The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	649685	686127	4791042	plate,capsid,integrase,tail,terminase	Cronobacter_phage(69.44%)	44	646162:646177	656278:656293
646162:646177	attL	ACAAATTCAATGGCCA	NA	NA	NA	NA
SQH43318.1|649685_651251_+	Methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.0	2.0e-13
SQH43319.1|651247_651892_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH43320.1|652126_652894_+	siderophore-interacting protein	NA	NA	NA	NA	NA
SQH43321.1|653117_653645_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43322.1|653641_654673_-|integrase	phage integrase family protein	integrase	A0A218M4I3	Erwinia_phage	59.8	4.9e-117
SQH43323.1|654672_655260_-	repressor protein	NA	A0A218M4J1	Erwinia_phage	42.6	1.5e-33
SQH43324.1|655397_655619_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43325.1|655649_656153_+	phage protein	NA	F1BUN6	Cronobacter_phage	73.1	7.0e-61
SQH43326.1|656162_656336_+	Uncharacterised protein	NA	NA	NA	NA	NA
656278:656293	attR	ACAAATTCAATGGCCA	NA	NA	NA	NA
SQH43327.1|656344_656773_+	Uncharacterised protein	NA	F1BUN5	Cronobacter_phage	55.7	2.3e-28
SQH43328.1|656772_657174_+	Uncharacterised protein	NA	F1BUN2	Cronobacter_phage	67.7	1.3e-49
SQH43329.1|657241_657475_+	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
SQH43330.1|657465_658032_+	Eaa protein	NA	A0A076GCP4	Escherichia_phage	43.2	8.9e-12
SQH43331.1|658031_658361_+	gp91	NA	C9E2N9	Enterococcus_phage	44.7	1.7e-10
SQH43332.1|658350_659211_+	putative phage gene	NA	F1BUN1	Cronobacter_phage	81.0	6.0e-129
SQH43333.1|659207_661229_+	Phage replication protein	NA	F1BUM9	Cronobacter_phage	74.2	6.7e-296
SQH43334.1|661348_661555_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43335.1|661528_661798_-	zinc-finger protein	NA	F1BUM8	Cronobacter_phage	94.3	5.1e-42
SQH43336.1|661848_662910_-	Membrane protein	NA	F1BUM7	Cronobacter_phage	77.1	2.3e-162
SQH43337.1|662906_664682_-|terminase	Phage terminase ATPase subunit	terminase	F1BUM5	Cronobacter_phage	83.1	7.5e-291
SQH43338.1|664841_665645_+|capsid	putative capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	56.0	1.6e-78
SQH43339.1|665706_666729_+|capsid	Phage major capsid protein	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
SQH43340.1|666732_667434_+|terminase	phage terminase subunit	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
SQH43341.1|667479_667983_+	putative phage gene	NA	F1BUL8	Cronobacter_phage	82.0	5.2e-64
SQH43342.1|667979_668486_+	putative phage gene	NA	F1BUL7	Cronobacter_phage	69.1	1.5e-63
SQH43343.1|668482_669190_+	Phage virion morphogenesis protein	NA	F1BUL6	Cronobacter_phage	76.5	1.5e-101
SQH43344.1|669186_670314_+	Topoisomerase IA	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
SQH43345.1|670310_670766_+	phage protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
SQH43346.1|670775_671069_+	Holin	NA	C7BGD7	Burkholderia_phage	46.2	1.3e-14
SQH43347.1|671065_671407_+	hypothetical phage-related protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
SQH43348.1|671406_671739_+	putative phage-related protein	NA	F1BUL2	Cronobacter_phage	70.0	2.6e-35
SQH43349.1|671885_672143_+	putative phage gene	NA	A5X9I7	Aeromonas_virus	63.4	4.7e-21
SQH43350.1|672330_674301_+|tail	Phage-related tail protein	tail	F1BUK9	Cronobacter_phage	69.9	9.5e-271
SQH43351.1|674297_674627_+	phage protein	NA	F1BUK8	Cronobacter_phage	71.4	8.4e-39
SQH43352.1|674623_675808_+|plate	Phage baseplate	plate	F1BUK6	Cronobacter_phage	78.4	6.7e-179
SQH43353.1|675800_676388_+|tail	Bacteriophage P2-related tail formation protein	tail	F1BUK5	Cronobacter_phage	82.1	6.4e-90
SQH43354.1|676397_678632_+	gp19	NA	A0A192Y7M1	Salmonella_phage	72.8	3.1e-169
SQH43355.1|678644_679199_+	gp20	NA	S4TUB9	Salmonella_phage	93.4	5.3e-94
SQH43356.1|679188_679914_+	phage protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
SQH43357.1|679885_680431_+	phage protein	NA	F1BUJ9	Cronobacter_phage	73.1	1.5e-64
SQH43358.1|680430_682134_+	phage protein	NA	F1BUJ7	Cronobacter_phage	81.4	4.4e-224
SQH43359.1|682752_683067_+	Uncharacterised protein	NA	S6B1N1	Thermus_phage	39.4	2.9e-12
SQH43360.1|683515_684022_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
SQH43361.1|684144_686127_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
>prophage 2
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	1155242	1165040	4791042	capsid,integrase	Enterobacteria_phage(87.5%)	12	1160913:1160928	1167655:1167670
SQH43805.1|1155242_1157576_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	83.5	0.0e+00
SQH43806.1|1157590_1157911_-	putative prophage protein	NA	NA	NA	NA	NA
SQH43807.1|1157907_1158168_-	bacteriophage protein	NA	NA	NA	NA	NA
SQH43808.1|1158241_1158691_-	Uncharacterised protein	NA	Q7M298	Enterobacteria_phage	70.5	1.5e-43
SQH43809.1|1158683_1158983_-	prophage derepression protein	NA	Q7M2A0	Enterobacteria_phage	70.7	6.1e-28
SQH43810.1|1159571_1159838_-	prophage regulatory protein	NA	Q7M299	Enterobacteria_phage	78.4	1.1e-33
SQH43811.1|1160385_1161123_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	62.3	1.7e-76
1160913:1160928	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
