The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	411702	445933	4584925	tRNA,protease	Organic_Lake_phycodnavirus(100.0%)	45	NA	NA
SQI19974.1|411702_412668_-|tRNA	tRNA-dihydrouridine synthase B	tRNA	NA	NA	NA	NA
SQI19975.1|412933_413059_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19976.1|413046_413691_-	carbonic anhydrase	NA	NA	NA	NA	NA
SQI19977.1|413828_414710_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQI19978.1|414721_416173_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
SQI19979.1|416162_416405_-	Membrane protein	NA	NA	NA	NA	NA
SQI19980.1|416516_418451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19981.1|418805_420155_-	biotin carboxylase	NA	NA	NA	NA	NA
SQI19982.1|420165_420636_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA	NA
SQI19983.1|421028_421628_-	Membrane protein YedZ	NA	NA	NA	NA	NA
SQI19984.1|421628_422633_-	reductase	NA	NA	NA	NA	NA
SQI19985.1|422744_423719_-	oxidoreductase	NA	NA	NA	NA	NA
SQI19986.1|424127_425864_+	lipoprotein	NA	NA	NA	NA	NA
SQI19987.1|426171_427215_+	rod shape-determining protein mreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
SQI19988.1|427279_428335_+	rod shape-determining protein	NA	NA	NA	NA	NA
SQI19989.1|428334_428823_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQI19990.1|428880_429426_+	Septum formation protein Maf	NA	NA	NA	NA	NA
SQI19991.1|429415_429691_+	ribonuclease G	NA	NA	NA	NA	NA
SQI19992.1|429662_429878_+	ribonuclease G	NA	NA	NA	NA	NA
SQI19993.1|429944_430724_+	ribonuclease G	NA	NA	NA	NA	NA
SQI19994.1|430704_430887_+	ribonuclease G	NA	NA	NA	NA	NA
SQI19995.1|430993_431461_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19996.1|431590_431938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19997.1|431940_432306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19998.1|432295_432544_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI19999.1|432543_432993_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI20000.1|433110_433608_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI20001.1|433675_434794_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA	NA
SQI20002.1|434938_435502_+|protease	protease TldD	protease	NA	NA	NA	NA
SQI20003.1|435470_436181_+|protease	protease TldD	protease	NA	NA	NA	NA
SQI20004.1|436125_436350_+|protease	protease TldD	protease	NA	NA	NA	NA
SQI20005.1|436521_437076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI20006.1|437072_437450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI20007.1|437631_437835_+	electron transfer flavoprotein FixA	NA	NA	NA	NA	NA
SQI20008.1|437842_438508_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA	NA
SQI20009.1|438574_438775_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA	NA
SQI20010.1|438780_440748_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
SQI20011.1|440919_441192_+	putative ribonuclease inhibitor	NA	NA	NA	NA	NA
SQI20012.1|441251_441518_-	membrane protein	NA	NA	NA	NA	NA
SQI20013.1|441621_441885_-	membrane protein	NA	NA	NA	NA	NA
SQI20014.1|442250_442721_-	arginine repressor	NA	NA	NA	NA	NA
SQI20015.1|443134_444073_+	malate dehydrogenase	NA	NA	NA	NA	NA
SQI20016.1|444149_444863_-|protease	serine endoprotease	protease	NA	NA	NA	NA
SQI20017.1|444933_445218_-|protease	serine endoprotease	protease	NA	NA	NA	NA
SQI20018.1|445312_445933_-|protease	serine protease	protease	NA	NA	NA	NA
>prophage 2
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	506869	553458	4584925	tRNA,protease,transposase	Streptococcus_phage(28.57%)	57	NA	NA
SQI20121.1|506869_507256_+|tRNA	tRNA pseudouridine 55 synthase	tRNA	NA	NA	NA	NA
SQI20122.1|507082_507586_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI20123.1|507591_507813_+|tRNA	tRNA pseudouridine 55 synthase	tRNA	NA	NA	NA	NA
SQI20124.1|508475_510611_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA	NA
SQI20125.1|510720_511605_+	Lipoprotein nlpI precursor	NA	NA	NA	NA	NA
SQI20126.1|511732_513682_+	ATP-dependent RNA helicase DeaD	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.8	8.0e-52
SQI20127.1|513835_515080_+	tryptophan permease	NA	NA	NA	NA	NA
SQI20128.1|515165_515735_-	monooxygenase	NA	NA	NA	NA	NA
SQI20129.1|515854_516175_-	monooxygenase	NA	NA	NA	NA	NA
SQI20130.1|516281_516485_-|protease	putative protease	protease	NA	NA	NA	NA
SQI20131.1|516659_516863_-|protease	putative protease	protease	NA	NA	NA	NA
SQI20132.1|517175_517652_-|protease	protease	protease	NA	NA	NA	NA
SQI20133.1|517651_518011_-|protease	protease	protease	NA	NA	NA	NA
SQI20134.1|518379_518553_+	Putative lipid carrier protein	NA	NA	NA	NA	NA
SQI20135.1|518759_518903_+	Putative lipid carrier protein	NA	NA	NA	NA	NA
SQI20136.1|518896_519172_+	acetyltransferase	NA	NA	NA	NA	NA
SQI20137.1|519386_519704_-	putative endonuclease containing a URI domain protein	NA	S6DF82	Invertebrate_iridovirus	50.0	6.5e-12
SQI20138.1|519741_520239_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI20142.1|520163_520556_-	General stress protein 18	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	33.0	3.4e-10
SQI20144.1|520560_520683_-	General stress protein 18	NA	NA	NA	NA	NA
SQI20145.1|520810_521446_+	putative nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA	NA
SQI20146.1|521512_522088_-	lipoprotein	NA	NA	NA	NA	NA
SQI20147.1|522097_522280_-	DnaA initiator-associating protein DiaA	NA	NA	NA	NA	NA
SQI20148.1|522308_522686_-	DnaA initiator-associating protein DiaA	NA	NA	NA	NA	NA
SQI20161.1|522707_523103_-	Endonuclease	NA	NA	NA	NA	NA
SQI20163.1|523060_523948_-	LppC putative lipoprotein	NA	NA	NA	NA	NA
SQI20164.1|523929_524394_-	LppC putative lipoprotein	NA	NA	NA	NA	NA
SQI20180.1|524446_525136_-	LppC putative lipoprotein	NA	NA	NA	NA	NA
SQI20181.1|525170_526034_+	rRNA small subunit methyl transferase I	NA	M1PLC5	Streptococcus_phage	42.6	1.1e-50
SQI20182.1|526411_527284_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQI20183.1|527296_528451_-	Putative tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQI20184.1|528756_529890_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
SQI20185.1|529975_531271_-	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	NA	NA	NA	NA	NA
