The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	226126	313568	1993258	transposase,tail,head,tRNA,protease,plate	Haemophilus_phage(48.98%)	95	NA	NA
SQH35268.1|226126_226831_-	phage repressor	NA	F6MII3	Haemophilus_phage	33.2	7.4e-24
SQH35270.1|227330_229313_+|transposase	phage transposase	transposase	A0A0M3LPN5	Mannheimia_phage	54.3	1.8e-184
SQH35273.1|229323_229722_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35275.1|229773_230655_+|transposase	phage transposase	transposase	A0A0M3LP72	Mannheimia_phage	75.1	1.1e-117
SQH35276.1|230665_230962_+	sulfate transport protein cysz	NA	NA	NA	NA	NA
SQH35277.1|230970_231162_+	Uncharacterised protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
SQH35278.1|231162_231780_+	sulfate transport protein cysz	NA	A0A0M3LQ92	Mannheimia_phage	58.6	2.0e-65
SQH35279.1|231978_232176_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35280.1|232184_232343_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35281.1|232339_232507_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35282.1|232512_232890_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35283.1|233003_233552_+	Uncharacterised protein	NA	A0A0M3LPP6	Mannheimia_phage	51.9	3.3e-48
SQH35284.1|233541_233940_+	Mu-like phage E16 protein	NA	F6MIJ6	Haemophilus_phage	43.7	5.3e-19
SQH35285.1|233966_234518_+	putative prophage antirepressor	NA	Q71TC0	Escherichia_phage	39.4	6.8e-17
SQH35286.1|235013_235649_+	phage anti-repressor protein	NA	A0A0P0ZG08	Escherichia_phage	41.4	7.4e-15
SQH35287.1|235659_235878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35288.1|235983_236412_+	Mor transcription activator family	NA	F6MIJ8	Haemophilus_phage	42.3	3.3e-27
SQH35289.1|236492_237041_+	n-acetylmuramoyl-l-alanine amidase-like protein	NA	F6MIJ9	Haemophilus_phage	72.1	1.4e-78
SQH35290.1|237040_237208_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35291.1|237204_237495_+	Protein of uncharacterised function (DUF2644)	NA	F6MIK0	Haemophilus_phage	58.7	5.7e-15
SQH35292.1|237494_237752_+	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA	NA
SQH35293.1|237875_238133_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35294.1|238132_238399_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35295.1|238400_238904_+	DNA-binding protein	NA	F6MIK6	Haemophilus_phage	51.8	1.2e-44
SQH35296.1|238900_239044_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35297.1|239033_240674_+	phage protein	NA	B7SDN0	Haemophilus_phage	78.5	5.3e-251
SQH35298.1|240753_242376_+	Mu-like prophage FluMu protein gp29	NA	B7SDN1	Haemophilus_phage	68.3	2.4e-203
SQH35299.1|242359_243661_+|head	SPP1 family phage head morphogenesis protein	head	B7SDN5	Haemophilus_phage	68.8	3.5e-173
SQH35300.1|243796_244213_+|tail	phage virion morphogenesis (tail completion) protein	tail	B7SDN8	Haemophilus_phage	71.7	1.4e-51
SQH35301.1|244494_245532_+	Mu phage protein I	NA	B7SDN9	Haemophilus_phage	46.4	9.4e-68
SQH35302.1|245531_246455_+	Mu bacteriophage protein T	NA	B7SDP1	Haemophilus_phage	74.6	3.9e-134
SQH35303.1|246518_246824_+	Uncharacterised protein	NA	B7SDP3	Haemophilus_phage	50.0	2.8e-20
SQH35304.1|246833_247265_+	Mu-like prophage protein GP36	NA	B7SDP4	Haemophilus_phage	60.9	3.5e-37
SQH35305.1|247248_247911_+	Mu-like prophage protein gp37	NA	B7SDP5	Haemophilus_phage	44.7	1.2e-44
SQH35306.1|247882_248065_+	Uncharacterised protein	NA	A0A0M3LQM9	Mannheimia_phage	64.8	8.2e-12
SQH35307.1|248057_249473_+|tail	bacteriophage Mu tail sheath family protein	tail	B7SDP8	Haemophilus_phage	62.6	2.3e-157
SQH35308.1|249482_249854_+	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	66.7	3.6e-38
SQH35309.1|249853_250195_+	Uncharacterised protein	NA	A0A0M3LSI2	Mannheimia_phage	51.4	1.1e-20
SQH35310.1|250443_251211_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	49.8	8.8e-63
SQH35311.1|251261_251771_-	ISHin1, family IS3	NA	A0A1B1P776	Bacillus_phage	31.6	1.8e-08
SQH35312.1|251878_254158_+|tail	phage tail length determination protein	tail	A0A0M3LPB6	Mannheimia_phage	48.7	3.4e-155
SQH35313.1|254161_255499_+	putative phage virion protein	NA	F6MIL2	Haemophilus_phage	41.2	4.6e-91
SQH35314.1|255488_256613_+	bacteriophage Mu P family protein	NA	F6MIL3	Haemophilus_phage	72.4	1.6e-145
SQH35315.1|256622_257258_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	58.7	3.3e-63
SQH35316.1|257327_257678_+	phage GP46 family protein	NA	A0A0M3LQK5	Mannheimia_phage	70.7	3.9e-42
SQH35317.1|257692_258757_+|tail	Mu phage tail protein gp47	tail	F6MIL6	Haemophilus_phage	62.0	2.0e-118
SQH35318.1|258753_259350_+	Uncharacterized protein conserved in bacteria (DUF2313)	NA	F6MIL7	Haemophilus_phage	63.5	3.0e-66
SQH35319.1|259353_261381_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	61.1	1.0e-166
SQH35320.1|261393_262020_+	HP1	NA	Q94MX9	Haemophilus_virus	51.5	2.1e-30
SQH35321.1|262012_262501_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	56.2	1.9e-47
SQH35322.1|262676_262796_+	mu com-like protein	NA	NA	NA	NA	NA
