The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	366711	427565	4907449	integrase,transposase	Bacillus_phage(30.0%)	56	424079:424094	431335:431350
SQH87166.1|366711_366948_+|integrase	integrase-like protein Y4LS	integrase	NA	NA	NA	NA
SQH87167.1|366984_367815_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87168.1|367832_368294_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87169.1|368559_369864_-	phospho-beta-glucosidase B	NA	NA	NA	NA	NA
SQH87170.1|369970_370297_+	transcriptional regulator	NA	NA	NA	NA	NA
SQH87171.1|370260_370467_-	Uncharacterised protein	NA	Q716C2	Shigella_phage	66.7	4.6e-19
SQH87172.1|370585_371662_-	Transposase IS116/IS110/IS902 family	NA	NA	NA	NA	NA
SQH87173.1|371868_372357_-|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	transposase	S5FNT8	Shigella_phage	69.0	2.3e-56
SQH87174.1|372606_372792_-|transposase	transposase insN	transposase	NA	NA	NA	NA
SQH87175.1|373525_373852_-	Orf10	NA	NA	NA	NA	NA
SQH87176.1|373875_374637_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH87177.1|374636_375119_-	Positive regulator GrlA	NA	NA	NA	NA	NA
SQH87178.1|375221_375659_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87179.1|375678_376185_-	Protein of uncharacterised function (DUF2919)	NA	NA	NA	NA	NA
SQH87180.1|376171_378229_-	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family	NA	NA	NA	NA	NA
SQH87181.1|378359_387320_-	Heme:hemopexin utilization protein A	NA	NA	NA	NA	NA
SQH87182.1|387474_389232_-	Heme/hemopexin transporter protein huxB precursor	NA	NA	NA	NA	NA
SQH87183.1|389868_391107_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
SQH87184.1|391096_392059_+	Multifunctional cyclase-dehydratase-3-O-methyl transferase tcmN	NA	NA	NA	NA	NA
SQH87185.1|392055_393021_+	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	NA	NA	NA	NA	NA
SQH87186.1|393007_394177_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87187.1|394164_395259_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87188.1|395886_396156_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH87189.1|396497_397103_-	Plasmid replication region DNA-binding N-term	NA	NA	NA	NA	NA
SQH87190.1|397675_397894_+	CcdA protein (antitoxin to CcdB)	NA	NA	NA	NA	NA
SQH87191.1|397895_398201_+	pirin	NA	NA	NA	NA	NA
SQH87192.1|398202_398529_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH87193.1|398518_399316_+	resolvase	NA	I3WFA4	Macacine_betaherpesvirus	90.4	5.0e-53
SQH87194.1|399376_400021_-	replication protein	NA	NA	NA	NA	NA
SQH87195.1|400617_400854_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87196.1|401115_401643_+	colicin Ib, pore forming protein	NA	NA	NA	NA	NA
SQH87197.1|401661_402195_-	Microcin-A immunity protein	NA	NA	NA	NA	NA
SQH87198.1|402197_402317_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87199.1|402330_402474_+	Lysis protein for colicin N precursor	NA	NA	NA	NA	NA
SQH87200.1|402845_404201_+	colicin Ib, pore forming protein	NA	NA	NA	NA	NA
SQH87201.1|404276_404822_+	YacC	NA	NA	NA	NA	NA
SQH87202.1|404827_405484_-	putative cytoplasmic protein	NA	Q2A0A7	Sodalis_phage	50.8	2.9e-46
SQH87203.1|405586_406588_-|integrase	site-specific integrase/recombinase	integrase	A0A142F1N9	Bacillus_phage	23.3	8.9e-15
SQH87204.1|406584_407499_-	Tyrosine recombinase XerD	NA	S5W9T9	Leptospira_phage	24.9	4.3e-08
SQH87205.1|407492_408752_-|integrase	site-specific integrase/recombinase	integrase	NA	NA	NA	NA
SQH87206.1|408875_409175_-	Uncharacterized protein YfaD	NA	NA	NA	NA	NA
SQH87207.1|409409_409646_-	Ferrous iron-sensisng transcriptional regulator FeoC	NA	NA	NA	NA	NA
SQH87208.1|409658_411977_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
SQH87209.1|411995_412223_-	ferrous iron transport protein	NA	NA	NA	NA	NA
SQH87210.1|412659_414990_-	transcription accessory protein	NA	NA	NA	NA	NA
SQH87211.1|415088_415562_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
SQH87212.1|415787_416507_+	osmolarity response regulator	NA	W8CYM9	Bacillus_phage	34.7	3.5e-29
SQH87213.1|416503_417856_+	two-component sensor kinase EnvZ	NA	W8CYF6	Bacillus_phage	22.9	9.5e-12
SQH87214.1|417930_419550_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	53.3	1.2e-141
SQH87215.1|419929_421639_+	membrane protein	NA	NA	NA	NA	NA
SQH87216.1|421749_422628_-	33 kDa chaperonin (Heat shock protein 33)(HSP33)	NA	NA	NA	NA	NA
SQH87217.1|422652_423054_-	heat shock protein	NA	NA	NA	NA	NA
SQH87218.1|423064_423733_-	hydrolase	NA	NA	NA	NA	NA
SQH87219.1|423797_425930_-	IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system	NA	NA	NA	NA	NA
424079:424094	attL	TGAGCGTTTGCGCCAG	NA	NA	NA	NA
SQH87220.1|426219_426816_+	NUDIX hydrolase	NA	NA	NA	NA	NA
SQH87221.1|426881_427565_-|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
431335:431350	attR	CTGGCGCAAACGCTCA	NA	NA	NA	NA
>prophage 2
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	498117	581956	4907449	holin,tRNA,integrase,terminase,head,transposase,tail,capsid,protease	Salmonella_phage(33.33%)	88	521515:521537	559654:559676
SQH87307.1|498117_499065_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.9	6.5e-07
SQH87308.1|499080_499590_-	polypeptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	6.7e-19
SQH87309.1|499721_500846_+	DNA protecting protein DprA	NA	NA	NA	NA	NA
SQH87310.1|500817_501291_+	Protein of uncharacterised function Smg	NA	NA	NA	NA	NA
SQH87311.1|501317_501860_+	DNA topoisomerase I-related protein	NA	NA	NA	NA	NA
SQH87312.1|501864_502437_+	putative ribosome maturation factor	NA	A0A291ATS8	Pandoravirus	27.3	9.9e-11
SQH87313.1|502438_503260_+	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
SQH87314.1|503256_503514_+	putative periplasmic protein	NA	NA	NA	NA	NA
SQH87315.1|503489_504044_-	transferase	NA	NA	NA	NA	NA
SQH87316.1|510047_510449_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH87317.1|510619_511303_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH87318.1|512086_512308_-	lipoprotein	NA	NA	NA	NA	NA
SQH87319.1|512544_515658_-	acriflavin resistance protein F	NA	NA	NA	NA	NA
SQH87320.1|515669_516827_-	acriflavin resistance protein E	NA	NA	NA	NA	NA
SQH87321.1|517239_517902_+	DNA-binding transcriptional regulator EnvR	NA	NA	NA	NA	NA
SQH87322.1|517904_520004_-	histidine kinase	NA	G3MA91	Bacillus_virus	33.5	7.1e-22
SQH87323.1|520153_520318_-	protein yhdU	NA	NA	NA	NA	NA
SQH87324.1|520400_521285_-	methyltransferase	NA	M4QNN5	Ostreococcus_lucimarinus_virus	32.8	1.3e-25
521515:521537	attL	TGTGGGGCACATGGTGGGGCACA	NA	NA	NA	NA
SQH87325.1|521748_522978_+|integrase	phage integrase family protein	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	60.3	7.8e-154
SQH87326.1|522974_523625_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87327.1|523931_524216_+	prophage DNA-binding protein	NA	NA	NA	NA	NA
SQH87328.1|524236_524887_+	bacteriophage protein	NA	A0A0P0J0J7	Acinetobacter_phage	47.1	8.3e-22
SQH87329.1|524951_525137_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87330.1|525324_525612_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87331.1|525604_525766_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87332.1|525758_526157_+	DNA primase	NA	A0A286SGR4	Klebsiella_phage	54.2	1.1e-11
SQH87333.1|526149_526320_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87334.1|526312_526540_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87335.1|526520_526886_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87336.1|526878_527631_+	phage-like protein	NA	A0A0P0ZD96	Stx2-converting_phage	77.8	4.3e-30
SQH87337.1|527627_527933_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87338.1|528022_528406_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87339.1|528398_529046_+	Uncharacterised protein	NA	A0A286S1S7	Klebsiella_phage	39.0	3.6e-33
SQH87340.1|529056_531198_+	P4 alpha zinc-binding domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	57.6	6.6e-193
SQH87341.1|531194_531590_+	ssDNA-binding protein	NA	NA	NA	NA	NA
SQH87342.1|531633_532626_+	Fels-1 prophage	NA	A0A1B5FPA6	Escherichia_phage	52.1	6.0e-72
SQH87343.1|532710_533526_+	Phage antitermination protein Q	NA	A0A1B5FPA5	Escherichia_phage	75.6	2.3e-106
SQH87344.1|533689_534373_-	virulence protein	NA	Q9MBM0	Phage_Gifsy-2	69.2	3.6e-84
SQH87345.1|535196_535535_+|holin	phage holin, lambda family protein	holin	Q8HA87	Salmonella_phage	100.0	9.9e-43
SQH87346.1|535537_536152_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	91.7	6.7e-106