SQI20186.1|531516_532326_+	DNA-binding transcriptional regulator AgaR	NA	NA	NA	NA	NA
SQI20187.1|532435_534007_-	D-galactarate dehydratase	NA	NA	NA	NA	NA
SQI20188.1|534280_534445_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI20189.1|534535_535306_+	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
SQI20190.1|535331_536222_+	tartronate semialdehyde reductase	NA	NA	NA	NA	NA
SQI20790.1|536319_537465_+	Glycerate-2- kinase	NA	W6LM47	Streptococcus_phage	40.9	4.1e-48
SQI20792.1|538704_539199_+	TDC operon transcriptional activator	NA	NA	NA	NA	NA
SQI20795.1|539174_539642_+	TDC operon transcriptional activator	NA	NA	NA	NA	NA
SQI20797.1|539737_540079_+	catabolic threonine dehydratase	NA	NA	NA	NA	NA
SQI20817.1|540108_540726_+	catabolic threonine dehydratase	NA	NA	NA	NA	NA
SQI20818.1|540746_541451_+	threonine/serine transporter	NA	NA	NA	NA	NA
SQI20819.1|541440_541980_+	threonine/serine transporter	NA	NA	NA	NA	NA
SQI20820.1|541966_542713_+	propionate/acetate kinase	NA	NA	NA	NA	NA
SQI20821.1|542654_543314_+	propionate/acetate kinase	NA	NA	NA	NA	NA
SQI20822.1|543393_545688_+	formate acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	40.7	2.4e-156
SQI20823.1|545757_547122_+	L-serine dehydratase	NA	NA	NA	NA	NA
SQI20824.1|547499_548768_+	membrane protein	NA	NA	NA	NA	NA
SQI20825.1|548793_550104_+	Inner membrane protein	NA	NA	NA	NA	NA
SQI20826.1|550178_550343_-	Uncharacterized protein YhaL	NA	NA	NA	NA	NA
SQI20827.1|550366_551068_-	Pirin-like protein YhaK	NA	NA	NA	NA	NA
SQI20828.1|551172_552069_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQI20829.1|552105_552471_-	Inner membrane protein YhaH	NA	NA	NA	NA	NA
SQI20830.1|552655_552922_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQI20831.1|552957_553458_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	35.0	8.1e-17
>prophage 3
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	681540	711432	4584925	integrase,transposase	Bacteriophage(33.33%)	31	693898:693946	711646:711694
SQI21029.1|681540_681714_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI21030.1|682071_683127_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21031.1|683195_685517_+	Uncharacterised protein	NA	A0A1W5K0N1	Bacteriophage	31.1	7.0e-71
SQI21032.1|685578_687093_+	YD repeat (two copies)	NA	B6SD27	Bacteriophage	32.4	1.0e-67
SQI21033.1|687148_688372_+	RHS repeat-associated core domain	NA	A0A1W5K0N1	Bacteriophage	38.6	2.9e-28
SQI21034.1|688576_688900_+|transposase	transposase insN	transposase	Q716C1	Shigella_phage	94.1	1.1e-35
SQI21035.1|689061_689313_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21036.1|689888_690146_+	Antitoxin PemI	NA	NA	NA	NA	NA
SQI21037.1|690146_690479_+	mRNA interferase PemK	NA	NA	NA	NA	NA
SQI21038.1|691348_691924_+	DNA-binding prophage protein	NA	NA	NA	NA	NA
SQI21039.1|692476_692572_-|integrase	integrase (fragment)	integrase	NA	NA	NA	NA
SQI21040.1|692594_693146_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	44.4	5.9e-29
SQI21041.1|693142_693736_-|integrase	bacteriophage integrase	integrase	Q7M297	Enterobacteria_phage	35.4	3.3e-25
693898:693946	attL	TGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCC	NA	NA	NA	NA
SQI21042.1|694002_694878_+	Chromosome partitioning protein	NA	NA	NA	NA	NA
SQI21043.1|694874_695267_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21044.1|695259_696612_+	DNA helicase	NA	A0A1B0VG30	Salmonella_phage	56.6	5.2e-127
SQI21045.1|696601_698221_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
SQI21046.1|698217_698328_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21047.1|698324_698849_+	Protein of uncharacterised function (DUF2857)	NA	NA	NA	NA	NA
SQI21048.1|698867_699593_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21049.1|699698_700055_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21050.1|700120_701020_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21051.1|701242_701995_+	integrating conjugative element protein	NA	NA	NA	NA	NA
SQI21052.1|701981_702545_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21053.1|702541_704545_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.9	2.3e-38
SQI21054.1|704865_705591_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21055.1|707780_708119_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI21056.1|708378_709113_+	Antirestriction protein	NA	A0A1V0EBY3	Caulobacter_phage	40.8	8.2e-42
SQI21057.1|709196_709799_+	Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyl transferase (E2) component-related enzyme	NA	NA	NA	NA	NA
SQI21058.1|709782_710460_+	Protein of uncharacterised function (DUF1528)	NA	NA	NA	NA	NA
SQI21059.1|710913_711432_+|integrase	probable phage integrase	integrase	NA	NA	NA	NA
711646:711694	attR	TGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCC	NA	NA	NA	NA
>prophage 4
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1133393	1140688	4584925	tail	Salmonella_phage(66.67%)	7	NA	NA
SQI22207.1|1133393_1133603_-	putative bacteriophage protein	NA	H6WRW9	Salmonella_phage	70.6	1.1e-12
SQI22208.1|1133665_1134184_+	Uncharacterised protein	NA	A0A0M3ULD8	Salmonella_phage	76.9	2.7e-63
SQI22209.1|1134186_1134312_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI22210.1|1134298_1134532_+|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	65.0	6.6e-22
SQI22211.1|1135570_1135969_-|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	77.0	9.6e-21
SQI22212.1|1136220_1138209_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	83.2	8.4e-65
SQI22213.1|1138888_1140688_+	GTP-binding protein LepA	NA	A0A2K9L6L3	Tupanvirus	41.2	1.2e-22
>prophage 5
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1354211	1365154	4584925	tail	Salmonella_phage(50.0%)	16	NA	NA
SQI22562.1|1354211_1354412_-	Gene 18 protein	NA	K7P7V0	Enterobacteria_phage	74.2	1.8e-23
SQI22563.1|1354474_1354717_-	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	94.9	2.9e-36
SQI22564.1|1354719_1355613_-	putative DNA methylase	NA	A0A0M4R347	Salmonella_phage	91.1	4.2e-149
SQI22565.1|1355673_1356972_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1B0V7P0	Salmonella_phage	49.8	1.7e-111
SQI22566.1|1356968_1357472_-	putative phage-type endonuclease	NA	A0A0S2SY31	Pseudomonas_phage	55.4	9.5e-42
SQI22567.1|1357692_1358442_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	98.8	9.0e-137
SQI22568.1|1358452_1358800_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	98.3	2.5e-57
SQI22569.1|1358849_1359806_+	phosphohydrolase	NA	B7SYG0	Stenotrophomonas_phage	43.4	9.6e-67
SQI22570.1|1359802_1359961_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI22571.1|1359964_1360357_+	Gp37	NA	NA	NA	NA	NA
SQI22572.1|1360508_1360736_+|tail	Phage tail fiber	tail	A0A1S6KZZ8	Salmonella_phage	66.7	3.6e-25
SQI22573.1|1360738_1361275_+|tail	Phage tail fiber	tail	A0A1S6KZZ1	Salmonella_phage	86.9	3.1e-83
SQI22574.1|1361326_1362457_-	acetyltransferase family protein	NA	A0A2H4JA46	uncultured_Caudovirales_phage	34.4	8.4e-38
SQI22575.1|1362745_1363903_-	Tyrosine recombinase xerD	NA	A5VW56	Enterobacteria_phage	98.4	7.7e-220
SQI22576.1|1364214_1364730_-	putative transport	NA	E7DYY8	Enterobacteria_phage	88.1	7.2e-69
SQI22577.1|1364773_1365154_-	putative transport	NA	E7DYY8	Enterobacteria_phage	71.4	1.7e-27
>prophage 6
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1681101	1692169	4584925		Enterobacteria_phage(33.33%)	12	NA	NA
SQI22978.1|1681101_1681362_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	39.3	8.2e-05
SQI22980.1|1681315_1681753_+	Colanic acid biosynthesis protein wcaM	NA	NA	NA	NA	NA
SQI22981.1|1681970_1682822_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	40.1	1.3e-38
SQI22983.1|1683195_1684281_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	51.2	9.1e-98
SQI22985.1|1684280_1685180_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.7	1.0e-30
SQI22986.1|1685232_1686111_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.1	1.9e-106
SQI22988.1|1686112_1686658_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.1	1.3e-49
SQI22991.1|1686688_1687963_+	Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase	NA	A7IWZ0	Paramecium_bursaria_Chlorella_virus	27.2	2.6e-27
SQI22992.1|1687992_1688157_+	Vi polysaccharide biosynthesis protein, epimerase	NA	NA	NA	NA	NA
SQI22994.1|1688228_1689014_+	Vi polysaccharide biosynthesis protein, epimerase	NA	A0A2K9L0I7	Tupanvirus	47.9	4.0e-63
SQI22995.1|1689128_1690334_+	Polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SQI22997.1|1690321_1692169_+	asparagine synthetase B	NA	A0A1V0SGM7	Hokovirus	27.5	2.1e-33
>prophage 7
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1764458	1812204	4584925	integrase,tail,transposase	Salmonella_phage(18.75%)	44	1766560:1766573	1810102:1810198
SQI23175.1|1764458_1764797_-|transposase	transposase IS1113	transposase	NA	NA	NA	NA
SQI23177.1|1764796_1765036_-|integrase	CP4-like integrase	integrase	NA	NA	NA	NA
SQI23179.1|1765061_1765532_-|integrase	CP4-like integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.7	2.0e-25
SQI23180.1|1765978_1766737_+	putative inner membrane protein	NA	NA	NA	NA	NA
1766560:1766573	attL	TATCATCAGCAGCA	NA	NA	NA	NA
SQI23182.1|1766760_1767408_+	putative inner membrane protein	NA	NA	NA	NA	NA
1766560:1766573	attL	TATCATCAGCAGCA	NA	NA	NA	NA
SQI23184.1|1767767_1768397_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	8.3e-35
SQI23185.1|1768452_1769028_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	43.6	4.3e-30
SQI23186.1|1769233_1769548_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23187.1|1769425_1769872_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23188.1|1770255_1770693_+|transposase	transposase IS66	transposase	NA	NA	NA	NA
1770529:1770542	attR	TATCATCAGCAGCA	NA	NA	NA	NA
SQI23189.1|1770774_1771467_+|transposase	transposase IS66	transposase	A0A218MNE7	uncultured_virus	41.6	1.6e-42
1770529:1770542	attR	TATCATCAGCAGCA	NA	NA	NA	NA
SQI23190.1|1771790_1772546_-	DNA-binding prophage protein	NA	NA	NA	NA	NA
SQI23191.1|1773064_1773367_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
SQI23192.1|1773371_1773725_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
SQI23193.1|1774221_1774443_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	67.2	7.2e-18
SQI23194.1|1774439_1774907_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23195.1|1775550_1776561_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
SQI23196.1|1776845_1778081_+	DNA-cytosine methyltransferase	NA	I6NLI4	Burkholderia_phage	49.3	2.6e-96
SQI23197.1|1778077_1780627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23198.1|1780650_1782411_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23199.1|1782400_1782748_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23200.1|1782767_1784474_+	helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	34.6	1.8e-07
SQI23201.1|1784473_1786303_+	helicase	NA	NA	NA	NA	NA
SQI23202.1|1786283_1788605_+	helicase	NA	NA	NA	NA	NA
SQI23203.1|1788674_1789082_+	Fis family transcriptional regulator	NA	I6NSG0	Burkholderia_phage	54.3	3.1e-35
SQI23204.1|1790225_1790888_-	AMP nucleosidase	NA	NA	NA	NA	NA
SQI23205.1|1791024_1791369_-	AMP nucleosidase	NA	NA	NA	NA	NA
SQI23206.1|1791547_1791844_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23207.1|1792038_1792782_-|integrase	integrase	integrase	H6WRW7	Salmonella_phage	24.0	3.5e-08
SQI23208.1|1793806_1795303_-	dipeptidase	NA	NA	NA	NA	NA
SQI23209.1|1796252_1796495_-	Mobile element protein	NA	NA	NA	NA	NA
SQI23210.1|1796505_1796640_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI23211.1|1797849_1798827_+	spermidine/putrescine-binding periplasmic protein	NA	NA	NA	NA	NA
SQI23212.1|1798840_1800547_+	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
SQI23213.1|1800534_1801560_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-27
SQI23214.1|1801912_1804270_-	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	90.9	4.0e-74
SQI23215.1|1804451_1804727_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI23216.1|1805126_1805501_+	type III secretion protein GogB	NA	Q9MBM1	Phage_Gifsy-1	91.2	1.1e-55
SQI23217.1|1806634_1807405_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YN96	Rhizobium_phage	27.2	6.6e-10
SQI23218.1|1807784_1808024_-|tail	phage tail fiber	tail	A0A0M4RTP2	Salmonella_phage	83.5	5.9e-34
