The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483458	Haemophilus haemolyticus strain NCTC10839 genome assembly, chromosome: 1	1934644	117463	125905	1934644		Moraxella_phage(33.33%)	13	NA	NA
SQH96274.1|117463_120271_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	32.7	8.7e-76
SQH96275.1|120282_120597_+	3-hydroxyanthranilate 3,4-dioxygenase	NA	NA	NA	NA	NA
SQH96276.1|120615_121920_+	Serine dehydratase alpha chain	NA	NA	NA	NA	NA
SQH96277.1|122035_122797_-	heme oxygenase, HugZ family	NA	NA	NA	NA	NA
SQH96278.1|122783_123173_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH96279.1|123183_123483_-	Uncharacterised protein	NA	A0A0S4L7B4	Pseudomonas_phage	38.7	1.1e-10
SQH96280.1|123479_123632_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH96281.1|124008_124353_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH96282.1|124387_124615_+	Uncharacterised protein	NA	A0A0R6PI79	Moraxella_phage	48.6	1.8e-11
SQH96283.1|124614_124887_+	Uncharacterised protein	NA	A0A0R6PI79	Moraxella_phage	53.8	8.5e-13
SQH96284.1|124891_125119_+	Excalibur calcium-binding domain	NA	Q19UP2	Mannheimia_phage	65.0	2.5e-10
SQH96285.1|125134_125617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH96286.1|125710_125905_+	Uncharacterised protein	NA	F6MIJ9	Haemophilus_phage	65.4	7.9e-13
>prophage 2
LS483458	Haemophilus haemolyticus strain NCTC10839 genome assembly, chromosome: 1	1934644	649168	679258	1934644	head,portal,capsid,tail,protease,terminase	uncultured_Caudovirales_phage(58.33%)	28	NA	NA
SQH96771.1|649168_649747_+|protease	Rhomboid protease glpG	protease	NA	NA	NA	NA
SQH96772.1|649776_650529_+	Glycerol-3-phosphate regulon repressor	NA	NA	NA	NA	NA
SQH96773.1|650656_651409_+	Probable phospholipid-binding lipoprotein mlaA precursor	NA	NA	NA	NA	NA
SQH96774.1|651466_651856_+	RutC family protein HI_0719	NA	NA	NA	NA	NA
SQH96775.1|652024_652876_+	Protease HtpX	NA	NA	NA	NA	NA
SQH96776.1|652920_653160_-	Sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	66.7	4.7e-07
SQH96777.1|653276_653897_+	IMPACT family member yigZ	NA	A0A1X9I5T8	Streptococcus_phage	35.0	1.3e-24
SQH96778.1|653899_655363_+	Trk system potassium uptake protein trkG	NA	NA	NA	NA	NA
SQH96779.1|661397_662537_+	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
SQH96780.1|662546_663458_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
SQH96781.1|663487_664330_-	Divergent polysaccharide deacetylase	NA	NA	NA	NA	NA
SQH96782.1|664329_665562_-	Septal ring factor	NA	A0A292GJG6	Xanthomonas_phage	40.2	3.4e-08
SQH96783.1|665737_666421_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
SQH96784.1|666498_667101_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH96785.1|667186_667399_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH96786.1|667573_668710_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
SQH96787.1|668687_668960_+	Probable Fe(2+)-trafficking protein	NA	NA	NA	NA	NA
SQH96788.1|668974_670051_+	Endo-type membrane-bound lytic murein transglycosylase A precursor	NA	NA	NA	NA	NA
SQH96789.1|671360_671795_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	52.6	1.3e-26
SQH96790.1|671942_672551_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	68.8	7.2e-76
SQH96791.1|672596_673163_+|head,protease	phage prohead protease, HK97 family	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	64.6	4.3e-51
SQH96792.1|673164_674397_+|portal	phage portal protein, HK97 family	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	63.3	1.7e-145
SQH96793.1|674380_674725_+|head,tail	Bacteriophage head-tail adaptor	head,tail	NA	NA	NA	NA
SQH96794.1|674711_675020_+	uncharacterized phage protein (possible DNA packaging)	NA	A0A2H4JD08	uncultured_Caudovirales_phage	49.0	1.3e-17
SQH96795.1|675501_675876_+|terminase	Phage terminase, small subunit	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	64.9	1.7e-35
