The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483469	Serratia plymuthica strain NCTC12961 genome assembly, chromosome: 1	5348135	799421	850810	5348135	tRNA,plate,tail	Salmonella_phage(21.62%)	69	NA	NA
SQI31965.1|799421_800180_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
SQI31967.1|800146_800467_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
SQI31972.1|800736_801039_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.5	1.1e-08
SQI31975.1|801234_801480_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	45.1	1.1e-11
SQI31978.1|801473_801914_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.2e-24
SQI31980.1|801877_802099_+	Protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA	NA
SQI31981.1|802424_803171_+	Murein hydrolase activator NlpD precursor	NA	NA	NA	NA	NA
SQI31982.1|803170_803410_+	Murein hydrolase activator NlpD precursor	NA	NA	NA	NA	NA
SQI31983.1|803464_803989_+	RNA polymerase sigma factor rpoS	NA	F4YCU2	Synechococcus_phage	43.8	8.2e-20
SQI31984.1|803945_804464_+	RNA polymerase sigma factor rpoS	NA	I1ZBD5	Salisaeta_icosahedral_phage	30.6	4.3e-13
SQI31985.1|804544_805693_-	DNA mismatch repair protein mutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	26.9	7.3e-21
SQI31986.1|805711_807100_-	DNA mismatch repair protein mutS	NA	NA	NA	NA	NA
SQI31987.1|808002_808281_+	N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA	NA
SQI31988.1|808292_808616_+	PTS system N,N'-diacetylchitobiose-specific EIIC component	NA	NA	NA	NA	NA
SQI31989.1|808602_809655_+	PTS system N,N'-diacetylchitobiose-specific EIIC component	NA	NA	NA	NA	NA
SQI31990.1|809703_811089_+	6-phospho-beta-glucosidase gmuD	NA	NA	NA	NA	NA
SQI31991.1|811103_811952_+	Chb operon repressor	NA	NA	NA	NA	NA
SQI31992.1|812105_812315_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI31993.1|812320_812866_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI31994.1|812900_814286_-	Uncharacterized MFS-type transporter ycaD	NA	NA	NA	NA	NA
SQI31995.1|814536_815025_+	Uncharacterized protein (competence- and mitomycin-induced)	NA	B5TK85	Pseudomonas_phage	48.4	4.5e-28
SQI31996.1|815137_816202_+	Recombinase A	NA	A0A2D1GPX2	Mycobacterium_phage	61.6	6.4e-112
SQI31997.1|816266_816773_+	Regulatory protein recX	NA	NA	NA	NA	NA
SQI31998.1|816905_817250_+|tRNA	Alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	46.5	1.2e-14
SQI31999.1|817291_817903_+|tRNA	Alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	42.2	1.1e-20
SQI32000.1|817871_818351_+|tRNA	Alanine--tRNA ligase	tRNA	NA	NA	NA	NA
SQI32001.1|818435_819077_+|tRNA	Alanine--tRNA ligase	tRNA	NA	NA	NA	NA
SQI32002.1|819015_819498_+|tRNA	Alanine--tRNA ligase	tRNA	NA	NA	NA	NA
SQI32003.1|819784_819970_+	Carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
SQI32004.1|820889_821456_+	Phosphatase YqaB	NA	NA	NA	NA	NA
SQI32005.1|821473_821881_+	Inner membrane protein yqaA	NA	NA	NA	NA	NA
SQI32006.1|821963_823526_+	Glutamate--cysteine ligase	NA	NA	NA	NA	NA
SQI32007.1|823692_824208_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
SQI32008.1|824279_825569_-	Putative Mg2+ and Co2+ transporter CorB	NA	NA	NA	NA	NA
SQI32009.1|825611_826466_-	Inner membrane protein ypjD	NA	NA	NA	NA	NA
SQI32010.1|826572_827934_+	p48	NA	NA	NA	NA	NA
SQI32011.1|828150_828399_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQI32012.1|828417_828966_+	21K	NA	NA	NA	NA	NA
SQI32013.1|829268_829787_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQI32015.1|829841_830198_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQI32021.1|830361_830580_-	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	66.2	1.8e-21