SQH87347.1|536148_536700_+|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQH87348.1|536689_537103_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87349.1|537148_537694_-	Uncharacterised protein	NA	S4TR57	Salmonella_phage	98.3	4.7e-95
SQH87350.1|537770_538106_+	Uncharacterised protein	NA	S4TTH3	Salmonella_phage	89.2	1.0e-52
SQH87351.1|538187_538529_+	Gp74	NA	A0A2I6PIG1	Escherichia_phage	74.8	3.9e-47
SQH87352.1|538648_539113_+|terminase	terminase	terminase	Q9B019	Phage_GMSE-1	62.1	2.2e-48
SQH87353.1|539066_540809_+|terminase	phage terminase, large subunit	terminase	A0A0U2C138	Paracoccus_phage	44.5	6.5e-138
SQH87354.1|540808_542113_+	histone H1	NA	K7PJU5	Enterobacteria_phage	86.4	4.7e-218
SQH87355.1|542126_542975_+	peptidase	NA	K7PH05	Enterobacteria_phage	88.2	1.3e-131
SQH87356.1|542984_544202_+|capsid	capsid protein	capsid	K7PM57	Enterobacteria_phage	88.9	1.2e-199
SQH87357.1|544245_544524_+	Uncharacterised protein	NA	K7PHI6	Enterobacteria_phage	66.0	3.1e-10
SQH87358.1|544523_544850_+	phage protein	NA	K7PKT4	Enterobacteria_phage	84.3	1.2e-48
SQH87359.1|544859_545198_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
SQH87360.1|545194_545644_+	phage protein, HK97 gp10 family	NA	S4TR46	Salmonella_phage	97.3	1.1e-73
SQH87361.1|545640_545988_+	Protein of uncharacterised function (DUF3168)	NA	S4TTG3	Salmonella_phage	78.8	7.5e-46
SQH87362.1|546045_546750_+|tail	tail protein	tail	K7PHL2	Enterobacterial_phage	76.1	1.4e-94
SQH87363.1|546776_547148_+|tail	phage tail protein	tail	S4TSQ0	Salmonella_phage	90.1	6.3e-59
SQH87364.1|547159_547450_+|tail	phage tail protein	tail	S4TND7	Salmonella_phage	95.7	2.9e-43
SQH87365.1|547508_547886_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87366.1|548020_551227_+|tail	tail length tape measure protein	tail	K7PKG1	Enterobacteria_phage	69.0	0.0e+00
SQH87367.1|551268_551421_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87368.1|551397_551637_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87369.1|551802_552396_+	Uncharacterised protein	NA	S4TSP7	Salmonella_phage	95.4	3.4e-107
SQH87370.1|552395_552980_+	Uncharacterised protein	NA	S4TND4	Salmonella_phage	96.9	5.4e-105
SQH87371.1|552986_553385_+	Uncharacterised protein	NA	S4TR39	Salmonella_phage	94.7	2.9e-70
SQH87372.1|553384_556105_+|tail	tail protein	tail	S4TTF5	Salmonella_phage	97.6	0.0e+00
SQH87373.1|556113_557073_+	Uncharacterised protein	NA	H6WRW5	Salmonella_phage	96.6	3.5e-178
SQH87374.1|557083_558382_+	Uncharacterised protein	NA	I6R0Q9	Salmonella_phage	67.6	1.7e-159
SQH87375.1|558517_558628_-	virulence protein	NA	K7P6H1	Enterobacteria_phage	91.7	3.2e-11
SQH87376.1|558706_559231_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87377.1|559743_560040_-	Fis DNA-binding protein	NA	NA	NA	NA	NA
559654:559676	attR	TGTGGGGCACATGGTGGGGCACA	NA	NA	NA	NA
SQH87378.1|560065_561031_-|tRNA	tRNA-dihydrouridine synthase B	tRNA	NA	NA	NA	NA
SQH87379.1|561691_562573_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQH87380.1|562584_564036_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
SQH87381.1|564025_564268_-	Membrane protein	NA	NA	NA	NA	NA
SQH87382.1|564376_565726_-	biotin carboxylase	NA	NA	NA	NA	NA
SQH87383.1|565736_566207_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA	NA
SQH87384.1|566599_567199_-	Membrane protein YedZ	NA	NA	NA	NA	NA
SQH87385.1|567199_568204_-	reductase	NA	NA	NA	NA	NA
SQH87386.1|568316_569291_-	oxidoreductase	NA	NA	NA	NA	NA
SQH87387.1|569494_571435_+	lipoprotein	NA	NA	NA	NA	NA
SQH87388.1|571742_572786_+	rod shape-determining protein mreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
SQH87389.1|572850_573903_+	rod shape-determining protein	NA	NA	NA	NA	NA
SQH87390.1|573902_574394_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQH87391.1|574402_574996_+	Septum formation protein Maf	NA	NA	NA	NA	NA
SQH87392.1|574985_576455_+	ribonuclease G	NA	NA	NA	NA	NA
SQH87393.1|576565_580366_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA	NA
SQH87394.1|580510_581956_+|protease	protease TldD	protease	NA	NA	NA	NA
>prophage 3
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	598341	654993	4907449	integrase,transposase,protease	Staphylococcus_phage(11.76%)	58	653622:653640	656763:656781
SQH87413.1|598341_599412_-|protease	serine endoprotease	protease	NA	NA	NA	NA
SQH87414.1|599504_600872_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.3	2.7e-22
SQH87415.1|601028_601427_-	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
SQH87416.1|601619_602744_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
SQH87417.1|603045_603474_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQH87418.1|603489_603882_+	30S ribosomal subunit protein S9	NA	NA	NA	NA	NA
SQH87419.1|604196_604835_+	stringent starvation protein A	NA	NA	NA	NA	NA
SQH87420.1|604840_605341_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.8	2.5e-26
SQH87421.1|605458_606241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQH87422.1|606375_607269_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQH87423.1|607384_608875_+	Sialic acid transporter (permease) NanT	NA	Q6JIH2	Burkholderia_virus	21.9	7.8e-07
SQH87424.1|608921_609611_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
SQH87425.1|609607_610483_+	kinase	NA	NA	NA	NA	NA
SQH87426.1|610479_610947_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH87427.1|611028_612309_-	cytosine deaminase	NA	NA	NA	NA	NA
SQH87428.1|612295_613549_-	cytosine permease	NA	NA	NA	NA	NA
SQH87429.1|613666_614770_-	Uncharacterized conserved protein	NA	A0A0U2BZN7	Salmonella_phage	88.1	1.9e-74
SQH87430.1|614977_616396_-	glutamate synthase	NA	NA	NA	NA	NA
SQH87431.1|616405_620866_-	glutamate synthase subunit alpha	NA	NA	NA	NA	NA
SQH87432.1|621537_622467_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	35.0	6.7e-17
SQH87433.1|622560_624897_+	aerobic respiration control sensor protein ArcB	NA	A0A1V0SGX0	Hokovirus	30.6	6.0e-38
SQH87434.1|625123_625777_+	Enhancing lycopene biosynthesis protein 2	NA	NA	NA	NA	NA
SQH87435.1|625773_626502_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
SQH87436.1|626576_627209_-	PhoP regulatory network protein YrbL	NA	NA	NA	NA	NA
SQH87437.1|627458_627731_-	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
SQH87438.1|627727_628582_-	glmZ(sRNA)-inactivating NTPase	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.4e-05
SQH87439.1|628627_629119_-	nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
SQH87440.1|629236_629524_-	sigma(54) modulation protein	NA	NA	NA	NA	NA
SQH87441.1|629546_630980_-	RNA polymerase sigma-54 factor (sigma-N)	NA	NA	NA	NA	NA
SQH87442.1|631027_631753_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	7.1e-22
SQH87443.1|631759_632314_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
SQH87444.1|632282_632858_-	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	NA	NA	NA	NA	NA
SQH87445.1|632854_633421_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	A0A140XBD6	Dickeya_phage	74.3	3.6e-53
SQH87446.1|633441_634428_-	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	31.2	1.1e-38
SQH87447.1|634441_635419_-	Inner membrane protein YrbG predicted calcium/sodium:proton antiporter	NA	A0A2D1GNI8	Pseudoalteromonas_phage	22.9	1.5e-06
SQH87448.1|635631_636444_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.2	9.7e-20
SQH87449.1|636451_637234_+	putative ABC transporter permease component YrbE	NA	NA	NA	NA	NA
SQH87450.1|637238_637790_+	putative ABC transporter periplasmic component YrbD	NA	NA	NA	NA	NA
SQH87451.1|637808_638444_+	putative ABC transporter auxiliary component YrbC	NA	NA	NA	NA	NA
SQH87452.1|638443_638740_+	sulfate transporter	NA	NA	NA	NA	NA
SQH87453.1|638888_639182_+	YrbA protein	NA	NA	NA	NA	NA
SQH87454.1|639235_640495_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQH87455.1|640552_640840_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	68.7	3.5e-17
SQH87456.1|641072_642185_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.8	9.0e-08
SQH87457.1|642301_642613_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQH87458.1|642632_642890_+	50S ribosomal subunit protein L27	NA	NA	NA	NA	NA
SQH87459.1|643019_643985_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
SQH87460.1|644000_645173_+	GTPase ObgE	NA	NA	NA	NA	NA
SQH87461.1|645303_646737_-	penicillin-binding protein	NA	NA	NA	NA	NA