SQH35323.1|262857_263703_+	D12 class N6 adenine-specific DNA methyltransferase	NA	F6MIM2	Haemophilus_phage	71.4	3.1e-117
SQH35324.1|263741_264005_-	Uncharacterised protein	NA	F6MIM3	Haemophilus_phage	79.1	1.4e-33
SQH35325.1|264367_264853_-	lipooligosaccharide biosynthesis protein	NA	NA	NA	NA	NA
SQH35326.1|264879_265527_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2I2L4Y7	Orpheovirus	45.7	1.8e-40
SQH35327.1|267007_267688_+	diadenosine tetraphosphatase and related serine/threonine protein phosphatase	NA	NA	NA	NA	NA
SQH35328.1|268296_269370_-	membrane-bound lytic murein transglycosylase C	NA	NA	NA	NA	NA
SQH35329.1|269384_269657_-	protein that protects iron-sulfur proteins against oxidative damage	NA	NA	NA	NA	NA
SQH35330.1|269634_270771_-	adenine DNA glycosylase	NA	NA	NA	NA	NA
SQH35331.1|270947_271160_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH35332.1|271234_271918_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQH35333.1|272093_273326_+|protease	protease with a role in cell division	protease	V5R8R0	Arthrobacter_phage	35.4	7.1e-06
SQH35334.1|273325_274168_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
SQH35335.1|274228_274972_-	UDP-glucose--lipooligosaccharide glucosyltransferase	NA	A0A1D8KPY1	Synechococcus_phage	27.0	4.1e-09
SQH35336.1|274985_275339_-	Lipooligosachharide biosynthesis protein Lex2A	NA	NA	NA	NA	NA
SQH35337.1|275534_275651_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQH35339.1|275647_277936_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	49.7	1.9e-84
SQH35341.1|277968_279363_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	32.7	4.0e-05
SQH35346.1|279996_280494_+	lipid hydroperoxide peroxidase	NA	NA	NA	NA	NA
SQH35349.1|280712_281537_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
SQH35351.1|281679_282303_-	LexA repressor	NA	A5LH73	Enterobacteria_phage	41.1	2.2e-11
SQH35353.1|282557_284990_+	glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
SQH35356.1|285068_286403_-	respiratory NADH dehydrogenase 2/cupric reductase	NA	NA	NA	NA	NA
SQH35358.1|286606_287929_-	anaerobic C4-dicarboxylate transporter DcuB	NA	NA	NA	NA	NA
SQH35360.1|288175_288622_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQH35362.1|288635_289145_+	protein export chaperone	NA	NA	NA	NA	NA
SQH35370.1|289211_289541_-	DNA polymerase III subunit alpha	NA	NA	NA	NA	NA
SQH35374.1|289689_291342_-	Phosphoglucomutase PgmB	NA	A0A1X9I671	Streptococcus_phage	34.8	5.9e-80
SQH35375.1|291580_295060_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.8	1.6e-191
SQH35378.1|295098_296640_-	threonine deaminase	NA	NA	NA	NA	NA
SQH35380.1|296718_298557_-	Dihydroxyacid dehydratase	NA	NA	NA	NA	NA
SQH35382.1|298598_299267_-	acetolactate synthase isozyme II large subunit	NA	NA	NA	NA	NA
SQH35383.1|299512_301039_+	sodium-dependent transporter	NA	NA	NA	NA	NA
SQH35386.1|301040_301136_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35388.1|301268_301982_-	UDP-2,3-diacylglucosamine pyrophosphatase	NA	NA	NA	NA	NA
SQH35390.1|302067_302790_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQH35393.1|302791_304201_+	repressor protein for FtsI	NA	NA	NA	NA	NA
SQH35395.1|304320_306669_+	exported protein required for envelope biosynthesis and integrity	NA	NA	NA	NA	NA
SQH35397.1|306756_308475_-|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH35402.1|308559_310419_-	ATP-dependent DNA helicase	NA	A0A1V0SBK0	Catovirus	37.1	1.9e-87
SQH35403.1|310420_310726_-	frataxin, iron-binding and oxidizing protein	NA	NA	NA	NA	NA
SQH35406.1|310822_310939_+	Predicted small periplasmic lipoprotein	NA	NA	NA	NA	NA
SQH35408.1|310986_312234_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
SQH35410.1|312439_313066_+	DNA-binding response regulator in two-component regulatory system with NarQ or NarX	NA	NA	NA	NA	NA
SQH35412.1|313127_313568_-|protease	ATP-dependent Lon protease	protease	NA	NA	NA	NA
>prophage 2
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	325716	383173	1993258	terminase,integrase,capsid,tail,head,tRNA,lysis,portal,holin,plate	Mannheimia_phage(51.35%)	70	314979:315038	383547:386937
314979:315038	attL	AACCTGGCGGTGCCCTACTCTCACATGGGGAAACCCCACACTACCATCGGCATTACAGCG	NA	NA	NA	NA
SQH35434.1|325716_326376_-|tRNA	pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)	tRNA	NA	NA	NA	NA
SQH35436.1|326378_329150_-	RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	38.4	1.5e-19
SQH35439.1|329335_330085_+	DNA-binding transcriptional activator	NA	A0A077SK06	Escherichia_phage	29.5	2.4e-17
SQH35441.1|330314_332084_+	L-fucose isomerase	NA	NA	NA	NA	NA
SQH35443.1|332156_333569_+	L-fuculokinase	NA	NA	NA	NA	NA
SQH35445.1|333582_334017_+	L-fucose mutarotase	NA	NA	NA	NA	NA
SQH35447.1|334036_334687_+	L-fuculose phosphate aldolase	NA	NA	NA	NA	NA
SQH35449.1|334725_336012_+	L-fucose transporter	NA	NA	NA	NA	NA
SQH35451.1|336539_337388_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.3	6.1e-33