SQH43812.1|1161119_1161365_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	75.3	5.3e-30
SQH43813.1|1161381_1161948_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	1.0e-55
SQH43814.1|1162295_1163153_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43815.1|1163152_1163812_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43816.1|1163846_1165040_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.1	4.1e-107
1167655:1167670	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 3
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	1226684	1275469	4791042	holin,tRNA,protease,integrase,head,tail,lysis,terminase	Salmonella_phage(83.33%)	65	1231159:1231173	1245519:1245533
SQH43859.1|1226684_1227422_+|tRNA	tRNA (adenine-N(6)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQH43860.1|1227406_1229029_-	L-aspartate oxidase	NA	NA	NA	NA	NA
SQH43861.1|1229453_1230029_+	RNA polymerase sigma-E factor (sigma-24)	NA	NA	NA	NA	NA
SQH43862.1|1230060_1230711_+	anti-RNA polymerase sigma factor SigE	NA	NA	NA	NA	NA
SQH43863.1|1230710_1231667_+	anti-sigma E factor	NA	NA	NA	NA	NA
1231159:1231173	attL	ATGGTACGCGTTACA	NA	NA	NA	NA
SQH43864.1|1231663_1232143_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
SQH43865.1|1232640_1233870_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
SQH43866.1|1233847_1234132_-	excisionase-like protein	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
SQH43867.1|1234172_1234415_-	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	94.9	3.7e-36
SQH43868.1|1234417_1235314_-	putative DNA methylase	NA	A0A0M4R347	Salmonella_phage	95.8	9.3e-157
SQH43869.1|1235310_1235934_-	putative phage-type endonuclease	NA	S0A2A9	Cellulophaga_phage	48.6	1.3e-45
SQH43870.1|1235930_1236434_-	Uncharacterised protein	NA	A0A0F7L7F5	uncultured_marine_virus	31.5	1.1e-13
SQH43871.1|1236439_1236736_-	Host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	100.0	1.1e-48
SQH43872.1|1236826_1237027_-	FtsZ inhibitor protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
SQH43873.1|1237019_1237244_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH43874.1|1237431_1237866_-	regulatory protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
SQH43875.1|1238233_1238554_+	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
SQH43876.1|1238644_1239622_+	regulatory protein	NA	H6WRX7	Salmonella_phage	97.0	1.6e-157
SQH43877.1|1239624_1240374_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
SQH43878.1|1240384_1240693_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	96.9	1.4e-48
SQH43879.1|1240670_1240856_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	57.4	8.1e-07
SQH43880.1|1240954_1241224_+	putative prophage protein	NA	NA	NA	NA	NA
SQH43881.1|1241546_1241780_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
SQH43882.1|1242194_1242797_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.0	2.2e-109
SQH43883.1|1242796_1243003_+	Phage protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
SQH43884.1|1243005_1243617_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	98.5	3.6e-91
SQH43885.1|1243613_1243754_+	DNA breaking-rejoining protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
SQH43886.1|1243750_1244440_+	antiterminator-like protein	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
SQH43887.1|1244634_1244982_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.8e-46
SQH43888.1|1244984_1245611_+	Phage endolysin	NA	Q858F0	Salmonella_phage	80.7	7.1e-95
1245519:1245533	attR	ATGGTACGCGTTACA	NA	NA	NA	NA
SQH43889.1|1245607_1246087_+|lysis	bacteriophage lysis protein	lysis	A0A0M4RD57	Salmonella_phage	80.5	7.6e-57
SQH43890.1|1246593_1247223_+|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	99.5	2.1e-110
SQH43891.1|1247225_1248848_+	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	99.6	0.0e+00
SQH43892.1|1248844_1250317_+	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	5.8e-281
SQH43893.1|1250330_1250939_+	putative bacteriophage protein	NA	A0A0M4REK0	Salmonella_phage	88.1	6.4e-101
SQH43894.1|1250953_1252186_+|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
SQH43895.1|1252190_1252688_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
SQH43896.1|1252699_1253641_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	99.4	3.5e-178
SQH43897.1|1253682_1254051_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	98.4	5.7e-60
SQH43898.1|1254016_1254424_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	95.6	3.0e-70
SQH43899.1|1254420_1254975_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.8e-94
SQH43900.1|1254961_1255351_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
SQH43901.1|1255340_1255889_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.8	3.3e-80
SQH43902.1|1255892_1257038_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.8	1.0e-163
SQH43903.1|1257050_1257494_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	6.0e-56
SQH43904.1|1257497_1257950_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	81.3	3.2e-65
SQH43905.1|1258127_1260137_+	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	98.7	0.0e+00