SQH87462.1|646984_647461_+	transcription elongation factor	NA	NA	NA	NA	NA
SQH87463.1|647616_647949_-	RNA binding protein	NA	NA	NA	NA	NA
SQH87464.1|648036_648663_+	cell division protein	NA	NA	NA	NA	NA
SQH87465.1|648757_650701_+|protease	ATP-dependent metalloprotease	protease	G8DDJ2	Micromonas_pusilla_virus	43.3	7.0e-117
SQH87466.1|650805_651654_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	30.3	1.4e-21
SQH87467.1|651646_652984_+	PGM/PMM family protein	NA	NA	NA	NA	NA
SQH87468.1|653206_653539_+	Protein-export membrane protein secG	NA	NA	NA	NA	NA
653622:653640	attL	GTCCCGTCCTCGGTACCAA	NA	NA	NA	NA
SQH87469.1|653737_654139_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH87470.1|654309_654993_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
656763:656781	attR	GTCCCGTCCTCGGTACCAA	NA	NA	NA	NA
>prophage 4
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	1027408	1076092	4907449	integrase,transposase,tRNA	Escherichia_phage(28.57%)	52	1059862:1059877	1080009:1080024
SQH87810.1|1027408_1027969_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH87811.1|1027982_1029002_+	CRISPR-associated protein Cse4	NA	NA	NA	NA	NA
SQH87812.1|1029051_1029798_+	CRISPR-associated protein Cas5e family	NA	NA	NA	NA	NA
SQH87813.1|1029779_1030346_+	CRISPR-associated protein Cse3 family	NA	NA	NA	NA	NA
SQH87814.1|1030342_1031263_+	CRISPR-associated protein Cas1	NA	NA	NA	NA	NA
SQH87815.1|1031262_1031556_+	ssRNA endonuclease	NA	NA	NA	NA	NA
SQH87816.1|1032305_1033352_-	alkaline phosphatase isozyme conversion aminopeptidase	NA	NA	NA	NA	NA
SQH87817.1|1033602_1034511_+	Sulfate adenylyltransferase subunit 2 1	NA	NA	NA	NA	NA
SQH87818.1|1034520_1035960_+	ATP sulfurylase	NA	A0A1V0SGC3	Hokovirus	26.5	2.7e-33
SQH87819.1|1035946_1036552_+	adenosine 5-phosphosulfate kinase	NA	A0A2K9L4R9	Tupanvirus	39.6	2.2e-29
SQH87820.1|1036602_1036926_+	Inner membrane protein ygbE	NA	NA	NA	NA	NA
SQH87821.1|1037116_1037428_+	Cell division protein DivIC (FtsB) stabilizesFtsL against RasP cleavage	NA	NA	NA	NA	NA
SQH87822.1|1037446_1038157_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
SQH87823.1|1038156_1038636_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
SQH87824.1|1038632_1039682_+|tRNA	tRNA pseudouridine 13 synthase	tRNA	NA	NA	NA	NA
SQH87825.1|1039662_1040424_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.8	1.4e-57
SQH87826.1|1040417_1041044_+	L-isoaspartyl protein carboxyl methyltransferase type II	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	4.8e-35
SQH87827.1|1041219_1042341_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	5.0e-06
SQH87828.1|1042403_1043396_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
SQH87829.1|1043500_1043902_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH87830.1|1044072_1044756_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH87831.1|1044756_1044993_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA	NA
SQH87832.1|1045003_1046431_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA	NA
SQH87833.1|1046430_1047024_-	decarboxylase	NA	NA	NA	NA	NA
SQH87834.1|1047194_1047599_+	Transcriptional regulator hosA	NA	NA	NA	NA	NA
SQH87835.1|1047617_1048382_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.5	1.1e-70
SQH87836.1|1048578_1049502_+	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	77.4	1.7e-116
SQH87837.1|1049495_1050758_+	membrane protein	NA	A0A077SLJ7	Escherichia_phage	61.8	1.7e-132
SQH87838.1|1050754_1051393_+	sugar aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.8e-85
SQH87839.1|1051397_1052174_+	putative hydroxypyruvate isomerase	NA	NA	NA	NA	NA
SQH87840.1|1052213_1053164_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
SQH87841.1|1053160_1054657_+	permease	NA	NA	NA	NA	NA
SQH87842.1|1054698_1055610_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQH87843.1|1055718_1056927_+	membrane protein	NA	NA	NA	NA	NA
SQH87844.1|1056923_1057304_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH87845.1|1057359_1059921_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	21.2	8.6e-30
1059862:1059877	attL	CAGCTTGAGATACTGC	NA	NA	NA	NA
SQH87846.1|1060138_1061422_+|integrase	site-specific recombinase, phage integrase family protein	integrase	I6R9B6	Salmonella_phage	27.3	1.7e-18
SQH87847.1|1061589_1063380_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQH87848.1|1063376_1065740_+	Protein of uncharacterised function DUF262	NA	NA	NA	NA	NA
SQH87849.1|1066378_1068118_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87850.1|1068114_1068975_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87851.1|1069090_1070230_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87852.1|1070839_1071052_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87853.1|1071119_1071509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87854.1|1071540_1071900_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87855.1|1071914_1072442_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87856.1|1072844_1073333_+	putative bacteriophage protein	NA	NA	NA	NA	NA
SQH87857.1|1073657_1074080_+	Protein of uncharacterised function (DUF2787)	NA	NA	NA	NA	NA
SQH87858.1|1074121_1074661_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH87859.1|1074662_1075115_+	DNA repair protein, RadC family	NA	NA	NA	NA	NA
SQH87860.1|1075161_1075671_+|integrase	integrase/recombinase	integrase	NA	NA	NA	NA
SQH87861.1|1075630_1076092_+|integrase	integrase/recombinase	integrase	A0A1B1P7C7	Bacillus_phage	29.0	3.8e-05
1080009:1080024	attR	CAGCTTGAGATACTGC	NA	NA	NA	NA
>prophage 5
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	1333089	1375761	4907449	integrase,tail,protease	Escherichia_phage(43.9%)	60	1325823:1325837	1338556:1338570
1325823:1325837	attL	CGGTTTGCCGGTCAG	NA	NA	NA	NA
SQH88095.1|1333089_1334319_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	95.8	4.8e-236
SQH88096.1|1334349_1334919_-	bacteriophage protein	NA	A0A2R2Z302	Escherichia_phage	72.6	1.6e-40
SQH88097.1|1335184_1335460_-	excisionase-like protein	NA	H6WRW8	Salmonella_phage	69.8	1.6e-27
SQH88098.1|1335500_1335743_-	putative bacteriophage protein	NA	H6WRW9	Salmonella_phage	96.2	4.9e-36
SQH88099.1|1335745_1338094_-	putative DNA methylase	NA	A0A1B0V7P0	Salmonella_phage	48.2	6.4e-197
SQH88100.1|1338090_1338711_-	Integration, recombination (Phage or Prophage)	NA	A0A0S2SY31	Pseudomonas_phage	56.8	9.3e-55
1338556:1338570	attR	CGGTTTGCCGGTCAG	NA	NA	NA	NA
SQH88101.1|1338710_1339454_-	Recombinational DNA repair protein RecT (prophage associated)	NA	A0A0M4RD39	Salmonella_phage	68.8	3.7e-66
SQH88102.1|1339459_1339756_-	Host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	95.9	1.3e-46
SQH88103.1|1339836_1339986_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88104.1|1339978_1340116_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88105.1|1340343_1340787_-	transcriptional repressor DicA	NA	NA	NA	NA	NA
SQH88106.1|1340815_1341067_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA	NA
SQH88107.1|1341087_1341411_+	repressor	NA	H6WRX6	Salmonella_phage	58.2	1.6e-26
SQH88108.1|1341502_1341712_+|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	NA	NA	NA	NA
SQH88109.1|1341674_1342388_+	DNA-binding protein	NA	A5LH71	Enterobacteria_phage	56.2	1.8e-41
SQH88110.1|1342384_1343077_+	replication protein P	NA	G8C7U6	Escherichia_phage	59.3	6.7e-78
SQH88111.1|1343090_1343729_+	Uncharacterised protein	NA	M1F3E2	Salmonella_phage	96.7	2.0e-121
SQH88112.1|1343725_1344736_+	EaD	NA	A0A0M5M1J9	Salmonella_phage	99.1	2.4e-52
SQH88113.1|1344738_1344924_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88114.1|1344927_1345206_+	Gp38	NA	Q1MVF7	Enterobacteria_phage	45.7	2.5e-15
SQH88115.1|1345202_1345568_+	Eaa protein	NA	A0A2I6PID9	Escherichia_phage	86.3	4.8e-35
SQH88116.1|1345627_1345894_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	97.7	5.7e-46
SQH88117.1|1346049_1346283_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	87.0	4.9e-33
SQH88118.1|1346394_1346586_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88119.1|1346643_1347240_+	IrsA	NA	A0A0U2RT94	Escherichia_phage	50.3	4.4e-54
SQH88120.1|1347239_1347446_+	Phage protein	NA	S4TNP0	Salmonella_phage	98.5	3.9e-34
SQH88121.1|1347448_1348060_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.5	2.7e-91
SQH88122.1|1348056_1348194_+	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	84.2	1.7e-09