SQH35454.1|337525_338911_-	di-and tricarboxylate transporter	NA	NA	NA	NA	NA
SQH35455.1|339049_339865_-	shikimate 5-dehydrogenase-like protein	NA	NA	NA	NA	NA
SQH35457.1|339874_340678_-	serine acetyltransferase	NA	NA	NA	NA	NA
SQH35459.1|340694_341702_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQH35461.1|341775_344307_-	adenylate cyclase	NA	NA	NA	NA	NA
SQH35463.1|344611_345823_+	heme biosynthesis-like protein	NA	NA	NA	NA	NA
SQH35465.1|345833_347120_+	protoheme IX synthesis protein	NA	NA	NA	NA	NA
SQH35469.1|347176_347392_-	phosphate starvation inducible protein	NA	NA	NA	NA	NA
SQH35471.1|348394_349405_-|portal	portal vertex protein	portal	Q19UT6	Mannheimia_phage	61.8	4.6e-120
SQH35473.1|349414_350014_-	Terminase, ATPase subunit	NA	E5E3S6	Burkholderia_phage	50.8	3.2e-52
SQH35475.1|350023_351190_-	Terminase, ATPase subunit	NA	A0A0M3LRV4	Mannheimia_phage	72.5	2.4e-157
SQH35477.1|351256_351349_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35480.1|351617_352262_+	prophage antirepressor	NA	D0UIM5	Aggregatibacter_phage	35.0	5.3e-29
SQH35482.1|352439_353255_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.7	1.2e-62
SQH35485.1|353276_354326_+|capsid	major capsid protein	capsid	Q19UT3	Mannheimia_phage	51.6	4.4e-89
SQH35487.1|354337_354988_+|terminase	terminase, endonuclease subunit	terminase	Q19US0	Mannheimia_phage	45.5	4.1e-45
SQH35488.1|355280_355787_+|head	putative phage head completion	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.3e-33
SQH35489.1|355786_355996_+|tail	Probable bacteriophage tail protein X	tail	E5G6M9	Salmonella_phage	40.6	4.5e-06
SQH35490.1|355997_356219_+|holin	holin	holin	NA	NA	NA	NA
SQH35492.1|356211_356730_+	phage-like lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
SQH35494.1|356714_357065_+|lysis	phage lysis regulatory protein, LysB family	lysis	NA	NA	NA	NA
SQH35496.1|357239_357455_+	DnaK suppressor protein	NA	A0A0M3LS11	Mannheimia_phage	46.6	5.3e-10
SQH35498.1|357451_357922_+|tail	Probable bacteriophage tail completion protein	tail	E5G6N3	Salmonella_phage	46.0	5.6e-28
SQH35500.1|357921_358380_+|tail	Probable bacteriophage tail completion protein	tail	A0A2H4J927	uncultured_Caudovirales_phage	50.4	1.3e-26
SQH35502.1|358357_358630_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35503.1|358699_361435_+|tail	phage-related tail protein	tail	A0A0A7NRZ9	Enterobacteria_phage	36.1	1.8e-86
SQH35506.1|361511_361679_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35508.1|361656_362109_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35510.1|362215_362809_+|plate	phage P2-like baseplate assembly protein	plate	A0A0M3LPY9	Mannheimia_phage	66.5	2.7e-43
SQH35512.1|362810_363149_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
SQH35514.1|363145_364060_+|plate	phage-like baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.2	1.5e-93
SQH35518.1|364046_364586_+|tail	Probable bacteriophage tail protein gpI	tail	Q19UQ4	Mannheimia_phage	53.5	6.0e-50
SQH35520.1|364594_366841_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	59.4	3.6e-189
SQH35522.1|366852_367455_+	Uncharacterised protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
SQH35524.1|367451_367952_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	62.3	1.7e-51
SQH35526.1|368127_368247_+	mu com-like protein	NA	NA	NA	NA	NA
SQH35528.1|368303_369149_+	D12 class N6 adenine-specific DNA methyltransferase	NA	F6MIM2	Haemophilus_phage	72.8	2.3e-120
SQH35530.1|369593_370778_+|tail	phage tail sheath-like protein	tail	A0A1S6KZY7	Salmonella_phage	48.7	6.0e-103
SQH35533.1|370781_371288_+|tail	phage-related tail protein	tail	Q19UP8	Mannheimia_phage	59.5	7.1e-53
SQH35535.1|371356_371656_+|tail	Probable bacteriophage tail protein E	tail	A0A0F7LBN9	Escherichia_phage	40.7	4.4e-10
SQH35537.1|371655_371802_+	phage p2 gpe	NA	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
SQH35540.1|371969_372131_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35542.1|372130_372568_+|tail	phage-related tail protein	tail	A0A0M3LQ18	Mannheimia_phage	56.7	1.0e-39
SQH35545.1|372567_373767_+	regulator of late gene expression	NA	R9QBT3	Mannheimia_phage	51.7	1.1e-101
SQH35548.1|373792_374032_-	Excalibur calcium-binding domain	NA	NA	NA	NA	NA
SQH35549.1|374042_375212_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35552.1|375221_375911_-	phage repressor	NA	A0A0M3LPF9	Mannheimia_phage	34.9	1.0e-30
SQH35554.1|376029_376278_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	Q19UN8	Mannheimia_phage	49.1	1.4e-06
SQH35556.1|376274_376517_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35558.1|376739_376982_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35560.1|377046_377289_+	Uncharacterised protein	NA	Q19UN6	Mannheimia_phage	68.1	1.2e-21
SQH35562.1|377379_377640_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35564.1|377657_378038_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35566.1|378041_378284_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35568.1|378280_378394_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35570.1|378409_378718_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35572.1|378727_380914_+	Probable bacteriophage replication protein A	NA	Q94N00	Haemophilus_virus	42.4	3.5e-165
SQH35574.1|380932_381124_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35576.1|381134_381344_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH35579.1|381357_381879_+	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	42.4	7.3e-29
SQH35581.1|382117_383173_+|integrase	Prophage integrase	integrase	K7PKD7	Enterobacteria_phage	36.2	1.3e-56
383547:386937	attR	AACCTGGCGGTGCCCTACTCTCACATGGGGAAACCCCACACTACCATCGGCATTACAGCGTTTCACTTCTGAGTTCGGTATGGTCTCAGGTGGGTCCACCGCACTATCGCCGCCAGGATAATTCTTTGATAACTCGTCTTCTCTTTTATCTCTCGTCTCTTTTATCTCTCGTTACTCAGTCTTTACTCTACCTTTCACTCGTTCTTATTGGTCACAAGCTGAACTCAATTTCCTTTCTATTAAGTCTTCTATATTTACTTTTCTTTGTTTAGTCTTTTACTTCGGTTTCCGCTCTACTTTTATTTGCTTCGCTTTTCATCTCTTACTTCACTTAGCTCCCAAAAACACTTGAGCGTTGTATAGTTAAGCCTCTCGGGCAATTAGTATCTGTTAGCTCAATGTATCACTACACTTACACACCTGACCTATCTACGTCGTAGTCTACAACAACCCTTACTATCTCTTAGATTGGGAGAACTCATCTCTTGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCACTTAGCTACCCGGCAATGCGTCTGGCGACACAACCGGAACACCAGTGGTGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCAACCAATTCTCCTACGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTACTTTCGTACCTGCTCGACTTGTCTGTCTCGCAGTTAAGCTTGCTTATACCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCAAACCTTCGTGCTCCTCCGTTACGCTTTGGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGAGACCACGTTCCGCAATCTTCGTTAGAACATCAAACGTTAAAGGGTGGTATTTCAAGGTCGACTCCAACAATACTGGCGTATCATCTTCTTAGTCTCCCACCTATCCTACACATCAAAATTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAGGTGCTTCTCTTGCGATGACACCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACCTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTCACTTCGACCGGTTCAACCTTCAGGGGCTAGCCCTTACAATCTACGCCGGCGCACCTTCTCCCGAAGTTACGGTGCTATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGTATTCTCTACCTGACCACCTGTGTCGGTTTTCAGTACGGTTTAGTAAAGCCTTTCGCTTAGTGGCTTTTCCTGGAAGTGTGGTATCAGTTACTTCAGCTCCGTAGAGCCTCGTCATCATCTCTCTGTGTTAAGGAAGTCCGGATTTGCCTAAACTTCCCACCTACCAACTTAAACGCACATATCCAACAGTGCGATAACCTAACCTACTCCGTCCCCACATCGCAGCTTTACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCTTTTCAGCCTCGCCTTAGGAGCCGACTTACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGGCGAACGGGTTTTTCACCCGTTTTATCGTTACTTATGTCAGCATTCGCACTTGTGATACGTCCAGCCCACCTCTCGATGAACCTTCATCCGCTTACACAACGCTCCCCTACCCAACAGGCGTATTAGTGATACGCCTGATGCCGCAGCTTCGGTGCTATATTTCAGCCCCGTTACATCTTCCGCGCAGACCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGCTGTCTAAGCCTTCCCACTTCGTTTCCCACTTAATATAGACTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTCCACGACGGACGTTAGCACCCGCCGTGTGTCTCCTGAGTATCACTCTTTGGTATTCGTAGTTTGCATCGGGTTGGTAATCCGGGATGGACCCCTAGCCGAAACAGTGCTCTACCCCCAAAGGTGTCACCTCAAGGCTCTACCTAAATAGATTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCCTGCAACTCAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTCGCTACAAAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCATCACTTAATCCCACTGCTTCTTTTGGGTGGTTTGACTCGCTTCGCTCCTCTTACCATTGTTTAAGTGCGGTTGCTTTTCATCACCTTCCAATCGGATTAAGTGATGGGGCTCCCACTGCTTGTACGTACAAGGTTTCAGGTTCTATTTCACTCCCCTCACCGGGGTTCTTTTCGCCTTTCCTTCACAGTACTGGTTCACTATCGGTCAATCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCTTCTTCAAACAGGATATCACGTGTCCCGCCCTACTTCTCGTTAGCTTAGTACCACAATATGGTTTTTAGATACGGGATTATCACCCTCTTTGATTGTGCTTCCCAACACATTCTCCTAACTATATTGCTATCACTTACTGGCTCTTTCGCTTTCGCTCGCCGCTACTGACGAAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCTCCCGGTTTGCCTCAACAAGCTATGAATTCACTTGTTGATAGTAGATTCTTCATCTACTGGGTTTCCCCATTCGGATATCTTGGATTAAACGCCTCTTATCGACTCATCCAAGCTTTTCGCAGATTAGCACGTCCTTCTTCGCCTCTGATTGCCAAGGCATCCACCTTGTACGCTTAGTCACTTAACTATACAACCTCAAATGTTTTCAA	NA	NA	NA	NA
>prophage 3
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	717968	802906	1993258	transposase,integrase,terminase,tail,tRNA,holin,plate	Mannheimia_phage(17.74%)	114	717816:717864	769332:769380
717816:717864	attL	CGGACTCTTAATCCGTCGGTCGAGAGTTCGAGCCTCTCACAACCTACCA	NA	NA	NA	NA
SQH36291.1|717968_718994_-|integrase	prophage integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
SQH36293.1|719258_719681_-	Uncharacterised protein	NA	A0A249XZT5	Enterococcus_phage	53.7	4.0e-17
SQH36294.1|719727_720153_-	Uncharacterised protein	NA	A0A2I7QK91	Vibrio_phage	38.5	5.3e-17
SQH36297.1|720291_720729_-	Uncharacterised protein	NA	A0A2K9V3W6	Faecalibacterium_phage	37.0	7.8e-24
SQH36298.1|720732_721215_-	Uncharacterised protein	NA	A0A0M3LS47	Mannheimia_phage	42.0	1.1e-23
SQH36300.1|721272_722436_-	modification methylase Bsp6I-like	NA	A0A2I7RFJ9	Vibrio_phage	46.4	1.3e-89
SQH36302.1|722443_722803_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36304.1|722799_723045_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36306.1|723041_723938_-	recombination associated protein	NA	S4TWL4	Salmonella_phage	44.0	3.8e-57