SQH43906.1|1260136_1260712_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
SQH43907.1|1260711_1261014_+	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
SQH43908.1|1261016_1262090_+	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	96.9	1.6e-187
SQH43909.1|1262086_1262419_+	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
SQH43910.1|1262507_1263260_+	putative bacteriophage protein	NA	NA	NA	NA	NA
SQH43911.1|1263261_1263672_+	putative bacteriophage protein	NA	NA	NA	NA	NA
SQH43912.1|1263732_1264485_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	70.9	8.0e-93
SQH43913.1|1264484_1264838_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	95.7	2.7e-59
SQH43914.1|1264838_1266038_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	98.7	4.8e-217
SQH43915.1|1266034_1266715_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	99.1	6.2e-129
SQH43916.1|1266714_1268358_+|tail	Long tail fiber protein p37 Protein Gp37; Receptor-recognizing protein	tail	A0A1B0VFW4	Salmonella_phage	66.0	4.2e-147
SQH43917.1|1268372_1268891_+|tail	bacteriophage tail protein	tail	A0A0U2QV64	Escherichia_phage	52.0	4.3e-45
SQH43918.1|1269061_1269703_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQH43919.1|1269976_1270210_-	Uncharacterised protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
SQH43920.1|1270445_1270859_-	Uncharacterised protein	NA	A0A192Y6F0	Salmonella_phage	99.3	1.1e-72
SQH43921.1|1270855_1271068_-	Uncharacterised protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
SQH43922.1|1271816_1272824_-	phage protein	NA	Q8HAB2	Salmonella_phage	90.1	4.7e-181
SQH43923.1|1273669_1275469_+	GTP-binding protein LepA	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
>prophage 4
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	1657147	1670898	4791042	protease,holin,tail,head	Salmonella_phage(38.46%)	14	NA	NA
SQH44255.1|1657147_1657939_+|tail	side tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.4	2.2e-48
SQH44256.1|1658607_1660974_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
SQH44257.1|1660973_1661075_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44258.1|1661064_1661295_+	DNA-binding protein	NA	Q8HA92	Salmonella_phage	100.0	5.0e-38
SQH44259.1|1661302_1662292_+	putative cytoplasmic protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
SQH44260.1|1662309_1662675_+	phage antiterminator	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
SQH44261.1|1662703_1664035_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
SQH44262.1|1664331_1664661_+|holin	holin	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
SQH44263.1|1664674_1665193_+|head,protease	phage pro-head protease	head,protease	Q8SBH9	Shigella_phage	87.3	2.6e-74
SQH44264.1|1665253_1666495_+	bacteriophage protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
SQH44265.1|1666497_1667025_+|tail	tail protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
SQH44266.1|1667402_1667846_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
SQH44267.1|1667899_1669729_-	acetylase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
SQH44268.1|1670226_1670898_+	DNA polymerase V subunit	NA	Q1MVE7	Enterobacteria_phage	71.3	1.3e-49
>prophage 5
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	1742946	1752117	4791042	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQH44333.1|1742946_1743894_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.4	6.2e-10
SQH44334.1|1743877_1744609_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQH44335.1|1744589_1744697_-	membrane protein	NA	NA	NA	NA	NA
SQH44336.1|1744756_1745488_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQH44337.1|1745710_1747396_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
SQH44338.1|1747392_1748112_+	two-component system response regulator	NA	NA	NA	NA	NA
SQH44339.1|1748158_1748626_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQH44340.1|1748682_1749213_-	lipoprotein	NA	NA	NA	NA	NA
SQH44341.1|1749384_1749843_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
SQH44342.1|1750083_1752117_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	1819496	1830002	4791042		Enterobacteria_phage(37.5%)	10	NA	NA
SQH44396.1|1819496_1820900_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	27.2	4.0e-21
SQH44397.1|1821077_1821971_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
SQH44398.1|1822347_1823433_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
SQH44399.1|1823432_1824332_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
SQH44400.1|1824379_1825258_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
SQH44401.1|1825261_1825810_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
SQH44402.1|1825815_1826808_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
SQH44403.1|1826804_1827578_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
SQH44404.1|1827582_1828662_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
SQH44405.1|1828688_1830002_+	lipopolysaccharide biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	2029529	2086991	4791042	transposase,tRNA,protease,integrase,terminase	Bacillus_virus(12.5%)	60	2041876:2041890	2060210:2060224