SQI23219.1|1808738_1809047_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	70.3	7.7e-18
SQI23220.1|1811043_1811343_+|transposase	IS3 transposase	transposase	NA	NA	NA	NA
SQI23221.1|1811339_1811546_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI23222.1|1811733_1812204_+|transposase	IS3 transposase	transposase	U5P429	Shigella_phage	54.3	2.2e-40
>prophage 8
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1856323	1886997	4584925	holin,tail,integrase	Salmonella_phage(47.37%)	55	1854572:1854586	1857362:1857376
1854572:1854586	attL	TGATGCTAACGGGCC	NA	NA	NA	NA
SQI23334.1|1856323_1857334_-|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	63.7	4.3e-126
SQI23335.1|1857333_1857561_-	phage-like protein	NA	K7PHA0	Enterobacterial_phage	46.7	5.1e-11
1857362:1857376	attR	GGCCCGTTAGCATCA	NA	NA	NA	NA
SQI23336.1|1857699_1857927_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23337.1|1857926_1858391_-	ATPase involved in DNA repair	NA	A0A1B5FPC7	Escherichia_phage	52.2	1.5e-41
SQI23338.1|1858431_1858671_-	putative bacteriophage protein	NA	H6WRW9	Salmonella_phage	94.9	3.7e-36
SQI23339.1|1858667_1859366_-	DNA adenine methylase	NA	S5M7S1	Escherichia_phage	72.5	3.6e-87
SQI23340.1|1859362_1859986_-	putative phage-type endonuclease	NA	S0A2A9	Cellulophaga_phage	48.1	3.9e-45
SQI23341.1|1859982_1860486_-	Uncharacterised protein	NA	A0A0F7L7F5	uncultured_marine_virus	31.5	8.4e-14
SQI23342.1|1860491_1860788_-	Host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	95.9	6.4e-46
SQI23343.1|1860871_1861144_-	Uncharacterised protein	NA	S4TU79	Salmonella_phage	61.1	6.1e-27
SQI23345.1|1861154_1861352_-	putative secreted protein	NA	NA	NA	NA	NA
SQI23346.1|1861548_1861638_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23348.1|1861885_1862122_+	bacteriophage protein	NA	K7P7I0	Enterobacteria_phage	66.2	3.2e-16
SQI23349.1|1862162_1862969_-	phage-like protein	NA	NA	NA	NA	NA
SQI23350.1|1862965_1863814_-	phage-like protein	NA	NA	NA	NA	NA
SQI23352.1|1863985_1864372_-	DNA-binding protein	NA	A0A0M4R5D1	Salmonella_phage	91.3	6.2e-57
SQI23354.1|1864475_1864712_+	phage regulatory protein	NA	A0A0M4QX15	Salmonella_phage	100.0	2.3e-38
SQI23356.1|1864731_1865052_+	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
SQI23357.1|1865143_1865527_+	phage replication protein O	NA	A0A0M5M7Y1	Salmonella_phage	97.6	9.1e-69
SQI23360.1|1865750_1866050_+	phage replication protein O	NA	A0A0U2C0J4	Salmonella_phage	100.0	1.5e-55
SQI23362.1|1866046_1866739_+	replication protein P	NA	G8C7U6	Escherichia_phage	60.2	1.3e-78
SQI23365.1|1866752_1867235_+	Eaa1	NA	G9L6G6	Escherichia_phage	65.4	2.1e-38
SQI23366.1|1867231_1867462_+	phage protein	NA	Q8HAA4	Salmonella_phage	85.3	4.7e-28
SQI23368.1|1867458_1867647_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23369.1|1867643_1868342_+	Ead protein	NA	A0A2H4FRZ0	Salmonella_phage	76.5	1.7e-57
SQI23370.1|1868338_1868533_+	Uncharacterised protein	NA	A0A075B8E3	Enterobacteria_phage	96.9	2.8e-26
SQI23372.1|1868536_1868926_+	Eaa protein	NA	A0A1U9HZ41	Salmonella_phage	93.0	1.2e-15
SQI23373.1|1868922_1869447_+	phage protein	NA	S4TSR6	Salmonella_phage	84.7	5.5e-32
SQI23375.1|1869672_1869906_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
SQI23376.1|1870305_1870908_+	bacteriophage protein	NA	A0A0M4QX23	Salmonella_phage	97.5	1.2e-107
SQI23377.1|1871115_1871727_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.5	1.3e-90
SQI23379.1|1871723_1871870_+	prophage protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
SQI23380.1|1871859_1872657_+	molecular chaperone	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
SQI23381.1|1873061_1873403_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	1.3e-45
SQI23383.1|1873405_1874008_+	Phage endolysin	NA	Q858F0	Salmonella_phage	82.0	2.9e-93
SQI23384.1|1874029_1874557_+|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQI23386.1|1874667_1875177_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23387.1|1875237_1876209_+	Terminase small subunit	NA	I6NV32	Burkholderia_virus	32.8	1.0e-23
SQI23389.1|1876198_1877470_+	Uncharacterised protein	NA	A0A0U2JTW9	Escherichia_phage	38.8	6.1e-85
SQI23390.1|1877469_1878537_+	Protein of uncharacterised function (DUF1073)	NA	A0A0U2S5X9	Escherichia_phage	40.4	7.9e-54
SQI23392.1|1878545_1878899_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23393.1|1878870_1879746_+	Uncharacterised protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	6.3e-57
SQI23394.1|1879746_1881054_+	nudix hydrolase	NA	Q6UJ14	Burkholderia_virus	49.5	6.4e-21
SQI23396.1|1881050_1881320_+	nudix hydrolase	NA	NA	NA	NA	NA
SQI23397.1|1881340_1881634_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23398.1|1881606_1882212_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23400.1|1882229_1882721_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI23401.1|1882738_1882981_+	Uncharacterised protein	NA	A0A0U2QQI2	Escherichia_phage	49.3	4.8e-07
SQI23403.1|1882959_1883259_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23404.1|1883324_1883810_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23406.1|1883822_1884248_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23407.1|1884244_1884676_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23409.1|1884659_1885043_+	Uncharacterised protein	NA	A0A0U2SH76	Escherichia_phage	42.3	3.0e-19
SQI23410.1|1885093_1885597_+	Uncharacterised protein	NA	A0A0U2SH76	Escherichia_phage	38.1	3.9e-19
SQI23411.1|1885602_1886997_+	Uncharacterised protein	NA	A0A0U2KD19	Escherichia_phage	36.6	7.9e-70
>prophage 9
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1893272	1899368	4584925	tail	Escherichia_phage(62.5%)	11	NA	NA
SQI23436.1|1893272_1893914_+	Uncharacterized homolog of phage Mu protein gp47	NA	A0A0U2RJZ0	Escherichia_phage	62.2	6.2e-62
SQI23437.1|1893868_1894432_+	Uncharacterised protein	NA	A0A0U2RJZ0	Escherichia_phage	66.5	9.6e-67
SQI23438.1|1894482_1894629_+	Uncharacterised protein	NA	A0A0U2RK03	Escherichia_phage	62.5	1.5e-11
SQI23439.1|1894622_1895108_+	Uncharacterised protein	NA	A0A0U2RK03	Escherichia_phage	72.3	5.2e-69
SQI23440.1|1895104_1895764_+|tail	side tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	63.4	9.2e-69
SQI23442.1|1895747_1896059_+|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	80.0	6.1e-15
SQI23443.1|1896055_1896925_+	DNA recombinase-like protein	NA	E5G6P0	Salmonella_phage	82.5	2.9e-46
SQI23444.1|1897922_1898441_-	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI23445.1|1898499_1898760_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23446.1|1898797_1898974_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23447.1|1899173_1899368_-	Uncharacterised protein	NA	A0A0M3ULK3	Salmonella_phage	92.1	2.5e-27
>prophage 10
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	1973109	2013796	4584925	tail,protease	Moraxella_phage(28.57%)	49	NA	NA
SQI23744.1|1973109_1973280_+|tail	bacteriophage tail fiber assembly protein	tail	NA	NA	NA	NA
SQI23745.1|1973398_1975756_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.8	1.2e-70
SQI23746.1|1976555_1976687_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23748.1|1976813_1977812_-	Putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI23750.1|1977954_1978431_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI23751.1|1978942_1979665_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQI23753.1|1979946_1980108_+	membrane protein	NA	NA	NA	NA	NA
SQI23754.1|1980335_1980986_+	serine/threonine protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.8	3.4e-60
SQI23756.1|1981014_1981206_-	putative secreted protein	NA	NA	NA	NA	NA
SQI23757.1|1981316_1981556_-	conserved domain protein	NA	NA	NA	NA	NA
SQI23758.1|1981670_1983212_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQI23760.1|1983187_1985821_-	mce-related protein	NA	NA	NA	NA	NA
SQI23762.1|1985789_1986974_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQI23765.1|1987128_1987698_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQI23768.1|1987795_1988482_+	ProP effector	NA	NA	NA	NA	NA
SQI23770.1|1988501_1989329_+|protease	Tail-specific protease precursor	protease	NA	NA	NA	NA
SQI23772.1|1989330_1990065_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	41.6	1.2e-37
SQI23774.1|1990087_1990243_+|protease	Tail-specific protease precursor	protease	NA	NA	NA	NA
SQI23776.1|1990265_1990550_+|protease	Tail-specific protease precursor	protease	NA	NA	NA	NA
SQI23778.1|1990743_1991625_+	heat shock protein	NA	NA	NA	NA	NA
SQI23780.1|1991713_1993045_-	export protein	NA	NA	NA	NA	NA
SQI23782.1|1993220_1994012_+	transcriptional regulator KdgR	NA	NA	NA	NA	NA
SQI23784.1|1994221_1994461_-	putative exported protein	NA	NA	NA	NA	NA
SQI23786.1|1994618_1994762_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI23788.1|1994832_1995120_+	putative exported protein	NA	NA	NA	NA	NA
SQI23791.1|1996356_1997262_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQI23793.1|1997460_1998099_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQI23795.1|1998164_1998974_+	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
SQI23799.1|1998970_1999336_-	membrane protein YebN	NA	NA	NA	NA	NA
SQI23804.1|1999388_1999535_-	membrane protein YebN	NA	NA	NA	NA	NA
SQI23805.1|1999945_2000404_-	membrane protein	NA	NA	NA	NA	NA
SQI23810.1|2000462_2000717_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
SQI23813.1|2000783_2000981_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
SQI23816.1|2000980_2001313_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
SQI23822.1|2001325_2002126_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
SQI23823.1|2002179_2003145_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
SQI23826.1|2003616_2004480_+	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	44.0	1.2e-39
SQI23829.1|2004434_2005175_+	Magnesium and cobalt efflux protein CorC	NA	NA	NA	NA	NA
SQI23832.1|2005204_2006044_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
SQI23835.1|2006049_2006313_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
SQI23858.1|2006930_2008313_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
SQI23864.1|2008567_2008942_-	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
SQI23865.1|2009147_2010512_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	35.0	2.3e-45
SQI23868.1|2010592_2010772_+	conserved domain protein	NA	NA	NA	NA	NA
SQI23869.1|2010777_2011122_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
SQI23877.1|2011251_2012142_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	34.7	2.7e-39
SQI23913.1|2012107_2012857_+	ATP-dependent helicase	NA	NA	NA	NA	NA
SQI23918.1|2012829_2013162_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	45.0	1.0e-20
SQI23920.1|2013340_2013796_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 11
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2123524	2158609	4584925	tRNA,protease,transposase	Shigella_phage(50.0%)	43	NA	NA
SQI24328.1|2123524_2125021_+|tRNA	S-adenosylmethionine tRNA ribosyltransferase	tRNA	NA	NA	NA	NA
SQI24330.1|2125051_2125462_-|transposase	IS3 transposase	transposase	Q716C2	Shigella_phage	87.1	2.7e-58
SQI24332.1|2125836_2126088_-|transposase	transposase insN	transposase	Q716C1	Shigella_phage	93.1	2.1e-29
SQI24341.1|2126500_2126722_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI24343.1|2126867_2127164_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI24346.1|2127373_2127517_+	pseudouridine synthase	NA	NA	NA	NA	NA
SQI24348.1|2127513_2127936_+	pseudouridine synthase	NA	NA	NA	NA	NA
SQI24582.1|2127917_2128247_+	pseudouridine synthase	NA	NA	NA	NA	NA
SQI24584.1|2128367_2129690_-	oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	22.2	3.4e-06
SQI24666.1|2129933_2130974_+|protease	putative protease sohB	protease	NA	NA	NA	NA
SQI24667.1|2131137_2131389_-	Protein yciN	NA	NA	NA	NA	NA
SQI24669.1|2131997_2134385_+	DNA topoisomerase 1	NA	A0A2K9L5F8	Tupanvirus	35.1	1.1e-79
SQI24670.1|2134595_2135072_+	CysB family transcriptional regulator	NA	NA	NA	NA	NA
SQI24672.1|2135053_2135569_+	CysB family transcriptional regulator	NA	NA	NA	NA	NA
SQI24674.1|2135862_2135991_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI24676.1|2136447_2137434_+	aconitate hydratase 1	NA	NA	NA	NA	NA
SQI24678.1|2137424_2137604_+	aconitate hydratase 1	NA	NA	NA	NA	NA
SQI24681.1|2138256_2139120_+	aconitate hydratase 1	NA	NA	NA	NA	NA
SQI24682.1|2139176_2139767_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.4	2.9e-42
SQI24684.1|2139962_2140538_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA	NA
SQI24687.1|2140555_2140729_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA	NA
SQI24689.1|2140878_2141187_+	Inner membrane protein yciS	NA	NA	NA	NA	NA
SQI24691.1|2141193_2142363_+	Heat shock (predicted periplasmic) proteinYciM precursor	NA	NA	NA	NA	NA
SQI24693.1|2142554_2143292_+	Orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQI24694.1|2143291_2143618_+	translation initiation factor Sui1	NA	NA	NA	NA	NA
SQI24696.1|2143715_2143955_-	osmotically inducible lipoprotein B	NA	NA	NA	NA	NA
SQI24698.1|2144213_2144771_-	regulatory protein	NA	NA	NA	NA	NA
SQI24700.1|2144760_2144967_-	regulatory protein	NA	NA	NA	NA	NA
SQI24702.1|2145055_2145235_-	conserved domain protein	NA	NA	NA	NA	NA
SQI24703.1|2145645_2146128_-	RNase II stability modulator	NA	NA	NA	NA	NA
SQI24705.1|2146385_2146808_-	exoribonuclease II	NA	NA	NA	NA	NA
SQI24707.1|2146804_2148319_-	exoribonuclease II	NA	NA	NA	NA	NA
SQI24709.1|2148759_2149548_-	enoyl-(acyl carrier protein) reductase	NA	NA	NA	NA	NA
SQI24711.1|2150141_2150873_+	putative inner membrane protein	NA	NA	NA	NA	NA
SQI24713.1|2150971_2151610_+	Secreted effector kinase steC	NA	NA	NA	NA	NA
SQI24715.1|2152074_2152782_+	Cyclic di-GMP phosphodiesterase YhjH	NA	NA	NA	NA	NA
SQI24718.1|2152797_2153604_-	peptide transport system ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	28.2	3.6e-14
SQI24719.1|2153605_2154598_-	Peptide transport system ATP-binding protein sapD	NA	NA	NA	NA	NA
SQI24721.1|2154597_2155155_-	peptide transporter permease SapC	NA	NA	NA	NA	NA
SQI24723.1|2155879_2156086_-|transposase	transposase	transposase	Q716C2	Shigella_phage	97.0	1.6e-32
SQI24725.1|2156204_2156507_-|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	transposase	Q716C2	Shigella_phage	92.0	3.7e-49
SQI24727.1|2156784_2158125_-	Transposase	NA	Q9JMN8	Wolbachia_phage	47.0	4.5e-115
SQI24728.1|2158357_2158609_-|transposase	transposase insN	transposase	Q716C1	Shigella_phage	94.4	1.6e-29
>prophage 12
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2351455	2362322	4584925		Escherichia_phage(87.5%)	11	NA	NA
SQI24962.1|2351455_2352349_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	48.0	6.2e-60
SQI24963.1|2352458_2353892_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	49.7	4.8e-131
SQI24964.1|2354017_2355421_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	50.1	7.6e-105
SQI24965.1|2355362_2356427_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	45.7	7.3e-84
SQI24966.1|2356437_2357055_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.1	2.8e-75
SQI24967.1|2357056_2357914_+	dimethyl sulfoxide reductase subunit H	NA	A0A077SK59	Escherichia_phage	34.3	8.4e-22
SQI24968.1|2357956_2358571_+	Anaerobic dimethyl sulfoxide reductasechaperone DmsD	NA	A0A077SLS7	Escherichia_phage	37.3	9.6e-28
SQI24969.1|2358875_2359586_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
SQI24970.1|2359614_2360517_+	ABC transporter periplasmic binding protein	NA	NA	NA	NA	NA
SQI24971.1|2360526_2361174_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
SQI24972.1|2361173_2362322_+	ABC transporter ATP/GTP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	1.1e-24
>prophage 13
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2495999	2505362	4584925	tRNA,integrase	Escherichia_phage(33.33%)	16	2489156:2489167	2506098:2506109
2489156:2489167	attL	GCTGAACGAGTC	NA	NA	NA	NA
SQI25132.1|2495999_2496983_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
SQI25133.1|2497285_2497642_-	50S ribosomal subunit protein L20	NA	NA	NA	NA	NA
SQI25134.1|2497692_2497890_-	50S ribosomal subunit protein L35	NA	NA	NA	NA	NA
SQI25135.1|2497985_2498420_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
SQI25136.1|2498531_2499920_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	41.0	6.2e-107
SQI25137.1|2499978_2500461_-|tRNA	threonyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQI25138.1|2500825_2501116_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	89.6	1.4e-45
SQI25139.1|2501248_2501581_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI25140.1|2501433_2502093_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	86.7	2.0e-92
SQI25141.1|2502095_2502515_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	58.1	7.2e-35
SQI25142.1|2502739_2502895_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI25143.1|2502933_2503203_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI25144.1|2503275_2504418_+	lipopolysaccharide 1,2-N-acetylglucosaminetransferase	NA	NA	NA	NA	NA
SQI25145.1|2504645_2504792_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	85.7	7.8e-13
SQI25146.1|2504830_2504986_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	79.2	1.3e-13
SQI25147.1|2504936_2505362_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	73.6	4.6e-45
2506098:2506109	attR	GCTGAACGAGTC	NA	NA	NA	NA
>prophage 14
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2761755	2766460	4584925		uncultured_Caudovirales_phage(100.0%)	7	NA	NA
SQI25784.1|2761755_2762166_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	64.4	2.3e-41
SQI25785.1|2762178_2762646_-	arylsulfatase	NA	A0A2H4J144	uncultured_Caudovirales_phage	67.1	2.0e-54
SQI25786.1|2762812_2763169_-	arylsulfatase	NA	A0A2H4J144	uncultured_Caudovirales_phage	76.9	5.5e-36
SQI25787.1|2763189_2763528_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	61.2	9.0e-20
SQI25788.1|2763725_2763944_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI25791.1|2765801_2766146_+	Putative TEGT family carrier/transport protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	48.8	1.6e-11
SQI25792.1|2766103_2766460_+	Putative TEGT family carrier/transport protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	42.2	1.7e-13
>prophage 15
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2844163	2859056	4584925	tRNA	Escherichia_phage(25.0%)	12	NA	NA
