The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	628629	646250	4563000	integrase,tail,terminase,protease	Salmonella_phage(40.0%)	20	622696:622716	648535:648555
622696:622716	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
SQH83266.1|628629_630198_+	Methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
SQH83267.1|630194_630839_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH83268.1|631073_631841_+	siderophore-interacting protein	NA	NA	NA	NA	NA
SQH83269.1|632115_632961_-	Predicted nucleotide-binding protein containing TIR-like domain	NA	NA	NA	NA	NA
SQH83270.1|633044_634061_-|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	97.0	3.8e-191
SQH83271.1|634060_634636_-	repressor protein	NA	A0A218M4J1	Erwinia_phage	57.6	3.4e-59
SQH83272.1|634765_635029_+	phage regulatory protein	NA	A0A218M4I5	Erwinia_phage	98.9	4.1e-44
SQH83273.1|635059_635569_+	phage regulatory protein	NA	A0A0M4QWN1	Salmonella_phage	98.2	1.1e-88
SQH83274.1|635576_635804_+	bacteriophage protein	NA	A0A0M4RTI3	Salmonella_phage	98.7	3.2e-37
SQH83275.1|635790_635991_+	signal peptide protein	NA	A0A0M5M7U3	Salmonella_phage	98.5	2.3e-31
SQH83276.1|636032_636602_-|terminase	Phage terminase ATPase subunit	terminase	S4TT96	Salmonella_phage	96.2	4.3e-83
SQH83277.1|636682_637876_+|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	91.7	2.2e-185
SQH83278.1|637890_638376_+	gp25	NA	Q6K1G5	Salmonella_virus	100.0	1.0e-85
SQH83279.1|638372_639542_+	phage late control gene D	NA	A0A0M5M5V5	Salmonella_phage	97.7	1.1e-210
SQH83280.1|639608_639827_+	phage late control gene	NA	A0A2I8TV89	Erwinia_phage	98.6	9.5e-39
SQH83281.1|640185_640692_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
SQH83282.1|640815_642798_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
SQH83283.1|642812_644558_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
SQH83284.1|644793_645009_-	30S ribosomal subunit protein S21	NA	NA	NA	NA	NA
SQH83285.1|645236_646250_+|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
648535:648555	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 2
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	1634182	1643353	4563000	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQH84162.1|1634182_1635130_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
SQH84163.1|1635113_1635845_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQH84164.1|1635825_1635933_-	membrane protein	NA	NA	NA	NA	NA
SQH84165.1|1635992_1636724_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQH84166.1|1636946_1638632_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQH84167.1|1638628_1639348_+	two-component system response regulator	NA	NA	NA	NA	NA
SQH84168.1|1639394_1639862_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQH84169.1|1639918_1640449_-	lipoprotein	NA	NA	NA	NA	NA
SQH84170.1|1640620_1641079_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
SQH84171.1|1641319_1643353_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	6.1e-55
>prophage 3
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	1890994	1996126	4563000	holin,terminase,protease,transposase,integrase,tail,lysis	Enterobacteria_phage(20.37%)	104	1955588:1955603	1993882:1993897
SQH84410.1|1890994_1891678_-|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH84411.1|1891848_1892250_-|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH84412.1|1892384_1893827_-	pyruvate kinase A	NA	NA	NA	NA	NA
SQH84413.1|1893950_1894820_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQH84414.1|1895161_1896637_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.0e-79
SQH84415.1|1896871_1898683_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQH84416.1|1898720_1899362_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQH84417.1|1899461_1900640_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SQH84418.1|1900770_1901061_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