SQH44603.1|2029529_2031302_+|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH44604.1|2031395_2031848_+	dATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQH44605.1|2031877_2032618_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA	NA
SQH44606.1|2032654_2033176_+	crossover junction endodeoxyribonuclease	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
SQH44607.1|2033177_2033777_-	protein yebB	NA	NA	NA	NA	NA
SQH44608.1|2033985_2034678_+	membrane protein	NA	NA	NA	NA	NA
SQH44609.1|2035037_2035649_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA	NA
SQH44610.1|2035657_2036668_+	Holliday junction DNA helicase	NA	A0A127AWE7	Bacillus_phage	25.9	2.4e-07
SQH44611.1|2036746_2037532_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA	NA
SQH44612.1|2037528_2038284_-	high-affinity zinc transporter ATPase	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
SQH44613.1|2038305_2039307_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA	NA
SQH44614.1|2039322_2040642_+	Cell wall endopeptidase family M23/M37	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
SQH44615.1|2040758_2041730_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
SQH44616.1|2041802_2043245_-	pyruvate kinase A	NA	NA	NA	NA	NA
2041876:2041890	attL	ACCAGGTCGCCGGAA	NA	NA	NA	NA
SQH44617.1|2043368_2044238_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
SQH44618.1|2044579_2046055_+	glucose 6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
SQH44619.1|2046289_2048101_+	6-phosphogluconate dehydratase	NA	NA	NA	NA	NA
SQH44620.1|2048138_2048780_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
SQH44621.1|2048879_2050058_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SQH44622.1|2050188_2050479_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA	NA
SQH44623.1|2050546_2050900_+	protein YebF	NA	NA	NA	NA	NA
SQH44624.1|2050993_2051653_+	inner membrane protein YebE	NA	NA	NA	NA	NA
SQH44625.1|2051866_2053918_+	oligopeptidase	NA	NA	NA	NA	NA
SQH44626.1|2053954_2054653_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
SQH44627.1|2054676_2055333_-	Putative amido hydrolase	NA	NA	NA	NA	NA
SQH44628.1|2055440_2055671_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
SQH44629.1|2055808_2056183_+	Copper resistance protein CopC	NA	NA	NA	NA	NA
SQH44630.1|2056183_2057059_+	membrane protein	NA	NA	NA	NA	NA
SQH44631.1|2057075_2057429_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
SQH44632.1|2057811_2058891_-|integrase	phage integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.0	9.7e-100
SQH44633.1|2058887_2059994_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	66.7	1.1e-55
SQH44634.1|2060024_2060255_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
2060210:2060224	attR	TTCCGGCGACCTGGT	NA	NA	NA	NA
SQH44635.1|2060308_2060842_+	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
SQH44636.1|2061098_2061266_-	lytic enzyme	NA	NA	NA	NA	NA
SQH44637.1|2061573_2062065_+|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	57.5	4.9e-43
SQH44638.1|2062051_2062231_+|terminase	phage terminase large subunit	terminase	NA	NA	NA	NA
SQH44639.1|2065481_2065640_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44640.1|2065697_2066063_+	phage encoded protein PagM	NA	NA	NA	NA	NA
SQH44641.1|2066244_2066367_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44642.1|2066815_2067430_-	disulfide bond formation protein	NA	NA	NA	NA	NA
SQH44643.1|2067439_2067598_-	membrane protein	NA	NA	NA	NA	NA
SQH44644.1|2067730_2068645_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
SQH44645.1|2069775_2070069_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44646.1|2070432_2071290_+|transposase	transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	28.2	3.5e-20
SQH44647.1|2071289_2071436_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH44648.1|2072717_2073137_+	acetyltransferase	NA	NA	NA	NA	NA
SQH44649.1|2073509_2073986_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44650.1|2074313_2074709_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	33.1	1.6e-15
SQH44651.1|2075391_2076114_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQH44652.1|2076398_2076563_+	membrane protein	NA	NA	NA	NA	NA
SQH44653.1|2076535_2076769_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH44654.1|2076786_2077437_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
SQH44655.1|2077455_2077647_-	putative secreted protein	NA	NA	NA	NA	NA
SQH44656.1|2077757_2077997_-	conserved domain protein	NA	NA	NA	NA	NA
SQH44657.1|2078110_2079652_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQH44658.1|2079627_2082261_-	mce-related protein	NA	NA	NA	NA	NA
SQH44659.1|2082229_2083513_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQH44660.1|2083569_2084139_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQH44661.1|2084236_2084923_+	ProP effector	NA	NA	NA	NA	NA
SQH44662.1|2084942_2086991_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
>prophage 8
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	2713591	2761298	4791042	transposase,tRNA,portal,head,tail,lysis,terminase	Enterobacteria_phage(40.48%)	58	NA	NA