SQH88123.1|1348193_1349003_+	molecular chaperone	NA	M9NZB0	Enterobacteria_phage	71.4	2.7e-110
SQH88124.1|1349785_1350595_+	Colicin-M	NA	NA	NA	NA	NA
SQH88125.1|1350631_1350973_-	Microcin-M immunity protein	NA	NA	NA	NA	NA
SQH88126.1|1351218_1351608_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
SQH88127.1|1351594_1351876_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
SQH88128.1|1351875_1352502_+	Phage endolysin	NA	Q858F0	Salmonella_phage	80.7	1.6e-94
SQH88129.1|1352498_1353050_+|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQH88130.1|1353039_1353453_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88131.1|1353513_1354254_+	putative bacteriophage protein	NA	A0A1I9KFG9	Aeromonas_phage	28.9	2.1e-13
SQH88132.1|1354255_1355587_+	Mu-like prophage FluMu protein gp28	NA	A0A0U2JTW9	Escherichia_phage	59.7	1.2e-152
SQH88133.1|1355598_1357020_+	Protein of uncharacterised function (DUF1073)	NA	A0A0U2S5X9	Escherichia_phage	37.7	1.4e-90
SQH88134.1|1357016_1357841_+	Uncharacterised protein	NA	A0A0U2I1R8	Escherichia_phage	39.7	1.9e-47
SQH88135.1|1357853_1359470_+	nudix hydrolase	NA	NA	NA	NA	NA
SQH88136.1|1359485_1360346_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88137.1|1360362_1361394_+	Uncharacterised protein	NA	A0A0U2QQI2	Escherichia_phage	46.6	1.2e-75
SQH88138.1|1361462_1361945_+	Uncharacterised protein	NA	A0A0U2SAX6	Escherichia_phage	32.8	1.9e-10
SQH88139.1|1361941_1362370_+	Uncharacterised protein	NA	A0A0U2S646	Escherichia_phage	38.4	5.1e-20
SQH88140.1|1362366_1362801_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88141.1|1362784_1363726_+	Uncharacterised protein	NA	A0A0U2SH76	Escherichia_phage	38.3	3.8e-52
SQH88142.1|1363730_1365125_+	Uncharacterised protein	NA	A0A0U2KD19	Escherichia_phage	36.8	4.6e-70
SQH88143.1|1365128_1365566_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88144.1|1365565_1366153_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88145.1|1366276_1368319_+	membrane-bound lytic transglycosylase F	NA	I6ZXX9	Escherichia_phage	35.8	6.7e-09
SQH88146.1|1368318_1369035_+	Uncharacterised protein	NA	A0A0U2JGI7	Escherichia_phage	39.1	1.7e-28
SQH88147.1|1369031_1369307_+	Uncharacterised protein	NA	A0A0U2JGJ3	Escherichia_phage	31.8	1.0e-05
SQH88148.1|1369306_1370359_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88149.1|1370355_1371072_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88150.1|1371068_1371401_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH88151.1|1371397_1372624_+	Uncharacterized homolog of phage Mu protein gp47	NA	A0A0U2RJZ0	Escherichia_phage	65.4	3.6e-151
SQH88152.1|1372607_1373234_+	Uncharacterised protein	NA	A0A0U2RK03	Escherichia_phage	71.2	9.6e-92
SQH88153.1|1373230_1374940_+|tail	side tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	66.0	2.0e-91
SQH88154.1|1374936_1375761_+	UPF0189 protein LA_4133	NA	A0A0M4QWS3	Salmonella_phage	94.5	4.9e-152
>prophage 6
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	1839505	1848677	4907449	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQH88558.1|1839505_1840453_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
SQH88559.1|1840436_1841168_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQH88560.1|1841148_1841256_-	membrane protein	NA	NA	NA	NA	NA
SQH88561.1|1841315_1842047_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQH88562.1|1842269_1843955_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQH88563.1|1843951_1844671_+	two-component system response regulator	NA	NA	NA	NA	NA
SQH88564.1|1844717_1845185_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQH88565.1|1845241_1845772_-	lipoprotein	NA	NA	NA	NA	NA
SQH88566.1|1845943_1846402_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
SQH88567.1|1846643_1848677_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 7
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	2100197	2144068	4907449	integrase,terminase,transposase,tRNA	Enterobacteria_phage(22.22%)	47	2121998:2122012	2140328:2140342
SQH88810.1|2100197_2101931_-|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.4	4.9e-85
SQH88811.1|2102167_2102737_+	Protein yecM	NA	NA	NA	NA	NA
SQH88812.1|2102756_2103503_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
SQH88813.1|2103738_2104710_-|tRNA	tRNA (5-methoxyuridine) 34 synthase	tRNA	NA	NA	NA	NA
SQH88814.1|2104706_2105450_-|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA	F5B419	Synechococcus_phage	30.9	5.4e-25
SQH88815.1|2105490_2105886_-	membrane protein	NA	NA	NA	NA	NA
SQH88816.1|2105938_2106757_-	Protein of uncharacterised function DUF72	NA	Q859D1	Escherichia_coli_phage	80.3	4.5e-57
SQH88817.1|2106753_2107320_-	putative isochorismatase hydrolase	NA	NA	NA	NA	NA
SQH88818.1|2107644_2109417_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH88819.1|2109519_2109972_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQH88820.1|2110001_2110742_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
SQH88821.1|2110778_2111300_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
SQH88822.1|2111301_2111901_-	protein yebB	NA	NA	NA	NA	NA
SQH88823.1|2112528_2113512_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQH88824.1|2113844_2114456_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA	NA
SQH88825.1|2114464_2115475_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	25.9	2.4e-07
SQH88826.1|2115553_2116339_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
SQH88827.1|2116335_2117091_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
SQH88828.1|2117112_2118114_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
SQH88829.1|2118129_2119449_+	Cell wall endopeptidase family M23/M37	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
SQH88830.1|2119565_2120534_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
SQH88831.1|2120534_2121218_-|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH88832.1|2121388_2121790_-|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH88833.1|2121924_2123367_-	pyruvate kinase A	NA	NA	NA	NA	NA
2121998:2122012	attL	ACCAGGTCGCCGGAA	NA	NA	NA	NA
SQH88834.1|2123490_2124360_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQH88835.1|2124701_2126177_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
SQH88836.1|2126411_2128223_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQH88837.1|2128260_2128902_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQH88838.1|2129001_2130180_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SQH88839.1|2130310_2130601_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
SQH88840.1|2130668_2131022_+	protein YebF	NA	NA	NA	NA	NA
SQH88841.1|2131115_2131775_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQH88842.1|2131987_2134039_+	oligopeptidase	NA	NA	NA	NA	NA
SQH88843.1|2134073_2134772_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
SQH88844.1|2134795_2135452_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQH88845.1|2135559_2135790_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQH88846.1|2135927_2136302_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQH88847.1|2136302_2137178_+	membrane protein	NA	NA	NA	NA	NA
SQH88848.1|2137194_2137548_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQH88849.1|2137930_2139010_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.2	3.7e-99
SQH88850.1|2139006_2140167_-	exodeoxyribonuclease 8	NA	Q9QF34	Lambdoid_phage	66.7	1.2e-55
SQH88851.1|2140426_2140960_+	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
2140328:2140342	attR	TTCCGGCGACCTGGT	NA	NA	NA	NA
SQH88852.1|2141216_2141384_-	lytic enzyme	NA	NA	NA	NA	NA
SQH88853.1|2141686_2142178_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
SQH88854.1|2142164_2142344_+|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	51.1	1.7e-06
SQH88855.1|2142363_2142738_+|terminase	phage terminase large subunit	terminase	Q8VNN7	Enterobacteria_phage	83.7	2.6e-60
SQH88856.1|2142730_2144068_+	Tail Fiber Protein	NA	E5G6P0	Salmonella_phage	52.1	7.6e-78
>prophage 8
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	2806575	2865074	4907449	portal,tRNA,integrase,terminase,transposase,tail,protease	Enterobacteria_phage(35.19%)	67	2800963:2800981	2841322:2841340
2800963:2800981	attL	ATAATGATTATCAATTGCA	NA	NA	NA	NA
SQH89499.1|2806575_2806815_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
SQH89500.1|2807025_2807190_-|transposase	transposase	transposase	NA	NA	NA	NA
SQH89501.1|2807687_2808497_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
SQH89502.1|2808569_2808947_+	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
SQH89503.1|2809095_2809638_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
SQH89504.1|2809821_2810550_-	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
SQH89505.1|2810566_2810980_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	7.1e-19
SQH89506.1|2812028_2813153_-	bacteriophage protein	NA	NA	NA	NA	NA
SQH89507.1|2813598_2813811_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.5e-20
SQH89508.1|2814064_2814736_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	8.2e-81
SQH89509.1|2815055_2817158_-	SspH1	NA	Q9MBL9	Phage_Gifsy-2	48.5	1.0e-28
SQH89510.1|2817329_2817851_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	89.6	4.0e-91
SQH89511.1|2817838_2818099_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	76.6	2.4e-12
SQH89512.1|2818052_2818355_-	regulator	NA	A0A077SLK2	Escherichia_phage	81.5	1.2e-39
SQH89513.1|2822748_2826144_-|tail	Phage tail fiber protein	tail	A0A0K2FI38	Escherichia_phage	75.5	0.0e+00
SQH89514.1|2826206_2826713_-|tail	tail protein	tail	A5LH42	Enterobacteria_phage	80.4	1.4e-69
SQH89515.1|2826751_2827489_-	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	85.8	6.1e-130
SQH89516.1|2827495_2828194_-|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	9.3e-104
SQH89517.1|2828203_2828533_-|tail	tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
SQH89518.1|2828535_2831577_-|tail	tail protein	tail	A0A291AWX1	Escherichia_phage	64.2	4.4e-291
SQH89519.1|2831548_2831863_-|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	63.8	1.1e-30
SQH89520.1|2831883_2832279_-|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
SQH89521.1|2832329_2833076_-|tail	putative tail component of prophage	tail	A0A291AWU6	Escherichia_phage	76.5	2.1e-98
SQH89522.1|2833086_2833488_-|tail	phage minor tail protein U	tail	A0A291AWY2	Escherichia_phage	65.4	1.6e-47
SQH89523.1|2833484_2834069_-|tail	prophage minor tail protein Z	tail	A5LH33	Enterobacteria_phage	77.1	3.4e-75
SQH89524.1|2834072_2834315_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	41.2	1.0e-09
SQH89525.1|2834340_2834664_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	63.2	1.0e-28
SQH89526.1|2834752_2836822_-|protease	ATP-dependent protease	protease	K7PGT6	Enterobacteria_phage	71.7	1.9e-274
SQH89527.1|2836784_2838320_-|portal	phage portal protein, lambda family protein	portal	K7PHM5	Enterobacterial_phage	63.1	3.7e-177
SQH89528.1|2838316_2838523_-	primosomal replication protein PriB/PriC domain protein	NA	A5LH28	Enterobacteria_phage	48.6	1.1e-07
SQH89529.1|2838519_2839155_-|terminase	phage terminase large subunit	terminase	A0A291AWY5	Escherichia_phage	53.7	1.7e-64
SQH89530.1|2839162_2840629_-|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	74.9	7.5e-212
SQH89531.1|2840615_2841107_-|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	57.5	4.5e-44
SQH89532.1|2841403_2841613_-	Uncharacterised protein	NA	K7PJU3	Enterobacteria_phage	86.6	2.9e-29
2841322:2841340	attR	ATAATGATTATCAATTGCA	NA	NA	NA	NA
SQH89533.1|2841674_2841920_-	Uncharacterised protein	NA	K7PKT0	Enterobacteria_phage	56.8	2.5e-19
SQH89534.1|2841977_2842529_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89535.1|2842583_2843126_-|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQH89536.1|2843122_2843737_-	bacteriophage protein	NA	Q8HA86	Salmonella_phage	84.3	2.8e-96
SQH89537.1|2843736_2844018_-	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
SQH89538.1|2844004_2844394_-	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	71.8	1.1e-40
SQH89539.1|2844614_2845751_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89540.1|2845761_2846184_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89541.1|2846176_2846812_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89542.1|2846808_2847174_-	phage antiterminator	NA	A5LH77	Enterobacteria_phage	82.5	3.3e-52
SQH89543.1|2847191_2848181_-	putative cytoplasmic protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	1.6e-189
SQH89544.1|2848188_2849049_-	phage protein	NA	A0A192Y6F8	Salmonella_phage	98.3	1.5e-159
SQH89545.1|2849065_2849455_-	crossover junction endodeoxyribonuclease	NA	K7PH72	Enterobacteria_phage	85.3	6.0e-60
SQH89546.1|2849451_2850105_-	DNA adenine methylase	NA	A5LH72	Enterobacteria_phage	88.9	4.2e-114
SQH89547.1|2850104_2850587_-	phage protein	NA	Q8HA95	Salmonella_phage	98.8	1.6e-86
SQH89548.1|2850588_2851548_-	Replication protein O	NA	U5P0A0	Shigella_phage	81.2	4.1e-118
SQH89549.1|2851544_2851769_-	phage protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
SQH89550.1|2852919_2853474_-	putative prophage product	NA	A0A1C9II13	Salmonella_phage	99.5	2.0e-101
SQH89551.1|2853502_2853727_-	DNA-binding protein	NA	A0A1C9IHV8	Salmonella_phage	98.6	2.1e-33
SQH89552.1|2853824_2854520_+	regulatory protein	NA	Q8HAA0	Salmonella_phage	99.1	8.6e-126
SQH89553.1|2854932_2855163_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89554.1|2855460_2856375_+	phage encoded recombination associated protein	NA	S4TWL4	Salmonella_phage	59.2	2.2e-97
SQH89555.1|2856469_2857009_+	phage protein	NA	A0A192Y8M4	Salmonella_phage	99.4	1.0e-97
SQH89556.1|2857079_2857952_+	EaD	NA	A0A0M5M1J9	Salmonella_phage	68.9	5.5e-53
SQH89557.1|2858207_2858501_+	Gp43	NA	A0A1V0E5L2	Salmonella_phage	96.9	2.7e-49
SQH89558.1|2858497_2859496_+	Eaa protein	NA	H6WRY2	Salmonella_phage	78.6	3.6e-101
SQH89559.1|2859545_2859782_+	excisionase	NA	NA	NA	NA	NA
SQH89560.1|2859771_2860914_+	Integrase	NA	O21929	Phage_21	80.0	3.1e-173
SQH89561.1|2861027_2862278_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
SQH89562.1|2862377_2863115_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SQH89563.1|2863111_2863441_+	putative secreted protein	NA	NA	NA	NA	NA
SQH89564.1|2863452_2863914_+	mutT family protein	NA	NA	NA	NA	NA
SQH89565.1|2863967_2865074_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
>prophage 9
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	2985031	3029299	4907449	terminase,transposase,tail,capsid,lysis,protease	Escherichia_phage(33.33%)	59	NA	NA
SQH89681.1|2985031_2985199_-	Stress-induced bacterial acidophilic repeat motif	NA	Q9KX95	Enterobacteria_phage	92.6	1.4e-05
SQH89682.1|2986291_2987122_+	Cytolethal distending toxin subunit A precursor	NA	G1BEM3	Escherichia_phage	43.2	8.6e-48
SQH89683.1|2987135_2987963_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	62.3	3.9e-93
SQH89684.1|2987959_2988517_+	Cytolethal distending toxin A/C family	NA	G1BEM5	Escherichia_phage	48.8	4.9e-39
SQH89685.1|2988785_2988968_+|transposase	IS3 transposase	transposase	NA	NA	NA	NA
SQH89686.1|2989851_2990247_-	Uncharacterized protein y4iH Flags: Precursor	NA	I1TQ41	Pseudomonas_phage	39.0	2.7e-15
SQH89687.1|2990378_2992433_-	Domain of uncharacterised function (DUF303)	NA	H6WZJ9	Escherichia_phage	57.7	5.8e-178
SQH89688.1|2992442_2992676_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89689.1|2992700_2993324_-|tail	phage tail assembly protein	tail	Q9LA61	Enterobacterial_phage	43.6	4.5e-41
SQH89690.1|2993334_2994132_-|tail	Phage tail fiber protein	tail	A0A2D1UII2	Escherichia_phage	44.2	4.4e-17
SQH89691.1|2994170_2997494_-|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	76.0	0.0e+00
SQH89692.1|2997556_2998063_-|tail	tail protein	tail	A5LH42	Enterobacteria_phage	80.4	1.4e-69
SQH89693.1|2998101_2998839_-	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	85.8	6.1e-130
SQH89694.1|2998845_2999544_-|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	9.3e-104
SQH89695.1|2999553_2999883_-|tail	tail protein	tail	A5LH39	Enterobacteria_phage	70.4	2.1e-42
SQH89696.1|2999888_3002993_-|tail	tail protein	tail	A5LH38	Enterobacteria_phage	49.3	2.3e-218
SQH89697.1|3002973_3003291_-|tail	Gifsy-2 prophage putative minor tail protein	tail	A5LH37	Enterobacteria_phage	55.7	5.6e-24
SQH89698.1|3003299_3003698_-|tail	minor tail protein	tail	A0A291AWW5	Escherichia_phage	53.8	1.3e-30
SQH89699.1|3003746_3004508_-|tail	major tail protein	tail	A0A291AWU6	Escherichia_phage	67.5	6.4e-90
SQH89700.1|3004519_3004924_-|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	59.7	1.8e-38