SQH84419.1|1901128_1901482_+	protein YebF	NA	NA	NA	NA	NA
SQH84420.1|1901575_1902235_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQH84421.1|1902447_1904499_+	oligopeptidase	NA	NA	NA	NA	NA
SQH84422.1|1904533_1905232_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
SQH84423.1|1905255_1905912_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQH84424.1|1906019_1906250_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQH84425.1|1906387_1906762_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQH84426.1|1906762_1907638_+	membrane protein	NA	NA	NA	NA	NA
SQH84427.1|1907654_1908008_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQH84428.1|1908391_1909471_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.4	1.3e-99
SQH84429.1|1909784_1910213_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84430.1|1910228_1910744_-	Sigma-70, region 4	NA	A0A2I7RQG9	Vibrio_phage	37.8	1.0e-06
SQH84431.1|1910885_1911071_-	Protein of uncharacterised function (DUF1187)	NA	A0A0U2QL97	Escherichia_phage	59.6	2.9e-12
SQH84432.1|1911117_1911948_-	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	7.7e-105
SQH84433.1|1911940_1914631_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	74.9	1.1e-115
SQH84434.1|1914771_1915107_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84435.1|1915182_1915389_-	prophage Kil protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
SQH84436.1|1915392_1915668_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84437.1|1915917_1916142_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84438.1|1916441_1916774_-	putative regulator	NA	A0A0M4R5D1	Salmonella_phage	32.7	5.6e-06
SQH84439.1|1916938_1917193_+	CRO	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
SQH84440.1|1917179_1917674_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQH84441.1|1917718_1918594_+	DNA-binding protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
SQH84442.1|1918600_1919353_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	76.5	3.8e-103
SQH84443.1|1919469_1919613_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84444.1|1919774_1920332_-	Domain of uncharacterised function (DUF955)	NA	NA	NA	NA	NA
SQH84445.1|1920340_1920697_-	Helix-turn-helix domain	NA	NA	NA	NA	NA
SQH84446.1|1921519_1921768_+	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQH84447.1|1921831_1922431_+	IrsA	NA	A0A0U2RT94	Escherichia_phage	82.9	1.2e-96
SQH84448.1|1922427_1922622_+	Phage protein	NA	S4TNP0	Salmonella_phage	61.5	7.9e-13
SQH84449.1|1922603_1922912_+	Protein of uncharacterised function (DUF1364)	NA	K7P7Q1	Enterobacteria_phage	78.3	5.8e-34
SQH84450.1|1922921_1923284_+	phage antiterminator	NA	Q777W5	Enterobacteria_phage	80.8	1.3e-53
SQH84451.1|1923396_1925865_-	phage-like protein	NA	NA	NA	NA	NA
SQH84452.1|1926507_1926726_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84453.1|1926737_1927277_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84454.1|1927448_1927757_+|holin	phage-holin analog protein	holin	NA	NA	NA	NA
SQH84455.1|1927734_1928223_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	68.1	1.3e-56
SQH84456.1|1928207_1928684_+|lysis	bacteriophage lysis protein	lysis	A0A0M4RD57	Salmonella_phage	75.5	5.1e-53
SQH84457.1|1929193_1929985_+|terminase	putative prophage terminase small subunit	terminase	A0A0P0ZG40	Escherichia_phage	49.0	7.7e-38
SQH84458.1|1929965_1931678_+	Uncharacterised protein	NA	A0A2R2Z350	Escherichia_phage	86.2	1.5e-291
SQH84459.1|1931677_1933825_+	Uncharacterised protein	NA	V5URY3	Shigella_phage	81.4	4.5e-306
SQH84460.1|1933966_1934962_+	Uncharacterised protein	NA	A0A2L1IV47	Escherichia_phage	53.1	1.6e-85
SQH84461.1|1935015_1936230_+	Uncharacterised protein	NA	A0A2L1IV46	Escherichia_phage	85.4	7.8e-207
SQH84462.1|1936291_1936705_+	Uncharacterised protein	NA	E7DYW8	Enterobacteria_phage	58.9	6.9e-30
