The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	1099828	1105562	4626672	integrase	Enterobacteria_phage(50.0%)	7	1102690:1102703	1105764:1105777
SQI01425.1|1099828_1099969_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	78.6	9.1e-11
SQI01426.1|1100009_1100591_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	90.9	5.1e-79
SQI01427.1|1100809_1101262_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	60.3	2.3e-39
SQI01428.1|1101635_1102823_+	Uncharacterized conserved protein	NA	A0A0R6PKN1	Moraxella_phage	25.7	1.2e-10
1102690:1102703	attL	AAATACAATATGAA	NA	NA	NA	NA
SQI01429.1|1102833_1103367_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI01430.1|1103392_1104589_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.4	3.8e-105
SQI01431.1|1105361_1105562_+	phage regulatory protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	36.4	1.1e-06
1105764:1105777	attR	AAATACAATATGAA	NA	NA	NA	NA
>prophage 2
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	1654859	1664031	4626672	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQI01914.1|1654859_1655807_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.0	3.7e-10
SQI01915.1|1655790_1656522_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI01916.1|1656502_1656610_-	membrane protein	NA	NA	NA	NA	NA
SQI01917.1|1656669_1657401_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI01918.1|1657623_1659309_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQI01919.1|1659305_1660025_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI01920.1|1660071_1660539_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	89.7	2.0e-73
SQI01921.1|1660595_1661126_-	lipoprotein	NA	NA	NA	NA	NA
SQI01922.1|1661297_1661756_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
SQI01923.1|1661997_1664031_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	1900505	1950289	4626672	tRNA,integrase,terminase,transposase	Enterobacteria_phage(15.79%)	53	1929629:1929643	1940528:1940542
SQI02289.1|1900505_1902239_-|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.4	4.9e-85
SQI02290.1|1902475_1903045_+	Protein yecM	NA	NA	NA	NA	NA
SQI02291.1|1903064_1903811_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
SQI02292.1|1904046_1905018_-|tRNA	tRNA (5-methoxyuridine) 34 synthase	tRNA	NA	NA	NA	NA
SQI02294.1|1905014_1905758_-|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	tRNA	F5B419	Synechococcus_phage	30.9	5.4e-25
SQI02295.1|1905798_1906194_-	membrane protein	NA	NA	NA	NA	NA
SQI02296.1|1906246_1907065_-	Protein of uncharacterised function DUF72	NA	Q859D1	Escherichia_coli_phage	80.3	4.5e-57
SQI02297.1|1907061_1907628_-	putative isochorismatase hydrolase	NA	NA	NA	NA	NA
SQI02298.1|1907952_1909725_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQI02300.1|1909827_1910280_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQI02301.1|1910309_1911050_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
SQI02302.1|1911086_1911608_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
SQI02303.1|1911609_1912209_-	protein yebB	NA	NA	NA	NA	NA
SQI02304.1|1912529_1913111_+	membrane protein	NA	NA	NA	NA	NA
SQI02305.1|1913469_1914081_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA	NA
SQI02306.1|1914089_1915100_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	25.9	1.8e-07
SQI02308.1|1915178_1915964_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
SQI02309.1|1915960_1916716_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
SQI02310.1|1916737_1917739_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
SQI02311.1|1917754_1919074_+	Cell wall endopeptidase family M23/M37	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
SQI02312.1|1919190_1920159_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
SQI02313.1|1920159_1920852_-|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQI02315.1|1921013_1921415_-|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQI02316.1|1921549_1922992_-	pyruvate kinase A	NA	NA	NA	NA	NA
SQI02317.1|1923115_1923985_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQI02318.1|1924326_1925802_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.0e-79
SQI02320.1|1926036_1927848_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQI02321.1|1927885_1928527_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQI02322.1|1928626_1929805_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