SQH89701.1|3004920_3005484_-|tail	prophage minor tail protein Z	tail	Q9G063	Phage_Gifsy-2	80.4	1.4e-09
SQH89702.1|3005473_3005764_-	ATP-binding protein	NA	NA	NA	NA	NA
SQH89703.1|3005756_3006080_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	57.5	5.5e-27
SQH89704.1|3006164_3008219_-|protease	ATP dependent Clp protease	protease	A0A291AWT6	Escherichia_phage	68.9	4.2e-261
SQH89705.1|3008169_3009717_-|capsid	capsid protein	capsid	K7PHM5	Enterobacterial_phage	64.0	8.2e-177
SQH89706.1|3009713_3009920_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	8.5e-05
SQH89707.1|3009916_3012058_-|terminase	phage terminase large subunit	terminase	A5LH27	Enterobacteria_phage	71.7	2.5e-288
SQH89708.1|3012011_3012551_-	Gifsy-2 prophage protein	NA	A0A291AWV8	Escherichia_phage	47.5	5.1e-33
SQH89709.1|3012775_3013240_-|lysis	bacteriophage lysis protein	lysis	S4TNN7	Salmonella_phage	72.7	5.0e-53
SQH89710.1|3013452_3013992_-	Phage endolysin R	NA	S5MQK2	Escherichia_phage	72.6	9.8e-77
SQH89711.1|3013969_3014188_-	Lysis protein S	NA	H9C183	Pectobacterium_phage	46.4	7.3e-07
SQH89712.1|3015021_3015705_+	virulence protein	NA	Q9MBM0	Phage_Gifsy-2	69.2	3.6e-84
SQH89713.1|3015868_3016684_-	Phage antitermination protein Q	NA	A0A1B5FPA5	Escherichia_phage	75.2	8.9e-106
SQH89714.1|3016680_3017001_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89715.1|3017003_3018875_-	gp61	NA	I6S1U6	Salmonella_phage	58.6	9.2e-223
SQH89716.1|3018877_3018985_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89717.1|3018981_3019986_-	replication protein O	NA	W8CYG5	Bacillus_phage	40.9	8.3e-29
SQH89718.1|3019982_3020297_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89719.1|3020293_3020491_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89720.1|3020492_3020732_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89721.1|3020837_3021293_+	transcriptional repressor DicA	NA	NA	NA	NA	NA
SQH89722.1|3021402_3021945_+	regulatory protein Cro (antirepressor)	NA	Q8W649	Enterobacteria_phage	34.0	2.0e-08
SQH89723.1|3022073_3022439_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89724.1|3022512_3022707_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89725.1|3022965_3023490_+	Uncharacterised protein	NA	L0AQZ0	Klebsiella_phage	46.1	1.9e-37
SQH89726.1|3023754_3023964_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH89727.1|3023944_3024304_+	Uncharacterised protein	NA	A0A1B5FPB3	Escherichia_phage	51.3	8.9e-26
SQH89728.1|3024303_3024540_+	Uncharacterised protein	NA	A0A286SGR4	Klebsiella_phage	62.9	2.4e-19
SQH89729.1|3024529_3024925_+	Uncharacterised protein	NA	A0A286S1S2	Klebsiella_phage	73.9	3.3e-50
SQH89730.1|3024936_3025785_+	bacteriophage protein	NA	F1C5A3	Cronobacter_phage	77.5	4.7e-126
SQH89731.1|3025781_3025961_+	Mobile element protein	NA	A0A088C4R7	Shewanella_sp._phage	55.6	1.2e-07
SQH89732.1|3025899_3026349_+	Mobile element protein	NA	NA	NA	NA	NA
SQH89733.1|3026345_3026570_+	Uncharacterised protein	NA	A0A1B5FPG2	Escherichia_phage	67.6	6.6e-19
SQH89734.1|3026566_3026779_+	Uncharacterised protein	NA	A0A286S2B6	Klebsiella_phage	80.0	4.0e-26
SQH89735.1|3026775_3027237_+	ATPase involved in DNA repair	NA	A0A1B5FPC7	Escherichia_phage	52.2	2.7e-43
SQH89736.1|3027236_3027554_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	NA	NA	NA	NA
SQH89737.1|3027550_3027697_+	Putative bacteriophage protein	NA	A0A1B5FPC2	Escherichia_phage	75.0	2.2e-15
SQH89738.1|3027704_3027953_+	excisionase	NA	Q859D3	Escherichia_coli_phage	73.0	9.5e-27
SQH89739.1|3028006_3029299_+	Integrase	NA	Q8W658	Enterobacteria_phage	72.9	1.1e-187
>prophage 10
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	3158521	3166608	4907449	integrase,transposase,protease	Enterobacteria_phage(14.29%)	7	3153077:3153091	3165344:3165358
3153077:3153091	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
SQH89850.1|3158521_3159205_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH89851.1|3159594_3160053_-|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	7.7e-14
SQH89852.1|3160244_3162521_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
SQH89853.1|3162551_3162872_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
SQH89854.1|3163195_3163417_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQH89855.1|3163546_3165493_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3165344:3165358	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
SQH89856.1|3165489_3166608_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 11
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	3250071	3297970	4907449	integrase,transposase	Enterobacteria_phage(12.5%)	47	3247209:3247224	3279136:3279151
3247209:3247224	attL	CGCTGCTGACGCTGTT	NA	NA	NA	NA
SQH89938.1|3250071_3250473_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH89939.1|3250643_3251327_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH89940.1|3251327_3252299_-	glycosyl transferase	NA	NA	NA	NA	NA
SQH89941.1|3252328_3254473_-	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	26.7	7.4e-43
SQH89942.1|3254680_3256042_-	ATP-dependent RNA helicase rhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	2.9e-53
SQH89943.1|3256271_3256946_+	HTH-type transcriptional regulator ybiH	NA	NA	NA	NA	NA
SQH89944.1|3256945_3257941_+	HlyD family secretion protein	NA	NA	NA	NA	NA
SQH89945.1|3257933_3259670_+	putative ABC transporter ATP-binding protein MA_1747	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.9	3.5e-19
SQH89946.1|3259662_3260793_+	ABC transport system permease component YbhS	NA	NA	NA	NA	NA
SQH89947.1|3260908_3262015_+	ABC transport system permease component YbhR	NA	NA	NA	NA	NA
SQH89948.1|3261976_3262387_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQH89949.1|3262519_3263278_+	Endonuclease/Exonuclease/ phosphatase family protein	NA	NA	NA	NA	NA
SQH89950.1|3263274_3264516_+	phospholipase	NA	NA	NA	NA	NA
SQH89951.1|3264515_3265478_+	Inner membrane protein YbhQ	NA	NA	NA	NA	NA
SQH89952.1|3265480_3265873_-	membrane protein	NA	NA	NA	NA	NA
SQH89953.1|3265869_3266040_-	membrane protein	NA	NA	NA	NA	NA
SQH89954.1|3266047_3266734_-	inner membrane protein	NA	NA	NA	NA	NA
SQH89955.1|3266679_3267201_-	membrane protein	NA	NA	NA	NA	NA
SQH89956.1|3267532_3268237_-	membrane protein	NA	NA	NA	NA	NA
SQH89957.1|3268284_3268737_-	molybdopterin converting factor, subunit 2	NA	NA	NA	NA	NA
SQH89958.1|3268738_3268984_-	molybdopterin converting factor subunit 1	NA	NA	NA	NA	NA
SQH89959.1|3268976_3269420_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
SQH89960.1|3269464_3269977_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
SQH89961.1|3271384_3272293_+	protein YbhK	NA	A1IMD5	Streptococcus_phage	29.9	2.7e-26
SQH89962.1|3272384_3274652_-	E3 ubiquitin-protein ligase SlrP	NA	Q9MBL9	Phage_Gifsy-2	43.0	1.1e-15
SQH89963.1|3275141_3277163_-	excision nuclease ABC subunit B	NA	NA	NA	NA	NA
SQH89964.1|3277813_3278500_-	dithiobiotin synthetase	NA	NA	NA	NA	NA
SQH89965.1|3278492_3279248_-	biotin biosynthesis protein BioC	NA	NA	NA	NA	NA
3279136:3279151	attR	AACAGCGTCAGCAGCG	NA	NA	NA	NA
SQH89966.1|3279231_3280389_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
SQH89967.1|3280385_3281426_-	biotin synthetase	NA	NA	NA	NA	NA
SQH89968.1|3281512_3282802_+	adenosylmethionine--8-amino-7-oxononanoate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.5	7.7e-19
SQH89969.1|3282859_3283336_+	UPF0098 protein ybhB	NA	NA	NA	NA	NA
SQH89970.1|3283420_3284941_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	39.8	1.1e-80
SQH89971.1|3284937_3286629_-	urocanate hydratase	NA	NA	NA	NA	NA
SQH89972.1|3286825_3287551_-	histidine utilization repressor	NA	NA	NA	NA	NA
SQH89973.1|3287595_3288537_-	formimidoylglutamase	NA	NA	NA	NA	NA
SQH89974.1|3288533_3289703_-	imidazolonepropionase	NA	NA	NA	NA	NA
SQH89975.1|3290379_3290742_+	translocase	NA	I1TED9	Salmonella_phage	98.3	6.6e-61
SQH89976.1|3290738_3291656_+	bactoprenol glucosyl transferase	NA	I1TED8	Salmonella_phage	97.0	1.4e-168
SQH89977.1|3291655_3293113_+	putative membrane protein	NA	NA	NA	NA	NA
SQH89978.1|3293959_3294130_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	79.6	6.1e-17
SQH89979.1|3294232_3294982_+	Transposase and inactivated derivatives, IS30 family	NA	NA	NA	NA	NA
SQH89980.1|3295105_3295372_+	Transposase and inactivated derivatives, IS30 family	NA	Q9MBM9	Staphylococcus_prophage	49.3	1.1e-15
SQH89981.1|3295896_3296334_+|transposase	transposase IS3	transposase	U5P429	Shigella_phage	85.7	5.3e-57