SQI25917.1|2844163_2844781_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	1.2e-75
SQI25918.1|2844791_2847236_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.4	3.5e-222
SQI25919.1|2847471_2848764_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.2	2.5e-94
SQI25920.1|2849015_2849222_-	Holliday junction DNA helicase	NA	NA	NA	NA	NA
SQI25921.1|2849178_2849829_-	Holliday junction DNA helicase	NA	NA	NA	NA	NA
SQI25922.1|2849776_2850361_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	50.0	1.1e-38
SQI25923.1|2850370_2850982_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQI25924.1|2851114_2851465_-	DNA translocase FtsK	NA	J7I0T4	Pseudomonas_phage	50.6	7.6e-14
SQI25925.1|2851430_2855030_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	1.5e-83
SQI25926.1|2855164_2855659_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SQI25927.1|2856205_2857174_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	45.5	1.7e-63
SQI25928.1|2857289_2859056_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	NA	W8CYL7	Bacillus_phage	25.3	7.0e-23
>prophage 16
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	2865294	2871683	4584925	protease	Agrobacterium_phage(16.67%)	6	NA	NA
SQI25937.1|2865294_2866785_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	47.0	3.4e-127
SQI25938.1|2866781_2867573_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2I7SAX5	Vibrio_phage	34.2	2.0e-30
SQI25939.1|2867603_2867924_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
SQI25940.1|2868247_2868469_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQI25941.1|2868621_2870568_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	41.4	2.4e-40
SQI25942.1|2870564_2871683_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	2.4e-08
>prophage 17
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	3461348	3472531	4584925	capsid,integrase	Enterobacteria_phage(88.89%)	12	3461053:3461068	3472700:3472715
3461053:3461068	attL	CGATAATAGGAGTCGA	NA	NA	NA	NA
SQI26983.1|3461348_3463451_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	74.8	0.0e+00
SQI26984.1|3463466_3463787_-	putative prophage protein	NA	NA	NA	NA	NA
SQI26985.1|3463790_3464045_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI26986.1|3464117_3464567_-	Uncharacterised protein	NA	Q7M298	Enterobacteria_phage	74.3	5.1e-47
SQI26987.1|3464725_3464860_-	prophage derepression protein	NA	Q7M2A0	Enterobacteria_phage	63.4	7.1e-05
SQI26988.1|3465451_3465718_-	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	69.3	4.9e-29
SQI26989.1|3466266_3467004_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	64.1	3.4e-80
SQI26990.1|3467000_3467261_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	67.9	1.4e-25
SQI26991.1|3467260_3467677_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	60.0	3.0e-33
SQI26992.1|3468037_3469660_-	DNA helicase II	NA	S5MMD7	Bacillus_phage	24.0	3.1e-09
SQI26993.1|3469656_3471360_-	recombination protein F	NA	NA	NA	NA	NA
SQI26994.1|3471349_3472531_-|integrase	site-specific recombinase, phage integrase family protein	integrase	Q7M297	Enterobacteria_phage	60.8	1.3e-142
3472700:3472715	attR	CGATAATAGGAGTCGA	NA	NA	NA	NA
>prophage 18
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	3874491	3923808	4584925	tRNA,integrase,transposase	Shigella_phage(27.27%)	61	3890081:3890106	3928424:3928449
SQI27470.1|3874491_3874950_+|tRNA	tRNA proofreading protein	tRNA	NA	NA	NA	NA
SQI27471.1|3874966_3875641_-	DNA-binding transcriptional activator BglJ	NA	NA	NA	NA	NA
SQI27472.1|3875589_3876327_-	regulatory protein	NA	NA	NA	NA	NA
SQI27473.1|3877031_3877808_+	membrane protein	NA	NA	NA	NA	NA
SQI27474.1|3877798_3878272_+	putative inner membrane protein	NA	NA	NA	NA	NA
SQI27475.1|3878365_3878905_+	Primosomal protein 1 Primosomal protein I	NA	T1SA92	Salmonella_phage	65.6	1.3e-28
SQI27476.1|3878907_3879081_+	DNA replication protein	NA	NA	NA	NA	NA
SQI27477.1|3879058_3879646_+	DNA replication protein	NA	V5UQI5	Shigella_phage	55.6	1.3e-53
SQI27478.1|3879947_3882239_+	phosphoglycerol transferase	NA	NA	NA	NA	NA
SQI27479.1|3882337_3883348_-	putative glucosamine-fructose-6-phosphate aminotransferase	NA	NA	NA	NA	NA
SQI27480.1|3883365_3884427_-	phosphosugar isomerase	NA	J3IZE6	Acanthamoeba_polyphaga_lentillevirus	24.8	2.4e-10
SQI27481.1|3884439_3885156_-	PTS system IId component	NA	NA	NA	NA	NA
SQI27482.1|3885163_3886045_-	PTS system, IIc component	NA	NA	NA	NA	NA
SQI27483.1|3886070_3886532_-	PTS system, IIb component	NA	NA	NA	NA	NA
SQI27484.1|3886546_3886969_-	PTS permease	NA	NA	NA	NA	NA
SQI27485.1|3887069_3889835_-	transcriptional regulator	NA	NA	NA	NA	NA
3890081:3890106	attL	TGTAGGCCGGATAAGGCGTTTACGCC	NA	NA	NA	NA
SQI27486.1|3890183_3891545_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	65.5	6.9e-10
SQI27487.1|3891550_3891844_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
SQI27488.1|3892210_3893896_+	carbon starvation protein	NA	NA	NA	NA	NA
SQI27489.1|3893892_3894360_+	carbon starvation protein	NA	NA	NA	NA	NA
SQI27490.1|3894468_3894672_+	putative small protein yjiX	NA	NA	NA	NA	NA
SQI27491.1|3894682_3895552_+	Putative GTPases (G3E family)	NA	NA	NA	NA	NA
SQI27492.1|3895674_3895872_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQI27493.1|3896201_3896405_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI27494.1|3896533_3897178_+	lysE type translocator	NA	NA	NA	NA	NA
SQI27495.1|3897028_3897355_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI27496.1|3897588_3897807_+	transporter	NA	NA	NA	NA	NA
SQI27497.1|3897901_3898441_+	transporter	NA	NA	NA	NA	NA
SQI27498.1|3898587_3898752_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI27499.1|3899036_3899387_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQI27500.1|3899383_3899860_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQI27501.1|3900149_3900323_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQI27502.1|3900505_3900727_-	membrane protein	NA	NA	NA	NA	NA
SQI27503.1|3901212_3901371_-	Transposase	NA	NA	NA	NA	NA
SQI27504.1|3901932_3902343_+	sugar transport protein	NA	NA	NA	NA	NA