SQH36308.1|724063_724870_-	Uncharacterised protein	NA	A0A0U3TGV3	Pseudomonas_phage	69.6	2.3e-37
SQH36310.1|724933_725368_-	ssDNA-binding protein	NA	L7TJL2	Pseudomonas_virus	35.1	5.7e-19
SQH36312.1|725367_726018_-	Uncharacterised protein	NA	A0A0M3LP90	Mannheimia_phage	71.1	2.6e-84
SQH36315.1|725992_726913_-	recombinational DNA repair protein, rece pathway	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.2e-116
SQH36317.1|726925_727219_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36319.1|727215_727563_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36321.1|727576_728314_-	modification methylase DpnIIB-like	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	6.8e-113
SQH36323.1|728404_729436_-	phage antirepressor protein	NA	D0UIK6	Aggregatibacter_phage	79.8	4.1e-39
SQH36325.1|729425_729677_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36328.1|729819_730107_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36330.1|730492_730678_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36332.1|730837_731986_-	Uncharacterized conserved protein	NA	A0A1S5SAB0	Streptococcus_phage	36.2	1.7e-30
SQH36334.1|731996_732797_-|tRNA	tRNA_anti-like	tRNA	NA	NA	NA	NA
SQH36336.1|732919_733285_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SQH36337.1|733286_733874_-	ning recombination protein	NA	A0A2I7RAC0	Vibrio_phage	49.0	1.3e-37
SQH36339.1|733873_733966_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36341.1|733962_734382_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	75.4	3.3e-56
SQH36343.1|734418_734643_-	Uncharacterised protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
SQH36345.1|734639_735281_-	phage replication protein	NA	NA	NA	NA	NA
SQH36348.1|735265_736033_-	Uncharacterised protein	NA	D0UIL5	Aggregatibacter_phage	44.7	1.8e-39
SQH36351.1|736049_736283_-	Uncharacterised protein	NA	A0A0M3LR73	Mannheimia_phage	58.9	1.9e-13
SQH36355.1|736328_736781_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36357.1|737164_738133_+	phage repressor	NA	A0A0M3LPF9	Mannheimia_phage	30.5	7.0e-17
SQH36358.1|738204_738714_+	ISHin1, family IS3	NA	A0A1B1P776	Bacillus_phage	31.6	1.8e-08
SQH36360.1|738764_739532_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	49.8	8.8e-63
SQH36363.1|739777_740290_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36365.1|740468_740828_+|holin	Putative bacteriophage holin protein	holin	NA	NA	NA	NA
SQH36367.1|740793_741396_+	Putative phage lysozyme	NA	Q7Y5V0	Haemophilus_phage	55.4	3.9e-58
SQH36369.1|741388_741712_+	putative bacteriophage protein	NA	Q7Y5U9	Haemophilus_phage	56.1	9.2e-22
SQH36371.1|741906_742254_-	transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	57.0	5.2e-23
SQH36373.1|742237_742489_-	bacteriophage protein/plasmid stabilization system protein	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
SQH36376.1|742566_743085_+|terminase	Probable bacteriophage terminase, small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	2.1e-20
SQH36378.1|743029_744424_+|terminase	phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	52.9	5.2e-122
SQH36380.1|744425_745742_+	phage-associated protein, HI1409 family	NA	A0A2K9V3H1	Faecalibacterium_phage	32.0	1.8e-47
SQH36382.1|745680_746940_+	phage Mu protein gp30-like protein	NA	E5AGA5	Erwinia_phage	31.2	1.8e-25
SQH36384.1|747065_748139_+	Uncharacterized protein conserved in bacteria	NA	E5AGA6	Erwinia_phage	40.2	9.4e-55
SQH36387.1|748149_748569_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36389.1|748630_749578_+	Uncharacterized protein conserved in bacteria	NA	A0A0N9SG07	Pseudomonas_phage	36.6	2.8e-50
SQH36391.1|749580_749769_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36393.1|749772_750123_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36395.1|750115_750574_+	Mu-like prophage protein gpG	NA	A0A2I7R754	Vibrio_phage	34.5	5.3e-15
SQH36397.1|750573_750933_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36398.1|750934_751444_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36400.1|751424_752504_+	phage-like protein	NA	A0A0N9SJA3	Pseudomonas_phage	46.7	8.3e-59
SQH36402.1|752549_752975_+	Uncharacterised protein	NA	A0A0A1IUI2	Pseudomonas_phage	36.9	2.6e-16
SQH36404.1|752974_753457_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36406.1|753492_753645_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36408.1|753641_755972_+|tail	phage-like minor tail protein	tail	H9EB42	Vibrio_phage	26.8	6.4e-32
SQH36410.1|756046_756619_-	putative prophage antirepressor	NA	I6R977	Salmonella_phage	52.3	3.3e-14
SQH36412.1|756926_757508_+	Uncharacterised protein	NA	I3PGV3	Xanthomonas_phage	27.7	5.7e-06
SQH36414.1|757504_757819_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH36416.1|757815_758778_+	Uncharacterised protein	NA	M4SNA5	Psychrobacter_phage	29.2	1.0e-20
SQH36418.1|758774_759446_+|plate	phage baseplate assembly protein V	plate	A0A0M5M1K7	Salmonella_phage	33.0	3.4e-18