SQH84463.1|1936762_1937215_+	Uncharacterised protein	NA	A0A2R2Z354	Escherichia_phage	58.5	5.0e-34
SQH84464.1|1937198_1937762_+	Uncharacterised protein	NA	A0A2R2Z349	Escherichia_phage	53.5	1.0e-47
SQH84465.1|1937761_1938415_+	Uncharacterised protein	NA	Q08J85	Stx2-converting_phage	66.0	8.8e-80
SQH84466.1|1938411_1940133_+|tail	Prophage tail fibre N-terminal	tail	A0A088CC33	Shigella_phage	70.6	1.7e-37
SQH84467.1|1940142_1940721_+|tail	phage tail assembly protein	tail	Q9LA61	Enterobacterial_phage	48.1	4.8e-45
SQH84468.1|1940835_1941480_+|tail	phage tail assembly protein	tail	Q9LA61	Enterobacterial_phage	46.7	4.1e-45
SQH84469.1|1941800_1942175_+	Uncharacterized protein y4iH Flags: Precursor	NA	I1TQ41	Pseudomonas_phage	41.3	5.6e-15
SQH84470.1|1942253_1942466_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84471.1|1942763_1943198_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84472.1|1944072_1945704_+	Uncharacterised protein	NA	A0A088CBK0	Shigella_phage	61.1	1.9e-195
SQH84473.1|1945700_1947263_+	host-specificity protein	NA	A0A2L1IV54	Escherichia_phage	59.9	1.1e-125
SQH84474.1|1947716_1948088_+	Uncharacterised protein	NA	A0A088CC37	Shigella_phage	73.8	6.6e-48
SQH84475.1|1948147_1948798_+	Uncharacterised protein	NA	Q08J74	Stx2-converting_phage	55.8	2.4e-53
SQH84476.1|1948810_1949206_+	Uncharacterised protein	NA	G9L6M0	Escherichia_phage	52.0	2.9e-25
SQH84477.1|1949218_1949470_+	proteobacterial sortase system OmpA family protein	NA	NA	NA	NA	NA
SQH84478.1|1949480_1950809_+	Uncharacterised protein	NA	A0A0P0ZD72	Stx2-converting_phage	31.8	6.2e-40
SQH84479.1|1950883_1959115_+	Uncharacterised protein	NA	Q08J70	Stx2-converting_phage	60.2	0.0e+00
1955588:1955603	attL	GAGAAGCACACGCCGG	NA	NA	NA	NA
SQH84480.1|1959477_1961574_-	virulence protein	NA	NA	NA	NA	NA
SQH84481.1|1962797_1963223_-|tail	phage tail-fiber asembly protein	tail	A0A1B0VCD0	Salmonella_phage	81.4	3.7e-63
SQH84482.1|1964171_1964549_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
SQH84483.1|1964600_1965734_+	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	43.5	6.8e-80
SQH84484.1|1966158_1966905_+	3-oxoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	48.1	7.6e-11
SQH84485.1|1967906_1968986_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.8	1.8e-101
SQH84486.1|1968982_1970254_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	66.7	3.8e-55
SQH84487.1|1970403_1970937_+	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
SQH84488.1|1971193_1971361_-	lytic enzyme	NA	NA	NA	NA	NA
SQH84489.1|1971663_1972155_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
SQH84490.1|1972141_1972321_+|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	53.2	2.7e-07
SQH84491.1|1972340_1972715_+|terminase	phage terminase large subunit	terminase	Q8VNN7	Enterobacteria_phage	83.7	2.6e-60
SQH84492.1|1972707_1973304_+	Tail Fiber Protein	NA	Q1MVL8	Enterobacteria_phage	43.5	6.0e-35
SQH84493.1|1973489_1974044_+	Tail Fiber Protein	NA	A0A0M3ULH6	Salmonella_phage	77.8	2.5e-35
SQH84494.1|1976478_1976601_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84495.1|1977049_1977664_-	disulfide bond formation protein	NA	NA	NA	NA	NA
SQH84496.1|1977673_1977832_-	membrane protein	NA	NA	NA	NA	NA
SQH84497.1|1977964_1978879_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
SQH84498.1|1979669_1980326_-	fimbriae usher protein	NA	NA	NA	NA	NA
SQH84499.1|1980405_1980744_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH84500.1|1981834_1982254_+	acetyltransferase	NA	NA	NA	NA	NA
SQH84501.1|1982641_1983118_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH84502.1|1983445_1983841_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
SQH84503.1|1984524_1985247_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQH84504.1|1985531_1985696_+	membrane protein	NA	NA	NA	NA	NA