1929629:1929643	attL	AATGACGTGTGAACG	NA	NA	NA	NA
SQI02323.1|1929935_1930226_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
SQI02324.1|1930293_1930647_+	protein YebF	NA	NA	NA	NA	NA
SQI02325.1|1930740_1931400_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQI02326.1|1931612_1933664_+	oligopeptidase	NA	NA	NA	NA	NA
SQI02327.1|1933700_1934399_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
SQI02328.1|1934422_1935079_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQI02330.1|1935186_1935417_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQI02331.1|1935554_1935929_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQI02332.1|1935929_1936805_+	membrane protein	NA	NA	NA	NA	NA
SQI02333.1|1936821_1937175_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQI02334.1|1937557_1938637_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	1.5e-100
SQI02335.1|1938633_1939905_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	66.7	1.3e-55
SQI02337.1|1940054_1940588_+	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
1940528:1940542	attR	AATGACGTGTGAACG	NA	NA	NA	NA
SQI02338.1|1940856_1941024_-	lytic enzyme	NA	NA	NA	NA	NA
SQI02339.1|1941326_1941983_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	58.5	4.3e-42
SQI02340.1|1942002_1942377_+|terminase	phage terminase large subunit	terminase	Q8VNN7	Enterobacteria_phage	83.7	2.6e-60
SQI02341.1|1942369_1943707_+	Tail Fiber Protein	NA	E5G6P0	Salmonella_phage	52.1	9.9e-78
SQI02342.1|1946141_1946264_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI02343.1|1946712_1947327_-	disulfide bond formation protein	NA	NA	NA	NA	NA
SQI02344.1|1947336_1947495_-	membrane protein	NA	NA	NA	NA	NA
SQI02346.1|1947627_1948542_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
SQI02347.1|1949333_1949858_-	fimbriae usher protein	NA	NA	NA	NA	NA
SQI02348.1|1949874_1950042_+	error-prone repair: component of DNA polymerase V with UmuD'	NA	I6RSM4	Salmonella_phage	90.0	4.3e-07
SQI02349.1|1949980_1950289_+|transposase	transposase, Mutator family protein	transposase	A0A218MNI5	uncultured_virus	62.5	3.0e-14
>prophage 4
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	2582702	2590972	4626672	transposase	Escherichia_phage(42.86%)	9	NA	NA
SQI03555.1|2582702_2582942_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
SQI03557.1|2583152_2583317_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI03559.1|2583814_2584624_+	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	1.6e-62
SQI03560.1|2584696_2585074_+	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
SQI03561.1|2585222_2585765_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
SQI03562.1|2585948_2586677_-	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
SQI03563.1|2586693_2587107_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
SQI03565.1|2588151_2589276_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI03567.1|2589721_2590972_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.0e-19
>prophage 5
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	2744722	2821610	4626672	tRNA,tail,holin,protease,terminase,head	Salmonella_phage(74.51%)	87	NA	NA
SQI03872.1|2744722_2745052_+|tRNA	tRNA 2-thiouridine synthesizing protein E	tRNA	NA	NA	NA	NA
SQI03874.1|2745048_2745330_-	acylphosphatase	NA	NA	NA	NA	NA
SQI03875.1|2745378_2746167_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI03877.1|2746183_2746732_-	kinase inhibitor	NA	NA	NA	NA	NA
SQI03878.1|2746946_2748158_+	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA	NA
SQI03880.1|2748215_2748533_+	hemimethylated DNA binding protein YccV	NA	NA	NA	NA	NA
SQI03881.1|2748577_2748991_-	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA	NA
SQI03882.1|2749164_2749827_+	UPF0319 protein YccT precursor	NA	NA	NA	NA	NA
SQI03883.1|2749921_2750380_+	methylglyoxal synthase	NA	NA	NA	NA	NA
SQI03884.1|2750415_2752470_-	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
SQI03885.1|2752593_2753040_+	Inner membrane protein YccF	NA	NA	NA	NA	NA
SQI03886.1|2753058_2755212_+	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA	NA
SQI03887.1|2755198_2755804_-	DNA transformation protein TfoX	NA	NA	NA	NA	NA
SQI03888.1|2756020_2756530_+	cell division inhibitor	NA	NA	NA	NA	NA
SQI03889.1|2756886_2757939_+	outer membrane protein A	NA	NA	NA	NA	NA
SQI03891.1|2758010_2758463_-	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
SQI03894.1|2758648_2760409_+|protease	protease	protease	NA	NA	NA	NA
SQI03896.1|2760477_2760996_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA	NA
SQI03898.1|2761518_2762082_-	lipoprotein	NA	NA	NA	NA	NA
SQI03900.1|2762078_2763719_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
SQI03903.1|2763723_2764977_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
SQI03905.1|2764991_2766899_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
SQI03907.1|2766911_2769020_-	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA	NA
SQI03909.1|2769118_2770228_+	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA	NA
SQI03912.1|2770224_2770767_-	Z-ring-associated protein C	NA	NA	NA	NA	NA
SQI03915.1|2770933_2771944_-	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
SQI03917.1|2772151_2774764_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.5	1.8e-19
SQI03920.1|2775190_2775397_+	MsgA	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
SQI03923.1|2776391_2776673_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03926.1|2777152_2777875_+	type III secretion protein SopE	NA	NA	NA	NA	NA
SQI03929.1|2778070_2778478_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	78.9	6.1e-55
SQI03931.1|2778484_2779915_-	Fels-2 prophage Pin	NA	A0A1B0V7G4	Salmonella_phage	81.5	1.3e-205
SQI03934.1|2780319_2780577_-	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	92.9	1.6e-40
SQI03937.1|2780573_2781773_-	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	5.0e-214
SQI03940.1|2781773_2782127_-	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	96.6	2.3e-58
SQI03944.1|2782126_2782879_-	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	70.2	2.0e-91
SQI03946.1|2783315_2784089_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03947.1|2784230_2784578_-	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	67.9	5.8e-22
SQI03948.1|2784574_2785642_-	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	90.7	5.5e-172
SQI03949.1|2785644_2785947_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	99.0	2.7e-52
SQI03950.1|2785946_2786522_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
SQI03951.1|2786521_2788531_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	98.5	0.0e+00
SQI03952.1|2788708_2789161_-	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	100.0	5.1e-79
SQI03954.1|2789164_2789605_-	bacteriophage protein	NA	A0A0M5M1K6	Salmonella_phage	100.0	9.4e-78
SQI03955.1|2789615_2790767_-	hypothetical prophage protein	NA	A0A0M4RD26	Salmonella_phage	100.0	2.5e-215
SQI03956.1|2790769_2791336_-	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	99.5	1.8e-105
SQI03957.1|2791310_2791700_-	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	100.0	3.2e-69
SQI03958.1|2791686_2792241_-	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.4e-94
SQI03960.1|2792237_2792657_-	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	1.4e-70
SQI03961.1|2792610_2792979_-	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
SQI03962.1|2793020_2793962_-	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
SQI03963.1|2793973_2794471_-	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
SQI03964.1|2794475_2795708_-|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
SQI03965.1|2795722_2796331_-	putative bacteriophage protein	NA	A0A0M4REK0	Salmonella_phage	96.0	6.4e-109
SQI03967.1|2796344_2797814_-	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	1.3e-280
SQI03968.1|2797813_2798047_-|terminase	putative prophage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	64.4	1.4e-19
SQI03969.1|2798034_2799210_-|terminase	putative prophage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.3	1.4e-152
SQI03970.1|2799175_2799928_-|terminase	putative prophage terminase small subunit	terminase	G8C7P2	Escherichia_phage	73.3	9.0e-12
SQI03971.1|2799998_2800181_-	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA	NA
SQI03972.1|2800405_2800879_-	putative endopeptidase	NA	A0A0M4RD57	Salmonella_phage	93.0	3.2e-71
SQI03974.1|2800875_2801328_-	Lysozyme	NA	A0A0M4R365	Salmonella_phage	98.7	4.6e-80
SQI03975.1|2801311_2801647_-|holin	bacteriophage holin	holin	A0A0M3ULK9	Salmonella_phage	100.0	4.1e-57
SQI03976.1|2802129_2802603_+	GogA	NA	Q9MBM2	Phage_Gifsy-1	100.0	2.4e-87
SQI03977.1|2803495_2804185_-	Gifsy-1 prophage RegQ	NA	I6PDF8	Cronobacter_phage	52.4	1.1e-59