SQH96796.1|675883_677551_+|terminase	Phage terminase-like protein, large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	70.0	7.1e-243
SQH96797.1|677702_678146_+	Uncharacterized phage-associated protein	NA	D0UIM3	Aggregatibacter_phage	49.0	3.5e-32
SQH96798.1|678148_679258_+	GTP pyrophosphokinase ywaC	NA	A0A1B0VBT5	Salmonella_phage	28.0	1.4e-21
>prophage 3
LS483458	Haemophilus haemolyticus strain NCTC10839 genome assembly, chromosome: 1	1934644	1443241	1497822	1934644	holin,portal,tail,tRNA,protease	Mannheimia_phage(43.59%)	76	NA	NA
SQH97510.1|1443241_1443718_-|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK	tRNA	NA	NA	NA	NA
SQH97511.1|1443776_1444730_+	USG-1 protein	NA	NA	NA	NA	NA
SQH97512.1|1444755_1445112_+	Uncharacterized conserved protein involved in intracellular sulfur reduction	NA	NA	NA	NA	NA
SQH97513.1|1445297_1446323_-	Restriction enzyme BgcI subunit beta	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	61.5	1.2e-35
SQH97514.1|1446334_1448395_-	Restriction enzyme BgcI subunit alpha	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	34.0	5.8e-85
SQH97515.1|1448634_1449444_-	Tryptophan synthase alpha chain	NA	NA	NA	NA	NA
SQH97516.1|1449443_1450640_-	Tryptophan synthase beta chain	NA	NA	NA	NA	NA
SQH97517.1|1450657_1451416_-	NADP-dependent 3-hydroxy acid dehydrogenase YdfG	NA	NA	NA	NA	NA
SQH97518.1|1451555_1452392_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA	NA
SQH97519.1|1452590_1453520_-	Universal stress protein E homolog	NA	NA	NA	NA	NA
SQH97520.1|1453653_1454427_-	Fumarate and nitrate reduction regulatory protein	NA	NA	NA	NA	NA
SQH97521.1|1454519_1454612_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97522.1|1454828_1455920_-	site-specific tyrosine recombinase XerC	NA	A0A077KGX2	Edwardsiella_phage	35.5	9.6e-55
SQH97523.1|1456278_1456500_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97524.1|1456570_1456693_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97525.1|1456695_1457154_-	Uncharacterised protein	NA	A0A0M3LPG0	Mannheimia_phage	37.1	1.4e-20
SQH97526.1|1457219_1457585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97527.1|1457594_1457819_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97528.1|1457818_1458469_-	Uncharacterised protein	NA	A0A0M3LP90	Mannheimia_phage	70.6	9.0e-85
SQH97529.1|1458443_1459391_-	Uncharacterised protein	NA	A0A2H4JAZ0	uncultured_Caudovirales_phage	66.7	2.5e-83
SQH97530.1|1459403_1459697_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97531.1|1459680_1459896_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97532.1|1459895_1460195_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97533.1|1460290_1460941_-	Phage anti-repressor protein	NA	A0A0M3LQ72	Mannheimia_phage	62.7	9.4e-74
SQH97534.1|1462472_1462640_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97535.1|1462670_1463105_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97536.1|1463104_1463587_-	Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters	NA	K7PJX6	Enterobacterial_phage	41.3	2.0e-20
SQH97537.1|1463600_1463855_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97538.1|1463928_1464594_-	LexA repressor	NA	A0A0M3LSL8	Mannheimia_phage	52.4	9.7e-42
SQH97539.1|1464693_1464933_+	Uncharacterised protein	NA	A0A2I6PIE5	Escherichia_phage	49.2	7.0e-11
SQH97540.1|1464993_1465428_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97541.1|1465480_1466188_+	Phage anti-repressor protein	NA	Q7Y5W2	Haemophilus_phage	56.3	3.2e-51
SQH97542.1|1466184_1466907_+	Uncharacterised protein	NA	D0UIL5	Aggregatibacter_phage	68.8	7.7e-61
SQH97543.1|1466903_1467524_+	Replication protein P	NA	A0A0M3LS65	Mannheimia_phage	38.5	2.2e-27
SQH97544.1|1467520_1467745_+	Uncharacterised protein	NA	A0A0M3LR43	Mannheimia_phage	50.0	1.7e-11
SQH97545.1|1467741_1468668_+	Type I restriction-modification system methyltransferase subunit	NA	A0A0M3LQ47	Mannheimia_phage	57.5	1.5e-96