SQH84505.1|1985686_1986571_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.5e-58
SQH84506.1|1986589_1986781_-	putative secreted protein	NA	NA	NA	NA	NA
SQH84507.1|1986891_1987131_-	conserved domain protein	NA	NA	NA	NA	NA
SQH84508.1|1987245_1988787_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQH84509.1|1988762_1991396_-	mce-related protein	NA	NA	NA	NA	NA
SQH84510.1|1991364_1992648_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQH84511.1|1992704_1993274_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQH84512.1|1993371_1994058_+	ProP effector	NA	NA	NA	NA	NA
1993882:1993897	attR	GAGAAGCACACGCCGG	NA	NA	NA	NA
SQH84513.1|1994077_1996126_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	1.0e-86
>prophage 4
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	2190448	2198178	4563000	integrase,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	7	2195649:2195662	2200406:2200419
SQH84701.1|2190448_2191822_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	2.1e-51
SQH84702.1|2191865_2192801_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	9.4e-144
SQH84703.1|2193476_2195309_+	T3SS secreted effector EspN-like protein	NA	A0A0N7KZG3	Stx2-converting_phage	34.7	2.5e-47
SQH84704.1|2195583_2195922_+	multidrug transporter	NA	NA	NA	NA	NA
2195649:2195662	attL	ATTAAAATTATCGG	NA	NA	NA	NA
SQH84705.1|2195974_2196409_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
SQH84706.1|2196922_2197324_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH84707.1|2197494_2198178_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
2200406:2200419	attR	CCGATAATTTTAAT	NA	NA	NA	NA
>prophage 5
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	2797476	2874529	4563000	integrase,protease,transposase,tRNA	Bacillus_phage(15.38%)	62	2848359:2848379	2866398:2866418
SQH85284.1|2797476_2798877_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
SQH85285.1|2799483_2800575_+	outer membrane protein 1a (IA;b;f), porin	NA	Q1MVN1	Enterobacteria_phage	51.7	1.7e-99
SQH85286.1|2800759_2801950_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQH85287.1|2802011_2802659_-	putative metal-binding enzyme YcbL -like protein	NA	NA	NA	NA	NA
SQH85288.1|2802686_2803235_-	exported protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
SQH85289.1|2803494_2805342_-	L,D-transpeptidase YcbB	NA	NA	NA	NA	NA
SQH85290.1|2805686_2810153_-	cell division protein	NA	NA	NA	NA	NA
SQH85291.1|2810152_2810857_-	condesin subunit E	NA	NA	NA	NA	NA
SQH85292.1|2810837_2812160_-	killing factor KicB	NA	NA	NA	NA	NA
SQH85293.1|2812152_2812956_-	SmtA protein	NA	NA	NA	NA	NA
SQH85294.1|2813091_2813868_+	Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism	NA	NA	NA	NA	NA
SQH85295.1|2813847_2814741_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH85296.1|2814951_2815698_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
SQH85297.1|2815694_2815877_-	Protein YcaR in KDO2-Lipid Abiosynthesis cluster	NA	NA	NA	NA	NA
SQH85298.1|2815928_2817161_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH85299.1|2817204_2818182_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SQH85300.1|2818178_2819927_-	transport ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	30.5	3.2e-60
SQH85301.1|2819963_2822228_-	ComEC family competence protein	NA	Q332C0	Clostridium_botulinum_C_phage	22.5	8.8e-10
SQH85302.1|2822404_2823088_-|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.2e-18
SQH85303.1|2823258_2823660_-|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH85304.1|2823772_2824057_-	integration host factor beta-subunit	NA	A7KV42	Bacillus_phage	40.2	4.1e-10
SQH85305.1|2824212_2825886_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQH85306.1|2825999_2826683_-	cytidylate kinase	NA	NA	NA	NA	NA
SQH85307.1|2826855_2827617_-	lipoprotein	NA	NA	NA	NA	NA
SQH85308.1|2827760_2829044_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQH85309.1|2829114_2830203_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	2.1e-78
SQH85310.1|2830388_2831081_-	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH85311.1|2831217_2832978_+	UPF0142 protein	NA	NA	NA	NA	NA
SQH85312.1|2833382_2834240_+	formate transporter	NA	NA	NA	NA	NA
SQH85313.1|2834299_2836582_+	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	42.0	1.1e-161
SQH85314.1|2836653_2837613_-	pathogenicity island 1 protein SopD2	NA	NA	NA	NA	NA
SQH85315.1|2837902_2838070_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH85316.1|2838188_2838986_+	pyruvate formate-lyase activating enzyme	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	2.7e-22
SQH85317.1|2839277_2840699_-	transport protein	NA	NA	NA	NA	NA
SQH85318.1|2840916_2842065_-	transport protein	NA	NA	NA	NA	NA
SQH85319.1|2842414_2843278_-	anaerobic dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA	NA
SQH85320.1|2843279_2843897_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
SQH85321.1|2843907_2846352_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.5	5.4e-223
SQH85322.1|2846589_2847882_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.9	7.3e-94
SQH85323.1|2848140_2849484_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	1.3e-80
2848359:2848379	attL	GCGCATTACGCAGATGGACAG	NA	NA	NA	NA
SQH85324.1|2849493_2850105_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQH85325.1|2850247_2854285_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
SQH85326.1|2854419_2854914_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SQH85327.1|2855460_2856429_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	45.5	6.5e-63
SQH85328.1|2856543_2858310_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	NA	W8CYL7	Bacillus_phage	25.1	6.0e-22
SQH85329.1|2858310_2860032_+	transport ATP-binding protein CydC	NA	W8CYL7	Bacillus_phage	23.3	1.9e-12
SQH85330.1|2860076_2860781_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
SQH85331.1|2861092_2861311_+	initiation factor IF-1	NA	NA	NA	NA	NA
SQH85332.1|2861401_2862313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQH85333.1|2862421_2863282_+	pirin-like protein	NA	NA	NA	NA	NA
SQH85334.1|2863301_2863979_+	Isochorismatase family protein	NA	NA	NA	NA	NA
SQH85335.1|2864316_2864718_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQH85336.1|2864798_2865572_+|integrase	integrase	integrase	Q6H9S3	Enterobacteria_phage	34.5	1.3e-18
SQH85337.1|2865712_2865910_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH85338.1|2866104_2866566_+|transposase	transposase IS1113	transposase	F6MIM4	Haemophilus_phage	64.7	6.3e-08
2866398:2866418	attR	GCGCATTACGCAGATGGACAG	NA	NA	NA	NA
SQH85339.1|2866699_2866972_+|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	62.7	2.6e-17
SQH85340.1|2867185_2867665_+	type V secretory pathway, adhesin AidA	NA	NA	NA	NA	NA
SQH85341.1|2868165_2870442_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
SQH85342.1|2870472_2870793_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
SQH85343.1|2871116_2871338_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQH85344.1|2871467_2873414_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
SQH85345.1|2873410_2874529_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 6
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	3236197	3295316	4563000	transposase,protease,tRNA	Bacillus_phage(25.0%)	52	NA	NA
SQH85680.1|3236197_3237115_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQH85681.1|3237111_3237564_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQH85682.1|3237564_3237981_-	copper efflux regulator	NA	NA	NA	NA	NA
SQH85683.1|3238090_3240592_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	6.7e-112
SQH85684.1|3240744_3241320_+	secreted protein	NA	NA	NA	NA	NA