SQI03978.1|2804181_2804322_-	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
SQI03979.1|2804318_2804930_-	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.5	2.7e-91
SQI03981.1|2804932_2805139_-	Phage protein	NA	S4TNP0	Salmonella_phage	98.5	4.6e-35
SQI03982.1|2805138_2805741_-	bacteriophage protein	NA	S4TTI0	Salmonella_phage	100.0	2.6e-110
SQI03983.1|2805803_2806052_-	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQI03984.1|2806586_2807093_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03986.1|2807395_2807773_-	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	37.6	3.9e-16
SQI03988.1|2808239_2809247_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	69.9	2.7e-128
SQI03991.1|2809294_2809789_-	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQI03992.1|2809775_2810030_-	CRO	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
SQI03993.1|2810194_2810527_+	putative regulator	NA	A0A0M4R5D1	Salmonella_phage	32.7	5.6e-06
SQI03994.1|2810825_2811014_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03995.1|2810958_2811138_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03996.1|2811398_2811674_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI03998.1|2811678_2811885_+	prophage Kil protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
SQI04001.1|2811960_2812296_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI04004.1|2812436_2815616_+	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	68.1	0.0e+00
SQI04063.1|2815626_2816736_+	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	100.0	7.1e-207
SQI04065.1|2816778_2817018_+	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
SQI04067.1|2817058_2817307_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
SQI04069.1|2817351_2818644_+	Integrase	NA	S4TSP2	Salmonella_phage	99.8	2.2e-252
SQI04071.1|2818838_2820041_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQI04073.1|2820209_2821610_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
>prophage 6
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	3247011	3306246	4626672	tRNA,protease,transposase	Bacillus_phage(23.08%)	53	NA	NA
SQI06294.1|3247011_3247929_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI06295.1|3247925_3248378_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI06296.1|3248378_3248795_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI06297.1|3248904_3251406_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.1	1.5e-111
SQI06298.1|3251558_3252386_+	Secreted protein	NA	NA	NA	NA	NA
SQI06299.1|3253466_3253946_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI06300.1|3254062_3255715_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI06301.1|3255887_3257108_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI06302.1|3257119_3257245_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI06303.1|3257322_3258999_+	transport protein	NA	NA	NA	NA	NA
SQI06304.1|3259047_3260352_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI06305.1|3260504_3261476_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQI06306.1|3261472_3262435_-	ferrochelatase	NA	NA	NA	NA	NA
SQI06307.1|3262662_3263307_-	adenylate kinase	NA	NA	NA	NA	NA
SQI06308.1|3263664_3265539_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQI06309.1|3265649_3266255_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI06310.1|3266254_3266584_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI06311.1|3268671_3269223_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI06312.1|3269375_3269753_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI06313.1|3269833_3270349_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI06314.1|3270362_3270530_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI06315.1|3270599_3270986_+	Transposase_31	NA	Q2A0A7	Sodalis_phage	57.9	6.2e-33
SQI06316.1|3271010_3271523_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	46.8	4.0e-19