SQH89982.1|3296389_3296623_+|transposase	transposase IS1113	transposase	F6MIM4	Haemophilus_phage	72.5	1.2e-10
SQH89983.1|3296595_3297597_+|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	46.4	5.3e-44
SQH89984.1|3297661_3297970_+	Mobile element protein	NA	Q9MCR4	Enterobacteria_phage	94.1	4.9e-49
>prophage 12
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	3496954	3536872	4907449	holin,integrase,head,terminase,tail,capsid,lysis	Salmonella_phage(49.15%)	63	3493677:3493723	3536886:3536932
3493677:3493723	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
SQH90169.1|3496954_3497239_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	58.7	9.5e-15
SQH90170.1|3497475_3498771_-	Uncharacterised protein	NA	I6R0Q9	Salmonella_phage	63.4	3.0e-156
SQH90171.1|3498781_3499741_-	Uncharacterised protein	NA	H6WRW5	Salmonella_phage	99.4	6.2e-183
SQH90172.1|3499742_3502457_-|tail	tail protein	tail	S4TTF5	Salmonella_phage	93.3	0.0e+00
SQH90173.1|3502456_3502855_-	Uncharacterised protein	NA	S4TR39	Salmonella_phage	93.9	5.0e-70
SQH90174.1|3502861_3503446_-	Uncharacterised protein	NA	S4TND4	Salmonella_phage	97.4	3.2e-105
SQH90175.1|3503445_3504039_-	Uncharacterised protein	NA	S4TSP7	Salmonella_phage	93.9	1.9e-105
SQH90176.1|3504206_3504404_+	Uncharacterised protein	NA	H6WRV6	Salmonella_phage	100.0	5.6e-30
SQH90177.1|3504387_3504600_-	Uncharacterised protein	NA	H6WRV5	Salmonella_phage	100.0	4.4e-33
SQH90178.1|3504641_3507953_-|tail	tail length tape measure protein	tail	S4TTF9	Salmonella_phage	82.0	0.0e+00
SQH90179.1|3507956_3508334_-	Uncharacterised protein	NA	S4TR42	Salmonella_phage	77.3	4.9e-43
SQH90180.1|3508390_3508597_-|tail	phage tail protein	tail	Q9MCS5	Enterobacteria_phage	85.3	1.8e-26
SQH90181.1|3508677_3509067_-|tail	phage tail protein	tail	K7PKV6	Enterobacterial_phage	85.3	7.3e-58
SQH90182.1|3509094_3509799_-|tail	tail protein	tail	K7PHL2	Enterobacterial_phage	76.1	1.4e-94
SQH90183.1|3509856_3510204_-	Protein of uncharacterised function (DUF3168)	NA	S4TTG3	Salmonella_phage	78.8	7.5e-46
SQH90184.1|3510200_3510650_-	phage protein, HK97 gp10 family	NA	S4TR46	Salmonella_phage	97.3	1.1e-73
SQH90185.1|3510646_3510985_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
SQH90186.1|3510994_3511321_-	phage protein	NA	K7PKT4	Enterobacteria_phage	84.3	1.2e-48
SQH90187.1|3511320_3511572_-	Uncharacterised protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.8e-10
SQH90188.1|3511615_3512833_-|capsid	capsid protein	capsid	K7PM57	Enterobacteria_phage	88.6	2.1e-199
SQH90189.1|3512842_3513691_-	peptidase	NA	K7PH05	Enterobacteria_phage	88.9	2.0e-132
SQH90190.1|3513704_3515009_-	histone H1	NA	K7PJU5	Enterobacteria_phage	94.0	5.6e-235
SQH90191.1|3515008_3516745_-|terminase	terminase	terminase	K7PKT2	Enterobacteria_phage	97.9	0.0e+00
SQH90192.1|3516744_3517218_-|terminase	terminase	terminase	K7PHI2	Enterobacteria_phage	96.8	1.5e-84
SQH90193.1|3517374_3517725_-	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	77.6	2.5e-49
SQH90194.1|3517809_3518340_-	phage protein	NA	A0A2H4FQV0	Salmonella_phage	98.3	1.8e-91
SQH90195.1|3518552_3519023_-|lysis	bacteriophage lysis protein	lysis	Q76H63	Enterobacteria_phage	84.1	1.9e-60
SQH90196.1|3519019_3519457_-	phage lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	6.3e-74
SQH90197.1|3519440_3519767_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
SQH90198.1|3520201_3520825_-	Phage antitermination protein Q	NA	C6ZR62	Salmonella_phage	99.0	2.0e-113
SQH90199.1|3520821_3521004_-	protein Niprotein NZ	NA	C6ZR61	Salmonella_phage	96.7	9.4e-24
SQH90200.1|3520991_3521462_-	Uncharacterised protein	NA	C6ZR60	Salmonella_phage	95.5	8.2e-88
SQH90201.1|3521442_3521679_-	Uncharacterised protein	NA	C6ZR59	Salmonella_phage	88.5	4.5e-34
SQH90202.1|3522011_3522230_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90203.1|3522226_3522775_-	DNA adenine methylase	NA	E5AGF8	Erwinia_phage	63.7	1.6e-66
SQH90204.1|3522771_3523212_-	ninB protein	NA	K7P6U0	Enterobacteria_phage	97.9	1.0e-79
SQH90205.1|3523289_3525170_-	gp61	NA	Q5G8S8	Enterobacteria_phage	97.9	0.0e+00
SQH90206.1|3525166_3525274_-	Uncharacterised protein	NA	Q5G8S9	Enterobacteria_phage	94.1	2.4e-11
SQH90207.1|3525277_3525955_-	DNA-binding protein	NA	A0A0P0ZC04	Stx2-converting_phage	58.1	2.6e-58
SQH90208.1|3525951_3526095_-	Uncharacterised protein	NA	A0A2D1GLU0	Escherichia_phage	91.5	1.9e-16
SQH90209.1|3526117_3526408_-	Bacteriophage CII protein	NA	I6RSP4	Salmonella_phage	100.0	2.4e-45
SQH90210.1|3526538_3526748_-	CRO	NA	I6S1U2	Salmonella_phage	100.0	2.1e-35
SQH90211.1|3526857_3527511_+	cI repressor protein	NA	I6R0S2	Salmonella_phage	100.0	2.3e-128
SQH90212.1|3527535_3528408_+	P63C domain	NA	I6NRL3	Burkholderia_virus	28.8	1.3e-22
SQH90213.1|3528551_3528755_-	Uncharacterised protein	NA	A0A2H5BFH9	Salmonella_phage	97.0	2.3e-26
SQH90214.1|3529009_3529474_+	antitermination protein	NA	C6ZR44	Salmonella_phage	93.3	1.9e-57
SQH90215.1|3529552_3530077_+	pentapeptide repeat-containing protein	NA	I6S1T3	Salmonella_phage	85.2	2.4e-43
SQH90216.1|3530076_3530172_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90217.1|3530299_3530464_+	cIII protein family	NA	K7P848	Enterobacteria_phage	70.0	5.7e-12
SQH90218.1|3530448_3530601_+	Bacteriophage lambda Kil protein	NA	NA	NA	NA	NA
SQH90219.1|3530597_3530705_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90220.1|3530685_3530994_+	Uncharacterised protein	NA	K7PJM4	Enterobacteria_phage	99.0	2.5e-53
SQH90221.1|3530990_3531893_+	recombination and repair protein RecT	NA	K7PKG9	Enterobacteria_phage	87.8	5.7e-146
SQH90222.1|3531876_3532359_+	Siphovirus Gp157	NA	K7P6T5	Enterobacteria_phage	96.2	5.1e-77
SQH90223.1|3532701_3532872_+	prophage protein	NA	A0A0N7CAQ8	Salmonella_phage	96.4	1.5e-23
SQH90224.1|3532859_3533366_+	Eae protein	NA	A0A0N6WGF1	Salmonella_phage	69.0	4.3e-58
SQH90225.1|3533362_3533479_+	conserved hypothetical bacteriophage protein	NA	A0A1U8QWK2	Salmonella_phage	97.1	4.3e-14
SQH90226.1|3533475_3534108_+	Ead protein	NA	A0A0N7C1Y5	Escherichia_phage	55.6	4.6e-33
SQH90227.1|3534104_3534299_+	Uncharacterised protein	NA	A0A075B8E3	Enterobacteria_phage	96.9	1.3e-26
SQH90228.1|3534302_3534614_+	Gp38	NA	Q5G8V1	Enterobacteria_phage	63.5	5.5e-32
SQH90229.1|3534606_3535146_+	Eaa2	NA	A0A1V0E5M5	Salmonella_phage	91.5	6.4e-36
SQH90230.1|3535145_3535418_+	Uncharacterised protein	NA	A0A2H4FNB3	Salmonella_phage	100.0	6.9e-39
SQH90231.1|3535708_3536872_+|integrase	integrase	integrase	B9UDL9	Salmonella_phage	99.0	1.6e-225
3536886:3536932	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
>prophage 13
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	3566995	3627334	4907449	integrase,transposase,tRNA,protease	Bacillus_phage(33.33%)	54	3590866:3590905	3594227:3594266
SQH90264.1|3566995_3567913_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQH90265.1|3567909_3568362_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQH90266.1|3568362_3568779_-	copper efflux regulator	NA	NA	NA	NA	NA
SQH90267.1|3568888_3571390_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	6.7e-112
SQH90268.1|3571542_3572379_+	Secreted protein	NA	NA	NA	NA	NA
SQH90269.1|3573451_3573931_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQH90270.1|3574047_3575700_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQH90271.1|3575872_3577093_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQH90272.1|3577104_3577230_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90273.1|3577307_3578984_+	transport protein	NA	NA	NA	NA	NA
SQH90274.1|3579032_3580337_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQH90275.1|3580489_3581461_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQH90276.1|3581457_3582420_-	ferrochelatase	NA	NA	NA	NA	NA
SQH90277.1|3582604_3583249_-	adenylate kinase	NA	NA	NA	NA	NA
SQH90278.1|3583664_3585539_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQH90279.1|3585649_3586255_-	recombination protein RecR	NA	NA	NA	NA	NA
SQH90280.1|3586254_3586584_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQH90281.1|3588671_3589223_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQH90282.1|3589375_3589753_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQH90283.1|3589833_3590349_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQH90284.1|3590362_3590530_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH90285.1|3590599_3590896_+	Transposase_31	NA	NA	NA	NA	NA
3590866:3590905	attL	ATGTTCTTATGCAAAGAAAATGATTATGTGAAGTGCACAG	NA	NA	NA	NA
SQH90286.1|3590946_3591948_-|integrase	site-specific integrase/recombinase	integrase	A0A142F1N9	Bacillus_phage	23.3	8.9e-15
SQH90287.1|3591944_3592859_-	Tyrosine recombinase XerD	NA	S5W9T9	Leptospira_phage	24.9	4.3e-08
SQH90288.1|3592852_3594112_-|integrase	site-specific integrase/recombinase	integrase	NA	NA	NA	NA
SQH90289.1|3594287_3594944_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.9	2.6e-39
3594227:3594266	attR	CTGTGCACTTCACATAATCATTTTCTTTGCATAAGAACAT	NA	NA	NA	NA
SQH90290.1|3594985_3598348_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQH90291.1|3598466_3599120_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQH90292.1|3599261_3600455_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQH90293.1|3600477_3603627_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQH90294.1|3604122_3604497_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQH90295.1|3604524_3604743_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQH90296.1|3604921_3605473_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQH90297.1|3605590_3606061_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH90298.1|3606116_3606257_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQH90299.1|3606262_3606523_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH90300.1|3606747_3608298_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQH90301.1|3608606_3608918_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQH90302.1|3608950_3609520_-	lipoprotein	NA	NA	NA	NA	NA
SQH90303.1|3609734_3610595_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQH90304.1|3610694_3611981_-	ammonium transporter	NA	NA	NA	NA	NA
SQH90305.1|3612012_3612351_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQH90306.1|3612563_3614345_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.9	7.1e-39
SQH90307.1|3614337_3616110_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQH90308.1|3616150_3616609_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH90309.1|3616721_3617777_+	lyase	NA	NA	NA	NA	NA
SQH90310.1|3617826_3618645_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQH90311.1|3618744_3620445_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQH90312.1|3620509_3621205_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	9.3e-88
SQH90313.1|3621310_3621709_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQH90314.1|3621812_3622187_-	competence protein ComEA	NA	NA	NA	NA	NA
SQH90315.1|3622336_3624208_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQH90316.1|3624498_3624771_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQH90317.1|3624979_3627334_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
>prophage 14
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	3754349	3761809	4907449	integrase	Salmonella_phage(33.33%)	7	3754015:3754061	3757918:3757964
3754015:3754061	attL	ATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
SQH90431.1|3754349_3754712_+	translocase	NA	I1TED9	Salmonella_phage	98.3	6.6e-61
SQH90432.1|3754708_3755623_+	bactoprenol glucosyl transferase	NA	I1TED8	Salmonella_phage	93.1	2.1e-164
SQH90433.1|3755626_3757093_+	putative membrane protein	NA	NA	NA	NA	NA
SQH90434.1|3757425_3757905_+|integrase	Phage integrase	integrase	Q76H30	Enterobacteria_phage	94.3	6.6e-85
SQH90435.1|3758109_3759360_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	48.0	8.0e-98
3757918:3757964	attR	ATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
SQH90436.1|3759371_3760475_-	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
SQH90437.1|3760756_3761809_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
>prophage 15
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	4907449	4210237	4272573	4907449	integrase,protease,tRNA	Streptococcus_phage(33.33%)	54	4267815:4267832	4274121:4274138
SQH90838.1|4210237_4211497_+|integrase	site-specific integrase/recombinase	integrase	NA	NA	NA	NA
SQH90839.1|4211490_4212405_+	Tyrosine recombinase XerD	NA	S5W9T9	Leptospira_phage	24.9	4.3e-08
SQH90840.1|4212401_4213403_+|integrase	site-specific integrase/recombinase	integrase	A0A142F1N9	Bacillus_phage	23.3	8.9e-15
SQH90841.1|4213453_4213753_-	Transposase	NA	NA	NA	NA	NA
SQH90842.1|4214231_4215473_+	sugar transport protein	NA	NA	NA	NA	NA
SQH90843.1|4215559_4216831_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH90844.1|4217039_4218224_+	transporter, major facilitator family	NA	NA	NA	NA	NA
SQH90845.1|4219094_4219766_+	transporter gate domain-containing protein	NA	NA	NA	NA	NA
SQH90846.1|4219762_4220224_+	membrane protein	NA	NA	NA	NA	NA
SQH90847.1|4220236_4221409_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
SQH90848.1|4221527_4222436_+	transcriptional activator	NA	NA	NA	NA	NA
SQH90849.1|4222441_4223176_-	aspartate racemase	NA	NA	NA	NA	NA
SQH90850.1|4223414_4223861_-	Hemolysin-coregulated protein (uncharacterized)	NA	NA	NA	NA	NA
SQH90851.1|4224662_4225676_+|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH90852.1|4225676_4226402_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
SQH90853.1|4226946_4227474_+	dienelactone hydrolase	NA	NA	NA	NA	NA
SQH90854.1|4227470_4227839_-	domain of uncharacterised function superfamily	NA	NA	NA	NA	NA
SQH90855.1|4228136_4229048_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH90856.1|4229399_4230008_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH90857.1|4230061_4230253_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90858.1|4230495_4230753_+	protein YjhX 2	NA	NA	NA	NA	NA
SQH90859.1|4230763_4232389_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQH90860.1|4232947_4233664_+	Probable transcriptional regulatory protein YeeN	NA	NA	NA	NA	NA
SQH90861.1|4233605_4233713_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90862.1|4233865_4234015_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90863.1|4234153_4234297_+	molybdopterin-guanine dinucleotide biosynthesis protein MobA	NA	NA	NA	NA	NA
SQH90864.1|4234483_4235092_+	membrane protein	NA	NA	NA	NA	NA
SQH90865.1|4235088_4235691_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH90866.1|4235702_4239344_+	DNA repair ATPase	NA	NA	NA	NA	NA
SQH90867.1|4239389_4243061_+	restriction enzyme, methylase subunit	NA	NA	NA	NA	NA
SQH90868.1|4243060_4244149_+	spermidine/putrescine ABC transporter ATPase	NA	K7PHD1	Enterobacteria_phage	25.0	9.1e-05
SQH90869.1|4244135_4244948_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH90870.1|4244944_4247548_+	alkaline phosphatase	NA	NA	NA	NA	NA
SQH90871.1|4247558_4249643_+|protease	ATP-dependent Lon protease	protease	NA	NA	NA	NA
SQH90872.1|4249681_4250773_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90873.1|4251173_4252181_-	restriction endonuclease	NA	NA	NA	NA	NA
SQH90874.1|4252259_4255775_-	superfamily I DNA helicase	NA	NA	NA	NA	NA
SQH90875.1|4255953_4256421_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	39.5	3.4e-17
SQH90876.1|4256855_4257164_-	cytotoxic protein CcdB	NA	NA	NA	NA	NA
SQH90877.1|4257166_4257406_-	antitoxin protein LetA	NA	NA	NA	NA	NA
SQH90878.1|4258513_4259389_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90879.1|4259464_4260736_-	DNA cytosine methylase	NA	Q6DMX0	Streptococcus_phage	53.0	4.8e-106
SQH90880.1|4260862_4262266_+	5-methylcytosine-specific restriction enzyme B	NA	M1NSM1	Streptococcus_phage	34.7	1.2e-49
SQH90881.1|4262291_4263566_+	LlaJI restriction endonuclease	NA	NA	NA	NA	NA
SQH90882.1|4263761_4264343_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90883.1|4264326_4264545_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90884.1|4264833_4265211_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90885.1|4265216_4266485_+	relaxase	NA	NA	NA	NA	NA
SQH90886.1|4266790_4267456_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90887.1|4267514_4267928_-	membrane protein	NA	NA	NA	NA	NA
4267815:4267832	attL	ATATGATTGTTCTATAAT	NA	NA	NA	NA
SQH90888.1|4268025_4268424_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH90889.1|4268424_4270056_-	DNA-binding protein	NA	NA	NA	NA	NA
SQH90890.1|4270055_4271366_-|integrase	integrase	integrase	NA	NA	NA	NA
SQH90891.1|4271367_4272573_-|integrase	integrase	integrase	NA	NA	NA	NA
4274121:4274138	attR	ATTATAGAACAATCATAT	NA	NA	NA	NA