SQH36421.1|759442_759808_+	Uncharacterised protein	NA	A0A1J0MEY0	Pectobacterium_phage	35.4	1.8e-10
SQH36423.1|759800_761237_+	Uncharacterized homolog of phage Mu protein gp47	NA	A0A0N9SH53	Pseudomonas_phage	28.4	4.8e-46
SQH36425.1|761245_761872_+	Protein of uncharacterised function (DUF2612)	NA	A0A0N9SSD8	Pseudomonas_phage	36.9	4.0e-21
SQH36428.1|761868_764154_+|tail	phage tail fiber protein	tail	Q94MY0	Haemophilus_virus	48.3	1.6e-136
SQH36430.1|764153_764777_+	HP1	NA	D0UIH2	Aggregatibacter_phage	45.3	1.2e-17
SQH36433.1|764769_765249_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	55.6	1.8e-45
SQH36435.1|765698_766016_+|integrase	integrase	integrase	A0A0M3LRG1	Mannheimia_phage	55.2	1.1e-24
SQH36437.1|766292_766463_+|integrase	integrase/recombinase	integrase	A0A0M3LQN1	Mannheimia_phage	63.0	1.0e-11
SQH36440.1|766472_766697_+|integrase	integrase	integrase	Q19US1	Mannheimia_phage	66.2	5.4e-21
SQH36442.1|766756_766915_-	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	81.4	3.4e-14
SQH36445.1|766969_767440_-	Probable bacteriophage replication protein A	NA	Q94N00	Haemophilus_virus	39.0	6.6e-21
SQH36447.1|767451_767673_+	mu-like prophage protein gp29	NA	B7SDN1	Haemophilus_phage	69.4	1.5e-20
SQH36449.1|767684_768401_+	Uncharacterised protein	NA	A0A0M3LSH7	Mannheimia_phage	58.2	8.2e-71
SQH36452.1|768543_768960_+|tail	phage virion morphogenesis (tail completion) protein	tail	B7SDN8	Haemophilus_phage	71.5	4.2e-51
SQH36454.1|769490_770216_+	putative methyltransferase	NA	NA	NA	NA	NA
769332:769380	attR	CGGACTCTTAATCCGTCGGTCGAGAGTTCGAGCCTCTCACAACCTACCA	NA	NA	NA	NA
SQH36457.1|770268_770721_+	DNA-binding transcriptional repressor	NA	NA	NA	NA	NA
SQH36465.1|770788_772003_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
SQH36467.1|772062_772443_+	iron-sulfur cofactor synthesis protein NifU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
SQH36469.1|772500_772824_+	FeS cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
SQH36471.1|772836_773361_+	DnaJ-like molecular chaperone specific for IscU	NA	NA	NA	NA	NA
SQH36473.1|773411_774098_+	Protein of uncharacterised function DUF2625	NA	NA	NA	NA	NA
SQH36475.1|774116_775976_+	DnaK-like molecular chaperone	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.6	4.2e-111
SQH36477.1|776017_776359_+	[2Fe-2S] ferredoxin	NA	NA	NA	NA	NA
SQH36479.1|776358_776553_+	IscX	NA	NA	NA	NA	NA
SQH36482.1|776603_777218_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH36484.1|777235_778507_-|tRNA	histidyl tRNA synthetase	tRNA	NA	NA	NA	NA
SQH36486.1|778516_779623_-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	NA	NA	NA	NA	NA
SQH36488.1|779631_780543_-	transcriptional regulator with an N-terminal xre-type HTH domain	NA	NA	NA	NA	NA
SQH36490.1|780614_781154_-	Transformation and Tfp-related protein PilF	NA	NA	NA	NA	NA
SQH36492.1|781254_782406_-	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA
SQH36495.1|782652_783531_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQH36497.1|783895_784777_+	putative periplasmic chelated iron binding protein	NA	NA	NA	NA	NA
SQH36499.1|784776_785697_+	putative ABC-type chelated iron transport system, ATPase component	NA	G9BWD6	Planktothrix_phage	27.3	2.2e-12
SQH36501.1|785700_786549_+	putative ABC-type chelated iron transport system, permease component	NA	NA	NA	NA	NA
SQH36504.1|786541_787357_+	putative ABC-type chelated iron transport system, permease component	NA	NA	NA	NA	NA
SQH36506.1|787450_788098_-	putative transcription activator	NA	NA	NA	NA	NA
SQH36508.1|788108_789053_-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA	NA	NA	NA	NA
SQH36510.1|789074_789812_-	taurine transporter subunit	NA	NA	NA	NA	NA
SQH36513.1|789808_790531_-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	NA	G3M9Y6	Bacillus_virus	34.5	1.9e-27
SQH36514.1|790929_791886_+	CMP-neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
SQH36516.1|792058_793075_+	UDP-galactose-4-epimerase	NA	A0A2K9L1R4	Tupanvirus	48.9	2.5e-89
SQH36518.1|793216_794494_+	integral membrane signal transducer protein	NA	NA	NA	NA	NA
SQH36520.1|794578_795223_+	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	28.1	1.0e-11
SQH36522.1|795382_795985_-	nitrate reductase, cytochrome c-type, periplasmic	NA	NA	NA	NA	NA
SQH36524.1|795999_796443_-	diheme cytochrome C NapB	NA	NA	NA	NA	NA
SQH36525.1|796448_797312_-	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase(NapAB)	NA	NA	NA	NA	NA
SQH36527.1|797311_798145_-	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
SQH36529.1|798206_800690_-	nitrate reductase catalytic subunit	NA	NA	NA	NA	NA
SQH36531.1|800726_801008_-	assembly protein for periplasmic nitrate reductase	NA	NA	NA	NA	NA
SQH36533.1|801000_801531_-	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
SQH36535.1|801736_802081_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH36536.1|802165_802906_-|tRNA	tRNA (m7G46) methyltransferase, SAM-dependent	tRNA	NA	NA	NA	NA
>prophage 4