SQI06317.1|3271564_3274927_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI06318.1|3275045_3275699_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI06319.1|3275840_3277034_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI06320.1|3277056_3280206_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI06321.1|3280701_3281076_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI06322.1|3281103_3281322_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI06323.1|3281500_3282052_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI06324.1|3282169_3282640_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI06325.1|3282695_3282836_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQI06326.1|3282841_3283102_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI06327.1|3283362_3284877_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI06328.1|3285185_3285497_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI06329.1|3285529_3286099_-	lipoprotein	NA	NA	NA	NA	NA
SQI06330.1|3286313_3287174_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI06331.1|3287273_3288560_-	ammonium transporter	NA	NA	NA	NA	NA
SQI06332.1|3288591_3288930_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI06333.1|3289142_3290924_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	2.1e-38
SQI06334.1|3290916_3292689_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.7	4.7e-51
SQI06335.1|3292729_3293188_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI06336.1|3293300_3294356_+	lyase	NA	NA	NA	NA	NA
SQI06337.1|3294405_3295224_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI06338.1|3295324_3297025_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI06339.1|3297089_3297785_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	1.2e-87
SQI06340.1|3297890_3298289_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI06341.1|3298392_3298767_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI06342.1|3298916_3300788_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI06343.1|3301078_3301351_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI06344.1|3301559_3303914_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQI06345.1|3304099_3305371_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQI06346.1|3305622_3306246_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 7
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	3429570	3446464	4626672	integrase,transposase	Escherichia_phage(40.0%)	21	3423298:3423311	3432101:3432114
3423298:3423311	attL	TTCTGCCTTCATTA	NA	NA	NA	NA
SQI06458.1|3429570_3430050_+|integrase	Phage integrase	integrase	Q76H30	Enterobacteria_phage	94.9	3.0e-85
SQI06459.1|3430296_3431622_+|integrase	prophage integrase	integrase	A0A221SAN4	Ralstonia_phage	28.4	9.0e-07
SQI06460.1|3431738_3432185_+	Uncharacterised protein	NA	NA	NA	NA	NA
3432101:3432114	attR	TTCTGCCTTCATTA	NA	NA	NA	NA
SQI06461.1|3432181_3432406_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI06462.1|3432524_3433379_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI06463.1|3433405_3433519_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI06464.1|3433535_3434105_+	multiple promoter invertase	NA	NA	NA	NA	NA
SQI06465.1|3434376_3435003_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI06466.1|3435088_3436102_-	adenosine deaminase	NA	NA	NA	NA	NA
SQI06467.1|3436098_3437058_-	ribonucleoside hydrolase 2	NA	NA	NA	NA	NA
SQI06468.1|3437284_3437968_+	DNA-binding transcriptional activator YeiL	NA	NA	NA	NA	NA
SQI06469.1|3437945_3438254_+	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA	NA	NA	NA	NA
SQI06470.1|3438517_3438784_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI06471.1|3439041_3439950_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI06472.1|3440258_3440777_+	Protein of uncharacterised function (DUF2975)	NA	NA	NA	NA	NA
SQI06473.1|3440776_3440986_+	Predicted transcriptional regulator	NA	NA	NA	NA	NA
SQI06474.1|3441172_3441721_+|transposase	transposase	transposase	NA	NA	NA	NA
SQI06475.1|3441730_3442003_+	Insertion element iso-IS1N protein insA	NA	A0A0U2RK18	Escherichia_phage	88.1	1.5e-38
SQI06476.1|3442014_3442425_+	insertion element iso-IS1n protein insB	NA	A0A0U2RK18	Escherichia_phage	91.9	1.8e-70
SQI06477.1|3443831_3445103_-	Transposase and inactivated derivatives, IS30 family	NA	NA	NA	NA	NA
SQI06478.1|3445258_3446464_-|transposase	transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.0	2.4e-83
>prophage 8
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	4626672	4378937	4414609	4626672	capsid,tail,portal,plate,holin,integrase,terminase	Salmonella_phage(53.66%)	47	4378730:4378776	4409984:4410030
4378730:4378776	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQI07300.1|4378937_4379345_+	Uncharacterised protein	NA	S4TTB4	Salmonella_phage	100.0	1.6e-71
SQI07301.1|4379395_4379614_-	DNA-binding transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