SQI27505.1|3902356_3902620_+	sugar transport protein	NA	NA	NA	NA	NA
SQI27506.1|3902631_3903174_+	sugar transport protein	NA	NA	NA	NA	NA
SQI27507.1|3903376_3904531_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI27508.1|3904737_3905922_+	transporter, major facilitator family	NA	NA	NA	NA	NA
SQI27509.1|3906615_3907287_+	transporter gate domain-containing protein	NA	NA	NA	NA	NA
SQI27510.1|3907283_3907457_+	membrane protein	NA	NA	NA	NA	NA
SQI27511.1|3907456_3908932_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
SQI27512.1|3909050_3910142_+	transcriptional activator	NA	NA	NA	NA	NA
SQI27513.1|3910104_3910668_-	aspartate racemase	NA	NA	NA	NA	NA
SQI27514.1|3910935_3911382_-	Hemolysin-coregulated protein (uncharacterized)	NA	NA	NA	NA	NA
SQI27515.1|3912524_3913250_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
SQI27516.1|3913648_3914314_+	dienelactone hydrolase	NA	NA	NA	NA	NA
SQI27517.1|3914330_3914699_-	Putative inner membrane or exported	NA	NA	NA	NA	NA
SQI27518.1|3915142_3916054_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI27519.1|3916427_3916610_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI27520.1|3916675_3917212_-|transposase	IS3 transposase	transposase	U5P429	Shigella_phage	54.0	3.4e-45
SQI27521.1|3917332_3917539_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI27522.1|3917535_3917835_-|transposase	IS3 transposase	transposase	NA	NA	NA	NA
SQI27523.1|3917954_3919223_+	type III restriction-modification system StyLTI enzyme mod	NA	Q1MVP0	Enterobacteria_phage	41.8	4.8e-74
SQI27524.1|3919285_3919585_+|transposase	IS3 transposase	transposase	NA	NA	NA	NA
SQI27525.1|3919581_3920448_+	Transposase for insertion sequence element IS904	NA	U5P429	Shigella_phage	43.4	1.7e-54
SQI27526.1|3920444_3920786_-	type III restriction-modification system StyLTI enzyme mod	NA	Q1MVP0	Enterobacteria_phage	88.0	6.9e-44
SQI27527.1|3920797_3921082_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI27528.1|3921278_3921575_-|integrase	phage integrase family site-specific recombinase	integrase	A0A1B0VMI6	Pseudomonas_phage	47.6	6.0e-12
SQI27529.1|3922149_3922443_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	43.5	2.9e-14
SQI27530.1|3923013_3923808_+	zinc-type alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	35.5	3.8e-37
3928424:3928449	attR	GGCGTAAACGCCTTATCCGGCCTACA	NA	NA	NA	NA
>prophage 19
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	3959111	3962398	4584925		uncultured_Caudovirales_phage(33.33%)	6	NA	NA
SQI27579.1|3959111_3959480_+	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2H4YEI7	Aeromonas_phage	40.2	1.4e-13
SQI27580.1|3959454_3960555_+	Anaerobic ribonucleoside-triphosphate reductase	NA	Q76Z50	Aeromonas_virus	70.9	3.9e-149
SQI27581.1|3960673_3961252_+	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	73.1	1.0e-84
SQI27582.1|3961407_3961872_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	K4F9T1	Cronobacter_phage	59.2	2.7e-51
SQI27583.1|3961881_3962166_-	RelE toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.0e-29
SQI27584.1|3962155_3962398_-	bifunctional antitoxin/transcriptional repressor RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	50.0	9.6e-16
>prophage 20
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	4086205	4090712	4584925		Escherichia_phage(100.0%)	6	NA	NA
SQI27735.1|4086205_4086478_-	Twin-arginine leader-binding protein DmsD	NA	A0A077SLS7	Escherichia_phage	71.9	3.8e-29
SQI27736.1|4086429_4086798_-	Twin-arginine leader-binding protein DmsD	NA	A0A077SLS7	Escherichia_phage	75.3	8.0e-38
SQI27737.1|4086873_4087647_-	dimethyl sulfoxide reductase subunit C	NA	A0A077SK59	Escherichia_phage	78.7	1.4e-100
SQI27738.1|4087799_4088258_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	88.1	8.6e-66
SQI27739.1|4088281_4089451_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	80.7	2.0e-191
SQI27740.1|4089428_4090712_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	80.7	3.3e-171
>prophage 21
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	4502843	4508955	4584925		Enterobacteria_phage(33.33%)	7	NA	NA
SQI28174.1|4502843_4503974_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	NA	A0A0F7LAY0	uncultured_marine_virus	42.5	1.5e-18
SQI28175.1|4503978_4504656_-	TDP-D-fucosamine acetyltransferase	NA	NA	NA	NA	NA
SQI28176.1|4504633_4504957_-	glucose-1-phosphate thymidylyltransferase	NA	A0A1D7XFC1	Escherichia_phage	63.4	4.1e-30
SQI28177.1|4505164_4505515_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	75.9	1.0e-42
SQI28178.1|4505543_4506611_-	UDP-N-acetylglucosamine epimerase	NA	I7HTA3	Enterobacteria_phage	53.1	1.4e-98
SQI28179.1|4506610_4507873_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1H3J6	Paramecium_bursaria_Chlorella_virus	27.4	3.1e-25
SQI28180.1|4507869_4508955_-	UDP-N-acetyl-D-glucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	31.9	2.4e-26
>prophage 22
LS483466	Salmonella enterica subsp. arizonae strain NCTC7307 genome assembly, chromosome: 1	4584925	4565843	4573520	4584925		Paramecium_bursaria_Chlorella_virus(33.33%)	9	NA	NA
SQI28238.1|4565843_4567211_+	UDP-N-acetylglucosamine pyrophosphorylase	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	37.0	4.4e-33
SQI28239.1|4567508_4568303_+	Glucosamine--fructose-6-phosphateamino transferase [isomerizing]	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	41.7	1.4e-39
SQI28240.1|4568432_4569278_+	Glucosamine--fructose-6-phosphateamino transferase [isomerizing]	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	46.1	5.3e-61
SQI28241.1|4569626_4570199_+	phosphate ABC transporter periplasmic substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	41.7	1.2e-27
SQI28242.1|4570195_4570666_+	phosphate ABC transporter periplasmic substrate-binding protein PstS	NA	M4QHS4	Cyanophage	31.0	3.6e-11
SQI28243.1|4570791_4571031_+	phosphate transporter permease	NA	NA	NA	NA	NA
SQI28244.1|4570973_4571750_+	phosphate transporter permease	NA	NA	NA	NA	NA
SQI28245.1|4571749_4572640_+	phosphate transporter permease	NA	NA	NA	NA	NA
SQI28246.1|4572746_4573520_+	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.6	2.0e-14
