SQI66018.1|3831638_3832262_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.2e-64