SQI07302.1|4379691_4380861_-	phage late control gene D	NA	S4TRX8	Salmonella_phage	99.0	1.8e-208
SQI07303.1|4380857_4381127_-	gp25	NA	S4TUC3	Salmonella_phage	98.9	3.9e-42
SQI07304.1|4381126_4381342_-	gp25	NA	A0A218M4I2	Erwinia_phage	86.5	1.1e-18
SQI07305.1|4381356_4383798_-|tail	phage tail tape measure protein	tail	S4TP64	Salmonella_phage	95.6	0.0e+00
SQI07306.1|4383942_4384278_-|tail	phage tail protein	tail	S4TTB2	Salmonella_phage	100.0	1.4e-52
SQI07307.1|4384340_4384859_-|tail	major tail sheath protein FII	tail	S4TNZ0	Salmonella_phage	100.0	6.5e-94
SQI07308.1|4384874_4386062_-|tail	bacteriophage major tail sheath protein FI	tail	Q6K1H0	Salmonella_virus	99.5	2.9e-222
SQI07309.1|4386764_4388507_-	gp19	NA	A0A0M3ULF6	Salmonella_phage	99.0	1.3e-271
SQI07310.1|4388517_4389048_-|tail	orf38; p2 I-like tail protein	tail	S4TTA8	Salmonella_phage	100.0	9.2e-104
SQI07311.1|4389040_4389949_-|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	99.7	1.3e-161
SQI07312.1|4389955_4390303_-|plate	baseplate assembly protein	plate	S4TRW8	Salmonella_phage	99.1	7.2e-57
SQI07313.1|4390299_4390941_-|tail	phage tail protein	tail	Q6K1H6	Salmonella_virus	99.1	2.4e-114
SQI07314.1|4391093_4391963_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI07315.1|4392092_4392545_-|tail	tail completion protein S	tail	A0A0M3UL83	Salmonella_phage	91.9	4.2e-65
SQI07316.1|4392537_4393005_-|tail	tail fiber protein	tail	S4TTA5	Salmonella_phage	100.0	1.1e-84
SQI07317.1|4392967_4393126_-	Phage outer membrane lipoprotein Rz1	NA	S4TNY4	Salmonella_phage	100.0	2.6e-22
SQI07318.1|4393112_4393526_-	lysozyme	NA	S4TRW3	Salmonella_phage	96.4	1.3e-41
SQI07319.1|4393522_4394020_-	phage lysozyme gene	NA	S4TUB1	Salmonella_phage	99.4	1.2e-92
SQI07320.1|4394006_4394303_-|holin	phage holin protein	holin	Q6K1I2	Salmonella_virus	99.0	1.7e-46
SQI07321.1|4394306_4394510_-|tail	phage tail protein	tail	A0A0M3ULF4	Salmonella_phage	100.0	3.6e-32
SQI07322.1|4394509_4395016_-|capsid	capsid completion protein	capsid	S4TNY1	Salmonella_phage	100.0	1.3e-91
SQI07323.1|4395109_4395859_-|terminase	terminase, endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	96.8	3.8e-127
SQI07324.1|4395862_4396930_-|capsid	Phage major capsid protein	capsid	Q6K1I6	Salmonella_virus	98.6	3.5e-195
SQI07325.1|4397006_4397861_-	phage protein V	NA	Q6K1I7	Salmonella_virus	99.6	6.2e-158
SQI07326.1|4398026_4399796_+|terminase	Phage terminase ATPase subunit	terminase	S4TT96	Salmonella_phage	100.0	0.0e+00
SQI07327.1|4399795_4400842_+|portal	phage portal pbsx family protein	portal	S4TNX7	Salmonella_phage	99.7	8.8e-191
SQI07328.1|4400872_4401598_-	Uncharacterised protein	NA	S5W9H2	Leptospira_phage	27.1	2.2e-07
SQI07329.1|4401594_4402413_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI07330.1|4402751_4403330_-	Uncharacterised protein	NA	S5M7T3	Escherichia_phage	48.4	3.9e-15
SQI07331.1|4403371_4403842_-	Uncharacterized phage-associated protein	NA	NA	NA	NA	NA
SQI07332.1|4404100_4406371_-	replication protein	NA	A0A0F7LBQ2	Escherichia_phage	93.2	0.0e+00
SQI07333.1|4406360_4406636_-	gp83	NA	M1TAP2	Escherichia_phage	97.8	2.5e-44
SQI07334.1|4406632_4406857_-	C4-type zinc finger protein, DksA/TraR family	NA	A0A0F7LDG9	Escherichia_phage	98.6	5.0e-35
SQI07335.1|4406859_4407159_-	11.3 kDa protein in GpA 5'region	NA	S4TUD1	Salmonella_phage	96.0	1.3e-43
SQI07336.1|4407158_4407383_-	8.3 kDa protein in GpA 5'region	NA	S4TP68	Salmonella_phage	97.3	2.6e-31
SQI07337.1|4407446_4407947_-	Replication protein (GpB)	NA	M1SV55	Escherichia_phage	99.4	5.9e-92
SQI07338.1|4408116_4408389_-	Cox protein	NA	Q1JS20	Enterobacteria_phage	98.9	1.5e-46
SQI07339.1|4408524_4408818_+	phage repressor protein c	NA	Q1JS21	Enterobacteria_phage	96.9	3.4e-47
SQI07340.1|4408887_4409868_+|integrase	Puataive integrase	integrase	Q858U3	Yersinia_virus	98.2	2.2e-183
SQI07341.1|4410052_4410553_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
4409984:4410030	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQI07342.1|4410703_4411402_+	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
SQI07343.1|4411398_4412772_+	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
SQI07344.1|4412822_4413218_-	membrane protein	NA	NA	NA	NA	NA
SQI07345.1|4413229_4413919_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
SQI07346.1|4413988_4414609_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