SQH45268.1|2713591_2713747_+|tail	tail fiber assembly protein	tail	E5G6P4	Salmonella_phage	75.0	2.2e-05
SQH45269.1|2714404_2714893_+|transposase	transposase-like protein	transposase	NA	NA	NA	NA
SQH45270.1|2715007_2715193_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH45271.1|2716377_2716896_-|tail	bacteriophage tail protein	tail	A0A0U2QV64	Escherichia_phage	51.4	2.5e-45
SQH45272.1|2719642_2719885_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45273.1|2719923_2723286_-|tail	Phage tail fiber protein	tail	K7PKJ2	Enterobacteria_phage	80.0	0.0e+00
SQH45274.1|2723348_2723855_-|tail	tail protein	tail	A5LH42	Enterobacteria_phage	79.2	3.2e-69
SQH45275.1|2723893_2724631_-	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	84.6	1.2e-128
SQH45276.1|2724637_2725336_-|tail	Minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	6.0e-103
SQH45277.1|2725345_2725675_-|tail	tail protein	tail	A5LH39	Enterobacteria_phage	70.4	2.1e-42
SQH45278.1|2725677_2728719_-|tail	tail protein	tail	A0A291AWX1	Escherichia_phage	64.1	1.7e-287
SQH45279.1|2728690_2729005_-|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	64.2	8.0e-31
SQH45280.1|2729025_2729421_-|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
SQH45281.1|2729471_2730212_-|tail	putative tail component of prophage	tail	A0A291AWU6	Escherichia_phage	76.9	2.8e-98
SQH45282.1|2730222_2730624_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	98.0	1.5e-50
SQH45283.1|2730620_2731199_-	Gifsy-1 prophagei VmtZ	NA	A5LH33	Enterobacteria_phage	79.7	1.1e-81
SQH45284.1|2731185_2731563_-|tail	tail attachment protein	tail	K7PHD8	Enterobacteria_phage	54.7	3.4e-28
SQH45285.1|2731573_2731933_-	DNA packaging protein	NA	NA	NA	NA	NA
SQH45286.1|2731990_2733019_-|head	head protein	head	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
SQH45287.1|2733073_2733421_-	Head decoration protein	NA	A0A2R9YJN3	Escherichia_phage	53.8	4.1e-20
SQH45288.1|2733433_2734930_-	scaffold protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
SQH45289.1|2734919_2736539_-|portal	phage portal protein, lambda family	portal	K7P6U7	Enterobacteria_phage	62.8	9.8e-189
SQH45290.1|2736496_2736700_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
SQH45291.1|2736683_2738615_-|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
SQH45292.1|2738586_2739132_-|terminase	terminase	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
SQH45293.1|2739417_2739819_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
SQH45294.1|2740045_2740516_-|lysis	bacteriophage lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.8	1.2e-54
SQH45295.1|2740512_2741052_-	Phage endolysin R	NA	S5MQK2	Escherichia_phage	72.0	4.4e-77
SQH45296.1|2741029_2741248_-	Lysis protein S	NA	H9C183	Pectobacterium_phage	46.4	5.6e-07
SQH45297.1|2741881_2742436_-	putative bacteriophage protein	NA	A0A0P0ZC44	Stx2-converting_phage	91.4	1.1e-54
SQH45298.1|2742706_2743261_-	putative bacteriophage protein	NA	A0A0U2S606	Escherichia_phage	64.8	1.7e-63
SQH45299.1|2743257_2743554_-	Protein of uncharacterised function (DUF1364)	NA	K7P7Q1	Enterobacteria_phage	79.1	3.0e-35
SQH45300.1|2743535_2743730_-	Phage protein	NA	S4TNP0	Salmonella_phage	61.5	6.1e-13
SQH45301.1|2743726_2744326_-	IrsA	NA	A0A0U2RT94	Escherichia_phage	81.9	1.5e-94
SQH45302.1|2744389_2744692_-	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQH45303.1|2745172_2745679_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45304.1|2745981_2746359_-	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	36.8	5.1e-16
SQH45305.1|2746371_2746833_-	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	74.8	1.0e-66
SQH45306.1|2746825_2747833_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	67.5	1.5e-123
SQH45307.1|2747879_2748374_-	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA	NA
SQH45308.1|2748360_2748615_-	CRO	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
SQH45309.1|2748711_2749137_+	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	56.3	9.3e-14
SQH45310.1|2749446_2749635_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45311.1|2749579_2749759_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45312.1|2750189_2750474_+	DNA breaking-rejoining protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
SQH45313.1|2750548_2750884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45314.1|2751024_2753715_+	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.3	1.1e-115
SQH45315.1|2753707_2754412_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	75.5	1.3e-89
SQH45316.1|2754574_2754895_+	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
SQH45317.1|2754887_2755220_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	60.6	3.1e-09
SQH45318.1|2755216_2755720_+	Eaa protein	NA	A0A075B8H2	Enterobacteria_phage	92.3	6.0e-36
SQH45319.1|2755769_2756006_+	excisionase	NA	NA	NA	NA	NA
SQH45320.1|2755995_2757138_+	Integrase	NA	O21929	Phage_21	80.0	1.8e-173
SQH45321.1|2757251_2758502_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
