assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900477895.1_47022_G01	LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	1	174398-174476	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Orphan	TTGATATTAGCCTGGTGGTAATG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|70aa|up_9|LS483455.1_161840_162050_+,NA	NA|70aa|up_9|LS483455.1_161840_162050_+	NA	NA|197aa|up_8|LS483455.1_162059_162650_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_7|LS483455.1_162646_163795_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|639aa|up_6|LS483455.1_164015_165932_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|203aa|up_5|LS483455.1_166407_167016_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_4|LS483455.1_167114_168506_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_3|LS483455.1_168502_170353_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|384aa|up_2|LS483455.1_170538_171690_+	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional	NA|294aa|up_1|LS483455.1_171761_172643_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|LS483455.1_172811_174350_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|LS483455.1_174579_176535_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|LS483455.1_176798_177614_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_2|LS483455.1_177762_178458_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|LS483455.1_178451_179312_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|LS483455.1_179316_179967_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|LS483455.1_179963_181460_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|LS483455.1_181463_182450_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|LS483455.1_182461_183739_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|LS483455.1_183741_184215_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|LS483455.1_184353_185286_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
GCA_900477895.1_47022_G01	LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	2	925660-925993	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	2,5,5	5	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|49aa|up_0|LS483455.1_925393_925540_+,NA	NA|919aa|up_9|LS483455.1_912642_915399_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|LS483455.1_915456_916752_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|LS483455.1_916803_919038_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|96aa|up_6|LS483455.1_919191_919479_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_5|LS483455.1_919444_919741_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_4|LS483455.1_920509_921310_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|LS483455.1_921537_923175_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|LS483455.1_923257_924556_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_1|LS483455.1_924691_925363_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|49aa|up_0|LS483455.1_925393_925540_+	NA	NA|266aa|down_0|LS483455.1_926090_926888_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483455.1_926975_927338_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483455.1_927773_929573_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483455.1_929572_931285_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483455.1_931360_932095_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483455.1_932182_933136_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|430aa|down_6|LS483455.1_933519_934809_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_7|LS483455.1_935778_936825_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|LS483455.1_937075_937984_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_9|LS483455.1_937993_939433_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCA_900477895.1_47022_G01	LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	3	934820-935764	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|49aa|up_7|LS483455.1_925393_925540_+,NA	NA|433aa|up_9|LS483455.1_923257_924556_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|LS483455.1_924691_925363_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|49aa|up_7|LS483455.1_925393_925540_+	NA	NA|266aa|up_6|LS483455.1_926090_926888_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_5|LS483455.1_926975_927338_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|LS483455.1_927773_929573_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|LS483455.1_929572_931285_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|LS483455.1_931360_932095_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|LS483455.1_932182_933136_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|430aa|up_0|LS483455.1_933519_934809_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_0|LS483455.1_935778_936825_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483455.1_937075_937984_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483455.1_937993_939433_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483455.1_939419_940025_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483455.1_940075_940399_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483455.1_940589_940901_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483455.1_940919_941630_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483455.1_941629_942109_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483455.1_942105_943155_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483455.1_943135_943897_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900477895.1_47022_G01	LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4	3696455-3696533	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Orphan	GGTTTATGCCTGATGGCGCTACGCTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA,NA|141aa|down_5|LS483455.1_3703520_3703943_-	NA|784aa|up_9|LS483455.1_3682442_3684794_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_8|LS483455.1_3684967_3687874_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_7|LS483455.1_3687885_3688545_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|271aa|up_6|LS483455.1_3688639_3689452_-	PRK09430, djlA, co-chaperone DjlA	NA|787aa|up_5|LS483455.1_3689705_3692066_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|up_4|LS483455.1_3692119_3693406_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|up_3|LS483455.1_3693405_3694395_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|up_2|LS483455.1_3694391_3695213_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|up_1|LS483455.1_3695215_3695593_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|up_0|LS483455.1_3695603_3696452_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_0|LS483455.1_3696602_3697082_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|down_1|LS483455.1_3697280_3699143_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|down_2|LS483455.1_3699135_3699666_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|630aa|down_3|LS483455.1_3700219_3702109_-	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]	NA|97aa|down_4|LS483455.1_3703006_3703297_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|141aa|down_5|LS483455.1_3703520_3703943_-	NA	NA|77aa|down_6|LS483455.1_3704236_3704467_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|447aa|down_7|LS483455.1_3704555_3705896_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|down_8|LS483455.1_3706043_3706331_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|down_9|LS483455.1_3706327_3707614_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional