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	1076409	1095640	1993258	transposase,tail,head	Haemophilus_phage(78.95%)	32	NA	NA
SQH37063.1|1076409_1078386_+|transposase	phage transposase	transposase	A0A0M3LPN5	Mannheimia_phage	53.0	3.4e-191
SQH37066.1|1078396_1078795_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37068.1|1078846_1079728_+|transposase	phage transposase	transposase	A0A0M3LP72	Mannheimia_phage	60.1	1.9e-90
SQH37071.1|1079739_1080036_+	sulfate transport protein cysz	NA	NA	NA	NA	NA
SQH37073.1|1080044_1080236_+	Uncharacterised protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
SQH37075.1|1080236_1080854_+	sulfate transport protein cysz	NA	A0A0M3LQ92	Mannheimia_phage	58.8	6.8e-66
SQH37077.1|1081040_1081238_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37080.1|1081248_1081413_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37082.1|1081409_1081583_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37085.1|1081587_1081836_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37087.1|1082076_1082475_+	Mu-like phage E16 protein	NA	F6MIJ6	Haemophilus_phage	42.9	3.4e-18
SQH37090.1|1082501_1082705_+	KilA-N domain	NA	NA	NA	NA	NA
SQH37093.1|1083177_1083819_+	phage anti-repressor protein	NA	A0A059T6E7	Listeria_phage	43.2	2.5e-10
SQH37096.1|1083829_1084048_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37098.1|1084153_1084582_+	Mor transcription activator family	NA	F6MIJ8	Haemophilus_phage	42.3	3.3e-27
SQH37101.1|1084662_1085211_+	n-acetylmuramoyl-l-alanine amidase-like protein	NA	F6MIJ9	Haemophilus_phage	72.1	1.4e-78
SQH37103.1|1085210_1085378_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37106.1|1085374_1085665_+	Protein of uncharacterised function (DUF2644)	NA	F6MIK0	Haemophilus_phage	58.7	5.7e-15
SQH37108.1|1085664_1085922_+	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA	NA
SQH37110.1|1086045_1086303_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37113.1|1086302_1086569_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37115.1|1086570_1087074_+	DNA-binding protein	NA	F6MIK6	Haemophilus_phage	51.8	1.2e-44
SQH37117.1|1087070_1087214_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37120.1|1087203_1088844_+	phage protein	NA	B7SDN0	Haemophilus_phage	78.5	5.3e-251
SQH37122.1|1088923_1090546_+	Mu-like prophage FluMu protein gp29	NA	B7SDN1	Haemophilus_phage	68.3	2.4e-203
SQH37125.1|1090529_1091831_+|head	SPP1 family phage head morphogenesis protein	head	B7SDN5	Haemophilus_phage	68.8	3.5e-173
SQH37127.1|1091966_1092383_+|tail	phage virion morphogenesis (tail completion) protein	tail	B7SDN8	Haemophilus_phage	71.7	1.4e-51
SQH37129.1|1092664_1093702_+	Mu phage protein I	NA	B7SDN9	Haemophilus_phage	46.4	9.4e-68
SQH37131.1|1093701_1094625_+	Mu bacteriophage protein T	NA	B7SDP1	Haemophilus_phage	74.6	3.9e-134
SQH37133.1|1094688_1094994_+	Uncharacterised protein	NA	B7SDP3	Haemophilus_phage	50.0	2.8e-20
SQH37135.1|1095003_1095435_+	Mu-like prophage protein GP36	NA	B7SDP4	Haemophilus_phage	60.9	3.5e-37
SQH37138.1|1095418_1095640_+	Mu-like prophage protein gp37	NA	B7SDP5	Haemophilus_phage	47.9	2.9e-11
>prophage 5
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	1199782	1207197	1993258	transposase	uncultured_virus(14.29%)	8	NA	NA
SQH37489.1|1199782_1200079_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	38.6	2.0e-07
SQH37492.1|1200081_1200324_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
SQH37494.1|1200381_1200645_-|transposase	ISSoc3 transposase	transposase	A0A1S5RHE3	Helicobacter_phage	67.8	2.4e-28
SQH37496.1|1200690_1201827_+|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	57.0	4.0e-120
SQH37499.1|1201963_1202431_-	anaerobic ribonucleotide reductase activating protein	NA	A0A2H5BH04	Vibrio_virus	58.4	8.0e-51
SQH37501.1|1202678_1204409_-	fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component	NA	W8CYL7	Bacillus_phage	24.3	3.2e-20
SQH37503.1|1204408_1206169_-	fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.4	1.3e-16
SQH37505.1|1206240_1207197_-	thioredoxin reductase, FAD/NAD(P)-binding	NA	A0A1V0SIN1	Klosneuvirus	40.6	2.1e-58
>prophage 6
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	1231130	1239644	1993258		Bacillus_virus(33.33%)	8	NA	NA
SQH37540.1|1231130_1232114_-	dipeptide transporter	NA	G3M9Y6	Bacillus_virus	27.3	3.2e-17
SQH37543.1|1232116_1233109_-	dipeptide transporter	NA	G3M9Y6	Bacillus_virus	31.7	4.0e-15
SQH37544.1|1233118_1234006_-	dipeptide transporter	NA	NA	NA	NA	NA
SQH37546.1|1234020_1235022_-	dipeptide transporter	NA	NA	NA	NA	NA
SQH37548.1|1235111_1237295_-	DNA-dependent ATPase I and helicase II	NA	A7KV33	Bacillus_phage	37.6	1.1e-115
SQH37549.1|1237906_1238536_-	organic radical activating protein	NA	A0A218M2Y8	Acidovorax_phage	35.2	2.9e-11
SQH37551.1|1238542_1238968_-	6-pyruvoyl-tetrahydropterin synthase	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
SQH37553.1|1238960_1239644_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	6.6e-54
>prophage 7