SQH45322.1|2758601_2759339_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SQH45323.1|2759335_2759665_+	putative secreted protein	NA	NA	NA	NA	NA
SQH45324.1|2759676_2760138_+	mutT family protein	NA	NA	NA	NA	NA
SQH45325.1|2760191_2761298_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
>prophage 9
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	2935571	2963078	4791042	tail,transposase	Salmonella_phage(76.67%)	33	NA	NA
SQH45496.1|2935571_2938184_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
SQH45497.1|2938547_2938802_+	Gifsy-2 prophage MsgA	NA	S4TNM0	Salmonella_phage	95.2	1.0e-36
SQH45498.1|2939072_2939759_+	gifsy-2 prophage protein	NA	NA	NA	NA	NA
SQH45499.1|2940118_2940460_+	Uncharacterised ACR, COG2135	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	65.6	3.6e-16
SQH45500.1|2940591_2940840_-|transposase	transposase (remnant)	transposase	A0A0P0ZBS5	Stx2-converting_phage	66.7	4.0e-25
SQH45501.1|2941107_2942076_-	Fis family transcriptional regulator	NA	Q9MBL9	Phage_Gifsy-2	98.4	1.6e-191
SQH45502.1|2942170_2942554_+|tail	phage tail-fiber asembly protein	tail	A0A1B0VCD0	Salmonella_phage	63.4	5.1e-19
SQH45503.1|2943196_2943715_-|tail	bacteriophage tail protein	tail	A0A0U2QV64	Escherichia_phage	51.4	2.5e-45
SQH45504.1|2943729_2945370_-|tail	Long tail fiber protein p37 Protein Gp37; Receptor-recognizing protein	tail	A0A1B0VFW4	Salmonella_phage	65.5	6.1e-146
SQH45505.1|2945369_2946050_-	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	99.1	6.2e-129
SQH45506.1|2946046_2947246_-	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	98.2	7.0e-216
SQH45507.1|2947246_2947600_-	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	97.4	2.1e-59
SQH45508.1|2947599_2948352_-	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	71.3	2.7e-93
SQH45509.1|2948415_2949141_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH45510.1|2949143_2950208_-	putative bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	85.9	8.8e-162
SQH45511.1|2950210_2950513_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
SQH45512.1|2950512_2951088_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
SQH45513.1|2951087_2952824_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	99.7	0.0e+00
SQH45514.1|2952774_2952981_-	Uncharacterised protein	NA	R9VWB9	Serratia_phage	74.1	5.1e-18
SQH45515.1|2952977_2953235_-	phage protein	NA	T1S9K2	Salmonella_phage	90.6	4.7e-37
SQH45516.1|2953248_2953944_-	replication protein O of prophage CP-933X	NA	G8C7U6	Escherichia_phage	47.0	4.5e-58
SQH45517.1|2953940_2954867_-	phage replication protein O	NA	A0A0M5M7Y1	Salmonella_phage	77.1	1.1e-123
SQH45518.1|2954958_2955279_-	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
SQH45519.1|2955298_2955535_-	phage regulatory protein	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
SQH45520.1|2955664_2956069_+	DNA-binding protein	NA	H6WRX4	Salmonella_phage	100.0	4.2e-72
SQH45521.1|2956356_2956473_+	Gifsy-1 prophage protein	NA	NA	NA	NA	NA
SQH45522.1|2956465_2956624_+	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
SQH45523.1|2956708_2956996_+	Gifsy-1 prophage protein	NA	H6WRX2	Salmonella_phage	100.0	3.0e-48
SQH45524.1|2957122_2960050_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.1	0.0e+00
SQH45525.1|2960060_2961170_+	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	100.0	7.1e-207
SQH45526.1|2961212_2961452_+	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
SQH45527.1|2961492_2961741_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
SQH45528.1|2961785_2963078_+	Integrase	NA	S4TSP2	Salmonella_phage	100.0	3.4e-253
>prophage 10
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	3393532	3401436	4791042	transposase	Salmonella_phage(57.14%)	9	NA	NA
SQH45909.1|3393532_3394858_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.5	1.0e-103
SQH45910.1|3395073_3395928_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQH45911.1|3395978_3396413_-	cation efflux system protein CusA	NA	NA	NA	NA	NA
SQH45912.1|3397463_3397826_+	translocase	NA	I1TED9	Salmonella_phage	99.2	1.1e-60
SQH45913.1|3397822_3398749_+	bactoprenol glucosyl transferase	NA	I1TED8	Salmonella_phage	97.4	4.9e-169
SQH45914.1|3398741_3400382_+	putative inner membrane protein	NA	B9UDL6	Salmonella_phage	37.5	8.7e-84
SQH45915.1|3400438_3400597_-	Uncharacterised protein	NA	A0A1W5PUZ7	Salmonella_phage	67.3	8.4e-13
SQH45916.1|3400768_3400987_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	76.7	2.3e-16
SQH45917.1|3401163_3401436_+|transposase	transposase	transposase	U5P429	Shigella_phage	86.8	2.8e-32
>prophage 11
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	3452819	3511954	4791042	protease,transposase,tRNA	Bacillus_phage(25.0%)	50	NA	NA
SQH45968.1|3452819_3453737_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQH45969.1|3453733_3454186_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQH45970.1|3454186_3454603_-	copper efflux regulator	NA	NA	NA	NA	NA
SQH45971.1|3454712_3457214_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.1	1.5e-111
SQH45972.1|3457367_3458195_+	Secreted protein	NA	NA	NA	NA	NA