SQH85685.1|3242652_3243132_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQH85686.1|3243248_3244901_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQH85687.1|3245073_3246294_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQH85688.1|3246305_3246431_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH85689.1|3246508_3248185_+	transport protein	NA	NA	NA	NA	NA
SQH85690.1|3248233_3249538_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQH85691.1|3249690_3250662_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQH85692.1|3250658_3251621_-	ferrochelatase	NA	NA	NA	NA	NA
SQH85693.1|3251848_3252493_-	adenylate kinase	NA	NA	NA	NA	NA
SQH85694.1|3252734_3254609_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
SQH85695.1|3254719_3255325_-	recombination protein RecR	NA	NA	NA	NA	NA
SQH85696.1|3255324_3255654_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQH85697.1|3257741_3258293_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQH85698.1|3258445_3258823_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQH85699.1|3258903_3259419_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQH85700.1|3259432_3259600_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH85701.1|3259669_3260593_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.2	2.1e-63
SQH85702.1|3260634_3263997_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQH85703.1|3264115_3264769_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQH85704.1|3264910_3266104_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQH85705.1|3266126_3269276_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQH85706.1|3269771_3270146_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQH85707.1|3270173_3270392_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQH85708.1|3270569_3271121_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQH85709.1|3271238_3271709_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH85710.1|3271764_3271905_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQH85711.1|3271910_3272171_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH85712.1|3272395_3273946_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQH85713.1|3274254_3274566_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQH85714.1|3274598_3275168_-	lipoprotein	NA	NA	NA	NA	NA
SQH85715.1|3275382_3276243_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQH85716.1|3276342_3277629_-	ammonium transporter	NA	NA	NA	NA	NA
SQH85717.1|3277660_3277999_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQH85718.1|3278211_3279993_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	5.4e-39
SQH85719.1|3279985_3281758_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQH85720.1|3281798_3282257_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH85721.1|3282369_3283425_+	lyase	NA	NA	NA	NA	NA
SQH85722.1|3283474_3284293_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQH85723.1|3284393_3286088_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQH85724.1|3286158_3286854_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	9.3e-88
SQH85725.1|3286961_3287360_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQH85726.1|3287463_3287838_-	competence protein ComEA	NA	NA	NA	NA	NA
SQH85727.1|3287987_3289859_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQH85728.1|3290149_3290422_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQH85729.1|3290630_3292985_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQH85730.1|3293170_3294442_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQH85731.1|3294692_3295316_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 7
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4563000	4310661	4345149	4563000	plate,holin,capsid,terminase,integrase,tail,portal	Cronobacter_phage(63.33%)	41	4309953:4309997	4340524:4340568
4309953:4309997	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
SQH86621.1|4310661_4312386_-	phage protein	NA	F1BUJ7	Cronobacter_phage	63.0	1.3e-175
SQH86622.1|4312393_4312936_-	phage protein	NA	F1BUJ9	Cronobacter_phage	56.0	7.1e-43
SQH86623.1|4312907_4313630_-	phage protein	NA	F1BUK1	Cronobacter_phage	40.3	1.5e-40
SQH86624.1|4314206_4316153_-|tail	Gifsy-2 prophage tail fiber protein	tail	F1BUK3	Cronobacter_phage	68.1	1.7e-123
SQH86625.1|4316164_4316758_-|tail	Bacteriophage P2-related tail formation protein	tail	F1BUK5	Cronobacter_phage	63.8	4.7e-72
SQH86626.1|4316750_4317935_-|plate	Phage baseplate	plate	F1BUK6	Cronobacter_phage	69.5	4.0e-155
SQH86627.1|4317927_4318263_-	phage protein	NA	F1BUK8	Cronobacter_phage	58.7	1.2e-29
SQH86628.1|4318259_4320374_-|tail	phage tail tape measure protein, TP901 family, core region	tail	F1BUK9	Cronobacter_phage	41.2	2.9e-140
SQH86629.1|4320563_4320833_-	putative phage gene	NA	NA	NA	NA	NA
SQH86630.1|4320935_4321319_-	putative phage-related protein	NA	F1BUL2	Cronobacter_phage	38.5	1.2e-12
SQH86631.1|4321318_4321657_-	hypothetical phage-related protein	NA	F1BUL3	Cronobacter_phage	84.2	8.9e-44
SQH86632.1|4321643_4321955_-|holin	phage holin protein	holin	NA	NA	NA	NA
SQH86633.1|4321959_4322415_-	phage protein	NA	A5X9I1	Aeromonas_virus	52.3	1.5e-38
SQH86634.1|4322418_4323561_-	Topoisomerase IA	NA	F1BUL5	Cronobacter_phage	61.6	1.1e-130
SQH86635.1|4323563_4324259_-	Phage virion morphogenesis protein	NA	F1BUL6	Cronobacter_phage	58.4	6.7e-70
SQH86636.1|4324255_4324732_-	putative phage gene	NA	NA	NA	NA	NA
SQH86637.1|4324728_4325202_-	putative phage gene	NA	F1BUL8	Cronobacter_phage	54.3	1.2e-30
SQH86638.1|4325304_4326006_-|terminase	phage terminase subunit	terminase	F1BUM0	Cronobacter_phage	57.1	2.0e-69
SQH86639.1|4326008_4327031_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	55.7	6.6e-98
SQH86640.1|4327059_4328121_-|capsid	putative capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	44.3	2.9e-32
SQH86641.1|4328298_4330110_+|terminase	Phage terminase ATPase subunit	terminase	F1BUM5	Cronobacter_phage	54.4	1.3e-184
SQH86642.1|4330106_4331168_+|portal	phage portal protein, pbsx family	portal	F1BUM7	Cronobacter_phage	60.7	8.8e-122
SQH86643.1|4331164_4331482_+	zinc-finger protein	NA	F1BUM8	Cronobacter_phage	55.0	1.8e-25
SQH86644.1|4331512_4332133_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH86645.1|4332125_4333175_-	Protein of uncharacterised function DUF262	NA	A0A0R6PKN1	Moraxella_phage	32.5	5.4e-23
SQH86646.1|4333174_4333291_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH86647.1|4333397_4336034_-	possible endonuclease	NA	E5G6L9	Salmonella_phage	37.9	3.5e-127
SQH86648.1|4336048_4337053_-	Methyl-directed repair DNA adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	65.9	1.1e-129
SQH86649.1|4337123_4337513_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH86650.1|4337528_4337750_-	Uncharacterised protein	NA	A0A0M4S6M9	Salmonella_phage	50.0	2.2e-11
SQH86651.1|4337886_4338117_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH86652.1|4338117_4338582_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH86653.1|4338591_4338864_-	Cox protein	NA	Q1JS20	Enterobacteria_phage	85.6	1.3e-40
SQH86654.1|4339059_4339353_+	phage repressor protein c	NA	Q1JS37	Enterobacteria_phage	75.3	1.1e-34
SQH86655.1|4339422_4340403_+|integrase	Puataive integrase	integrase	Q7Y4C5	Escherichia_virus	85.0	1.2e-160
SQH86656.1|4340592_4341093_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
4340524:4340568	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
SQH86657.1|4341243_4341942_+	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
SQH86658.1|4341938_4343312_+	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
SQH86659.1|4343362_4343758_-	membrane protein	NA	NA	NA	NA	NA
SQH86660.1|4343769_4344459_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
SQH86661.1|4344528_4345149_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