SQI32022.1|830668_831067_-	Phage protein D	NA	Q6K1G4	Salmonella_virus	40.7	2.4e-24
SQI32024.1|831123_831822_-	Phage protein D	NA	A0A0M5M5V5	Salmonella_phage	49.8	1.8e-54
SQI32031.1|831818_832223_-	Phage protein U	NA	A0A0F7LBX3	Escherichia_phage	55.6	9.7e-37
SQI32035.1|832293_832833_-	Uncharacterised protein	NA	E5G6Q1	Salmonella_phage	36.5	5.7e-08
SQI32082.1|832890_834351_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A2H4JE61	uncultured_Caudovirales_phage	31.4	1.6e-17
SQI32085.1|834498_834786_-|tail	Phage tail protein E	tail	A0A0F7LDQ8	Escherichia_phage	60.2	1.8e-24
SQI32089.1|834849_835359_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	69.0	1.3e-65
SQI32094.1|835372_835642_-|tail	Phage tail sheath protein	tail	S4TRX2	Salmonella_phage	75.0	2.1e-35
SQI32097.1|835631_836540_-|tail	Phage tail sheath protein	tail	F1BUU3	Erwinia_phage	77.0	5.1e-118
SQI32101.1|836681_837194_-|tail	Bacteriophage tail assembly protein	tail	Q37843	Escherichia_phage	52.4	3.2e-45
SQI32106.1|837197_839177_-|tail	Phage tail fibre repeat	tail	A0A0M3ULH6	Salmonella_phage	51.8	4.4e-58
SQI32109.1|839173_839704_-	Uncharacterised protein	NA	A0A2P1CAL1	Salmonella_phage	60.4	3.9e-54
SQI32113.1|839735_841517_-	Uncharacterised protein	NA	A0A2L0V120	Salmonella_phage	48.6	3.3e-169
SQI32116.1|841558_842467_-|tail	Bacteriophage P2-related tail formation protein	tail	A0A218M4J3	Erwinia_phage	66.1	7.2e-64
SQI32119.1|842459_843368_-	Uncharacterized homolog of phage Mu protein gp47	NA	A0A1J0I2M3	Salmonella_phage	78.1	9.5e-125
SQI32123.1|843372_843723_-	Gene 25-like lysozyme	NA	F1BUP4	Erwinia_phage	65.5	2.4e-36
SQI32124.1|843719_844355_-|plate	Phage P2 baseplate assembly protein gpV	plate	A0A0F7LBP2	Escherichia_phage	54.9	1.8e-58
SQI32125.1|844443_844908_-|tail	P2 phage tail completion protein R (GpR)	tail	F1BUP9	Erwinia_phage	56.3	4.8e-40
SQI32126.1|844977_845490_-	Phage-related lysozyme (muraminidase)	NA	A0A218M4K3	Erwinia_phage	64.7	8.2e-57
SQI32127.1|845473_845692_-	Uncharacterised protein	NA	B6SD15	Bacteriophage	50.9	2.8e-06
SQI32130.1|845695_845902_-	Phage Tail Protein X	NA	F1BUQ5	Erwinia_phage	68.7	3.8e-21
SQI32132.1|846105_846300_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI32133.1|846630_846852_-	DnaK suppressor protein	NA	A0A0M4S5Q7	Salmonella_phage	51.4	1.7e-11
SQI32134.1|846927_847236_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI32135.1|847465_848362_+	Bacteriophage CI repressor helix-turn-helix domain	NA	Q6K1G0	Salmonella_virus	44.7	4.2e-64
SQI32136.1|848407_849172_-	Putative salt-induced outer membrane protein	NA	NA	NA	NA	NA
SQI32137.1|849737_850289_+	Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	NA	A0A0G2SSM2	Proteus_phage	52.5	1.3e-39
SQI32138.1|850279_850810_+	Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	NA	S4W5F1	Pandoravirus	44.8	9.1e-35
>prophage 2
LS483469	Serratia plymuthica strain NCTC12961 genome assembly, chromosome: 1	5348135	1800739	1808309	5348135	protease,tRNA	Planktothrix_phage(16.67%)	8	NA	NA
SQI36252.1|1800739_1802725_+	Macrolide export ATP-binding/permease protein MacB	NA	G9BWD6	Planktothrix_phage	38.1	2.4e-35
SQI36254.1|1802820_1803042_-	Cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	3.0e-16
SQI36257.1|1803398_1803719_+|protease	ATP-dependent Clp protease adapter protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	8.2e-15
SQI36259.1|1803746_1804403_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A1L2CUT6	Pectobacterium_phage	27.6	2.1e-09
SQI36262.1|1804395_1806027_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	47.8	3.7e-143
SQI36266.1|1806241_1806460_-	Translation initiation factor IF-1	NA	NA	NA	NA	NA
SQI36269.1|1806566_1807292_-|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
SQI36272.1|1807322_1808309_-	Lipid A export ATP-binding/permease protein MsbA	NA	A0A1M7XV31	Cedratvirus	31.2	2.7e-16
>prophage 3
LS483469	Serratia plymuthica strain NCTC12961 genome assembly, chromosome: 1	5348135	3400747	3418188	5348135	protease,tail	Bodo_saltans_virus(33.33%)	19	NA	NA
SQI43339.1|3400747_3402277_-|protease	ATP-dependent zinc metalloprotease FtsH 2	protease	A0A2H4UTU5	Bodo_saltans_virus	30.5	3.3e-13
SQI43340.1|3402273_3402837_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43341.1|3402943_3404065_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43342.1|3404455_3405424_-	Uncharacterised protein	NA	M1NW06	Synechococcus_phage	38.6	2.7e-08
SQI43343.1|3405416_3406445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43344.1|3406462_3408349_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43346.1|3408441_3410169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43349.1|3410244_3410667_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43352.1|3410663_3411086_-	Gene 25-like lysozyme	NA	A0A2I7RVR8	Vibrio_phage	30.7	2.9e-07
SQI43354.1|3411106_3412696_-	Phage protein D	NA	NA	NA	NA	NA
SQI43355.1|3412692_3413382_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43357.1|3413378_3413546_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43360.1|3413542_3413995_-|tail	conserved hypothetical phage tail region protein	tail	NA	NA	NA	NA
SQI43362.1|3413991_3414696_-|tail	Phage tail sheath protein	tail	NA	NA	NA	NA
SQI43364.1|3414692_3415238_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43366.1|3415279_3415753_-|tail	Phage tail sheath protein	tail	NA	NA	NA	NA
SQI43367.1|3415692_3416580_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI43369.1|3416655_3417720_-|tail	Phage tail sheath protein	tail	NA	NA	NA	NA
SQI43372.1|3417738_3418188_-|tail	conserved hypothetical phage tail region protein	tail	NA	NA	NA	NA
>prophage 4
LS483469	Serratia plymuthica strain NCTC12961 genome assembly, chromosome: 1	5348135	4064460	4073881	5348135	integrase	Escherichia_phage(50.0%)	10	4064433:4064454	4076437:4076458
4064433:4064454	attL	ATTGGTATACGTTTAGGTATAC	NA	NA	NA	NA
SQI44706.1|4064460_4065696_+|integrase	Prophage CP4-57 integrase	integrase	A0A1B5FPC6	Escherichia_phage	48.4	9.1e-102
SQI44707.1|4065999_4067640_+	Uncharacterised protein	NA	P79669	Escherichia_phage	49.2	1.8e-145
SQI44708.1|4068364_4068619_-	DNA-binding transcriptional regulator	NA	A0A0F7LDQ9	Escherichia_phage	53.1	1.0e-12
SQI44709.1|4068621_4069341_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI44710.1|4069886_4070147_+	Predicted transcriptional regulator	NA	Q7M299	Enterobacteria_phage	53.8	4.2e-17
SQI44711.1|4070143_4070389_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI44712.1|4070748_4070940_+	Uncharacterised protein	NA	Q7M2A7	Enterobacteria_phage	63.5	2.1e-13
SQI44713.1|4070936_4071200_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI44714.1|4071196_4071535_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI44715.1|4071547_4073881_+	DNA primase TraC	NA	Q7M2A8	Enterobacteria_phage	57.5	2.0e-251
4076437:4076458	attR	ATTGGTATACGTTTAGGTATAC	NA	NA	NA	NA