SQH45973.1|3459276_3459756_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQH45974.1|3459873_3461526_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQH45975.1|3461698_3462919_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQH45976.1|3463133_3464810_+	transport protein	NA	NA	NA	NA	NA
SQH45977.1|3464858_3466208_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQH45978.1|3466315_3467287_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQH45979.1|3467283_3468246_-	ferrochelatase	NA	NA	NA	NA	NA
SQH45980.1|3468474_3469119_-	adenylate kinase	NA	NA	NA	NA	NA
SQH45981.1|3469360_3471235_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	9.8e-116
SQH45982.1|3471345_3471951_-	recombination protein RecR	NA	NA	NA	NA	NA
SQH45983.1|3471950_3472280_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQH45984.1|3474367_3474919_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQH45985.1|3475071_3475449_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQH45986.1|3475529_3476045_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQH45987.1|3476058_3476226_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH45988.1|3476295_3477231_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.1	7.4e-64
SQH45989.1|3477272_3480635_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQH45990.1|3480753_3481407_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQH45991.1|3481548_3482742_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQH45992.1|3482764_3485914_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQH45993.1|3486409_3486784_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQH45994.1|3486811_3487030_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQH45995.1|3487208_3487760_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQH45996.1|3487877_3488348_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH45997.1|3488549_3488810_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH45998.1|3489034_3490585_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQH45999.1|3490893_3491205_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQH46000.1|3491237_3491807_-	lipoprotein	NA	NA	NA	NA	NA
SQH46001.1|3492021_3492882_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQH46002.1|3492981_3494268_-	ammonium transporter	NA	NA	NA	NA	NA
SQH46003.1|3494299_3494638_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQH46004.1|3494850_3496632_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	4.1e-39
SQH46005.1|3496624_3498397_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.6	1.8e-50
SQH46006.1|3498437_3498896_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH46007.1|3499008_3500064_+	lyase	NA	NA	NA	NA	NA
SQH46008.1|3500113_3500932_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQH46009.1|3501032_3502733_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQH46010.1|3502797_3503493_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.4	1.2e-87
SQH46011.1|3503598_3503997_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQH46012.1|3504100_3504475_-	competence protein ComEA	NA	NA	NA	NA	NA
SQH46013.1|3504624_3506496_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQH46014.1|3506786_3507059_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQH46015.1|3507267_3509622_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.3	4.7e-224
SQH46016.1|3509807_3511079_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQH46017.1|3511330_3511954_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 12
LS483434	Salmonella enterica subsp. enterica serovar Stanley strain NCTC5716 genome assembly, chromosome: 1	4791042	4546582	4609466	4791042	plate,capsid,holin,tRNA,portal,integrase,head,tail,lysis	Salmonella_phage(41.46%)	70	4546375:4546421	4577354:4577400
4546375:4546421	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQH46920.1|4546582_4546999_+	Uncharacterised protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
SQH46921.1|4547033_4547252_-	DNA-binding transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
SQH46922.1|4547329_4548499_-	phage late control gene D	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
SQH46923.1|4548495_4548978_-	gp25	NA	S4TUC3	Salmonella_phage	94.4	1.3e-80
SQH46924.1|4548992_4551434_-	gp24	NA	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
SQH46925.1|4551578_4551914_-|tail	phage tail protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
SQH46926.1|4551976_4552495_-|tail	major tail sheath protein FII	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
SQH46927.1|4552510_4553698_-|tail	bacteriophage major tail sheath protein FI	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
SQH46928.1|4554401_4556144_-	gp19	NA	A0A0M3ULF6	Salmonella_phage	93.4	1.3e-255
SQH46929.1|4556154_4556685_-|tail	orf38; p2 I-like tail protein	tail	A0A0M4R4W9	Salmonella_phage	99.4	9.2e-104
SQH46930.1|4556677_4557586_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
SQH46931.1|4557592_4557940_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
SQH46932.1|4557936_4558578_-|plate	baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