SQH97546.1|1468664_1469081_+	NinB protein	NA	Q7Y5V7	Haemophilus_phage	85.5	8.6e-65
SQH97547.1|1469081_1469171_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97548.1|1469170_1469716_+	Bacteriophage Lambda NinG protein	NA	D0UIK8	Aggregatibacter_phage	63.5	1.0e-57
SQH97549.1|1469716_1470235_+	Phage antitermination protein Q	NA	NA	NA	NA	NA
SQH97550.1|1470492_1470852_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
SQH97551.1|1470817_1471420_+	Predicted chitinase	NA	Q7Y5V0	Haemophilus_phage	54.9	8.7e-58
SQH97552.1|1471412_1471736_+	Protein of uncharacterised function (DUF2570)	NA	Q7Y5U9	Haemophilus_phage	63.6	1.4e-25
SQH97553.1|1471928_1472192_+	Uncharacterised protein	NA	Q776V9	Haemophilus_phage	70.9	2.4e-28
SQH97554.1|1472524_1472998_+	Protein of uncharacterised function (DUF1441)	NA	K7PJY2	Enterobacterial_phage	52.3	7.1e-39
SQH97555.1|1473000_1475130_+|tail	Bacteriophage tail assembly protein	tail	K7PH52	Enterobacterial_phage	67.3	6.7e-278
SQH97556.1|1475253_1475781_+	Uncharacterized phage-encoded protein	NA	A5VW78	Enterobacteria_phage	43.3	2.0e-29
SQH97557.1|1475796_1476042_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97558.1|1476045_1477569_+|portal	phage portal protein, lambda family	portal	S5MW34	Escherichia_phage	57.9	8.4e-158
SQH97559.1|1477540_1479544_+|protease	ATP-dependent Clp protease proteolytic subunit 2	protease	A0A1W6JT88	Pseudomonas_phage	57.4	5.6e-202
SQH97560.1|1479622_1479946_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQH97561.1|1479926_1480232_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97562.1|1480231_1480777_+|tail	Prophage minor tail protein Z (GPZ)	tail	K7PMB7	Enterobacterial_phage	41.2	3.6e-26
SQH97563.1|1480773_1481172_+|tail	Phage minor tail protein U	tail	K7PJP5	Enterobacteria_phage	34.8	4.8e-12
SQH97564.1|1481171_1481675_+	Uncharacterised protein	NA	K7PKX6	Enterobacterial_phage	52.9	2.9e-38
SQH97565.1|1481677_1482067_+|tail	phage minor tail protein G	tail	NA	NA	NA	NA
SQH97566.1|1482129_1482390_+|tail	phage tail assembly protein T	tail	NA	NA	NA	NA
SQH97567.1|1482376_1484752_+	Uncharacterised protein	NA	A0A0M3LS69	Mannheimia_phage	43.2	1.7e-16
SQH97568.1|1484756_1485101_+	Phage-related protein	NA	A0A0M3LQW6	Mannheimia_phage	37.0	5.6e-09
SQH97569.1|1485183_1485717_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97570.1|1486023_1486881_+	Phage anti-repressor protein	NA	A0A0M3LR56	Mannheimia_phage	82.8	1.8e-56
SQH97571.1|1486940_1487654_+|tail	phage minor tail protein L	tail	A0A0M3LSQ5	Mannheimia_phage	64.7	8.1e-87
SQH97572.1|1487656_1488391_+	NlpC/P60 family	NA	A0A0M3LQI5	Mannheimia_phage	59.8	3.0e-84
SQH97573.1|1488333_1488918_+|tail	Phage-related protein, tail component	tail	A0A0M3LQ39	Mannheimia_phage	54.1	2.8e-53
SQH97574.1|1488928_1492882_+	Domain of uncharacterised function (DUF1983)	NA	A0A0M3LQG1	Mannheimia_phage	60.8	1.2e-14
SQH97575.1|1492890_1493238_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97576.1|1493237_1493894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97577.1|1493934_1494555_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97578.1|1494547_1495009_+	Uncharacterised protein	NA	A0A0R6PFI9	Moraxella_phage	47.2	3.8e-29
SQH97579.1|1495045_1495339_+	Uncharacterised protein	NA	A0A0M3LSV5	Mannheimia_phage	67.0	4.9e-30
SQH97580.1|1495393_1495771_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97581.1|1495760_1495898_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97582.1|1495907_1496273_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97583.1|1496275_1496938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH97584.1|1496985_1497495_-	Uncharacterised protein	NA	A0A0M3LSW2	Mannheimia_phage	52.4	6.9e-48
SQH97585.1|1497537_1497822_-	Uncharacterised protein	NA	A0A0M3LPE1	Mannheimia_phage	47.5	2.2e-11