SQH46933.1|4558654_4559998_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH46934.1|4560035_4560503_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
SQH46935.1|4560495_4560963_-|tail	P2 phage tail completion protein R	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
SQH46936.1|4561070_4561484_-|lysis	phage lysis regulatory protein	lysis	O80310	Escherichia_phage	59.9	8.4e-36
SQH46937.1|4561480_4561990_-	glycoside hydrolase	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
SQH46938.1|4561973_4562195_-|holin	prophage Hp1 family holin	holin	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
SQH46939.1|4562185_4562389_-	phage Tail Protein X	NA	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
SQH46940.1|4562388_4562889_-|head	phage head completion protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
SQH46941.1|4562986_4563745_-	gpM	NA	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
SQH46942.1|4563748_4564909_-|capsid	phage major capsid protein P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
SQH46943.1|4564940_4565804_-|capsid	phage capsid scaffolding protein GpO	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
SQH46944.1|4565968_4567738_+	Terminase, ATPase subunit	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
SQH46945.1|4567737_4568775_+|portal	phage portal protein pbsx family	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
SQH46946.1|4569177_4569279_-	Uncharacterised protein	NA	A0A0M4RE72	Salmonella_phage	87.9	3.6e-09
SQH46947.1|4569485_4569917_+	Uncharacterised protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
SQH46948.1|4570050_4571091_+	Fic protein family	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
SQH46949.1|4571463_4573740_-	replication gene A protein	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
SQH46950.1|4573729_4574005_-	gp83	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
SQH46951.1|4574001_4574226_-	C4-type zinc finger protein, DksA/TraR family	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
SQH46952.1|4574357_4574528_-	11.3 kDa protein in GpA 5'region	NA	Q7Y4C1	Escherichia_virus	65.9	2.8e-06
SQH46953.1|4574527_4574752_-	8.3 kDa protein in GpA 5'region	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
SQH46954.1|4574815_4575316_-	Replication protein (GpB)	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
SQH46955.1|4575485_4575758_-	Cox protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
SQH46956.1|4575894_4576188_+	phage repressor protein c	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
SQH46957.1|4576257_4577238_+|integrase	Puataive integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
SQH46958.1|4577422_4577923_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
4577354:4577400	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
SQH46959.1|4578073_4578772_+	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
SQH46960.1|4578768_4580142_+	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
SQH46961.1|4580192_4580588_-	membrane protein	NA	NA	NA	NA	NA
SQH46962.1|4580599_4581289_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
SQH46963.1|4581358_4581979_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
SQH46964.1|4582308_4583292_+	transport system periplasmic binding protein	NA	NA	NA	NA	NA
SQH46965.1|4583310_4583826_+	membrane transport protein	NA	NA	NA	NA	NA
SQH46966.1|4583818_4585126_+	integral membrane transport protein	NA	NA	NA	NA	NA
SQH46967.1|4585284_4585956_-	protein yiiY	NA	NA	NA	NA	NA
SQH46968.1|4586586_4587621_+	rhamnose-proton symporter	NA	NA	NA	NA	NA
SQH46969.1|4587617_4588466_-	transcriptional activator RhaR	NA	NA	NA	NA	NA
SQH46970.1|4588618_4589455_-	L-rhamnose operon regulatory protein	NA	NA	NA	NA	NA
SQH46971.1|4589742_4591212_+	rhamnulokinase	NA	NA	NA	NA	NA
SQH46972.1|4591208_4592468_+	L-rhamnose isomerase	NA	NA	NA	NA	NA
SQH46973.1|4592610_4593438_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
SQH46974.1|4593564_4594713_+	Lactaldehyde reductase	NA	NA	NA	NA	NA
SQH46975.1|4594709_4595024_+	L-rhamnose mutarotase	NA	NA	NA	NA	NA
SQH46976.1|4595112_4595661_-	putative DNA-binding protein	NA	NA	NA	NA	NA
SQH46977.1|4595761_4596421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQH46978.1|4596420_4596744_+	Inner membrane protein	NA	NA	NA	NA	NA
SQH46979.1|4597099_4598200_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH46980.1|4598382_4599414_+	membrane protein	NA	NA	NA	NA	NA
SQH46981.1|4599681_4600518_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
SQH46982.1|4603775_4604678_+	formate dehydrogenase-O subunit beta	NA	NA	NA	NA	NA
SQH46983.1|4604674_4605310_+	formate dehydrogenase-O gamma subunit	NA	NA	NA	NA	NA
SQH46984.1|4605306_4606236_+	FdhE protein	NA	NA	NA	NA	NA
SQH46985.1|4606282_4606573_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
SQH46986.1|4606573_4606885_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH46987.1|4607102_4608017_+	acetyl esterase	NA	A0A2K9L5W3	Tupanvirus	51.9	3.1e-06
SQH46988.1|4608042_4608984_-	acetyltransferase	NA	NA	NA	NA	NA
SQH46989.1|4609028_4609466_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