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	1352573	1357718	1993258		Aggregatibacter_phage(33.33%)	8	NA	NA
SQH37731.1|1352573_1353014_-	uncharacterised protein, phage-related	NA	D0UIM3	Aggregatibacter_phage	65.8	1.9e-49
SQH37732.1|1353157_1353508_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37733.1|1353504_1353750_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37734.1|1353746_1354643_-	recombination associated protein	NA	A0A1P8DTT8	Salmonella_phage	45.0	9.3e-56
SQH37735.1|1354767_1355520_-	Uncharacterised protein	NA	A0A2H4FRY7	Salmonella_phage	63.1	5.1e-39
SQH37736.1|1355583_1356018_-	ssDNA-binding protein	NA	L7TJL2	Pseudomonas_virus	35.1	5.7e-19
SQH37737.1|1356017_1356662_-	Uncharacterised protein	NA	A0A0M3LP90	Mannheimia_phage	71.4	4.4e-84
SQH37738.1|1356866_1357718_-	phage antirepressor protein	NA	D0UIK6	Aggregatibacter_phage	42.5	1.2e-55
>prophage 8
LS483429	Haemophilus aegyptius strain NCTC8502 genome assembly, chromosome: 1	1993258	1361183	1444630	1993258	terminase,integrase,tail,protease,bacteriocin,holin,plate	Haemophilus_phage(38.81%)	109	1370675:1370691	1400327:1400343
SQH37744.1|1361183_1362029_-	DNA-damage-inducible protein d	NA	F5A3D6	Riemerella_phage	41.9	9.4e-50
SQH37745.1|1362146_1362803_-	prophage repressor CI	NA	A0A0M3LSL8	Mannheimia_phage	57.9	1.6e-65
SQH37746.1|1362933_1363140_+	cro repressor	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
SQH37747.1|1363160_1363457_+	phage aaphi23	NA	Q7Y5W3	Haemophilus_phage	69.4	3.8e-30
SQH37748.1|1363504_1364173_+	Probable phage repressor protein	NA	D0UIL6	Aggregatibacter_phage	52.1	2.0e-55
SQH37749.1|1364169_1364928_+	Uncharacterised protein	NA	D0UIL5	Aggregatibacter_phage	68.3	1.3e-63
SQH37750.1|1364912_1365548_+	phage replication protein	NA	NA	NA	NA	NA
SQH37751.1|1365544_1365769_+	Uncharacterised protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
SQH37752.1|1365805_1366225_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	75.4	3.3e-56
SQH37753.1|1366221_1366314_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37754.1|1366313_1366862_+	ning recombination protein	NA	D0UIK8	Aggregatibacter_phage	62.6	1.8e-57
SQH37755.1|1366863_1367232_+	putative phage anti-termination protein Q	NA	Q7Y5V5	Haemophilus_phage	63.4	6.1e-38
SQH37756.1|1367332_1367515_+	YcfA-like protein	NA	NA	NA	NA	NA
SQH37757.1|1367546_1367996_+	Uncharacterised protein family (UPF0150)	NA	A0A0R6PJ17	Moraxella_phage	38.3	1.8e-23
SQH37758.1|1368040_1368223_-	bacteriophage phi-related protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.2e-05
SQH37759.1|1368820_1369690_+	antirepressor protein	NA	D0UIK6	Aggregatibacter_phage	66.9	4.6e-108
SQH37760.1|1369905_1370262_+|holin	Putative bacteriophage holin protein	holin	NA	NA	NA	NA
SQH37761.1|1370230_1370833_+	Putative phage lysozyme	NA	Q7Y5V0	Haemophilus_phage	53.9	5.6e-57
1370675:1370691	attL	GATTTATCTGTTAAAAC	NA	NA	NA	NA
SQH37762.1|1370825_1371149_+	putative bacteriophage protein	NA	Q7Y5U9	Haemophilus_phage	56.5	4.5e-21
SQH37763.1|1371343_1371691_-	transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	4.4e-22
SQH37764.1|1371674_1371926_-	bacteriophage protein/plasmid stabilization system protein	NA	A0A1S5NR91	Burkholderia_phage	50.6	6.4e-15
SQH37765.1|1372002_1372518_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	40.9	5.6e-21
SQH37766.1|1372504_1373848_+|terminase	phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	53.7	3.1e-124
SQH37767.1|1373849_1374554_+	phage-associated protein, HI1409 family	NA	Q7Y5U6	Haemophilus_phage	68.4	1.2e-87
SQH37768.1|1374562_1375180_+	phage-associated protein, HI1409 family	NA	Q7Y5U6	Haemophilus_phage	83.9	4.8e-88
SQH37769.1|1375208_1376642_+	plasmid RP4 TraN-like protein	NA	Q7Y5U5	Haemophilus_phage	77.2	1.7e-88
SQH37770.1|1376920_1377277_+	Uncharacterised protein	NA	A0A1W6JNL0	Staphylococcus_phage	31.7	7.8e-06
SQH37771.1|1377341_1378442_+	Uncharacterized protein conserved in bacteria	NA	Q7Y5U2	Haemophilus_phage	87.0	4.4e-140
SQH37772.1|1378454_1378895_+	Uncharacterised protein	NA	D0UIJ1	Aggregatibacter_phage	71.1	2.3e-47
SQH37773.1|1378904_1379819_+	Uncharacterized protein conserved in bacteria	NA	Q7Y5U0	Haemophilus_phage	89.5	1.7e-150
SQH37774.1|1379828_1380191_+	Uncharacterised protein	NA	Q7Y5T9	Haemophilus_phage	67.3	1.5e-33
SQH37775.1|1380191_1380638_+	Uncharacterised protein	NA	Q7Y5T8	Haemophilus_phage	72.3	6.7e-55
SQH37776.1|1380634_1381006_+	Uncharacterised protein	NA	Q776V7	Haemophilus_phage	70.7	6.8e-45
SQH37777.1|1381073_1381433_+	Uncharacterised protein	NA	Q7Y5T6	Haemophilus_phage	74.6	1.1e-44
SQH37778.1|1381437_1382946_+	phage-like protein	NA	Q7Y5T5	Haemophilus_phage	86.9	4.6e-249
SQH37779.1|1383022_1383181_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37780.1|1383190_1383622_+	Protein of uncharacterised function (DUF3277)	NA	Q7Y5T4	Haemophilus_phage	93.0	2.9e-71
SQH37781.1|1383621_1384032_+	Protein of uncharacterised function (DUF2669)	NA	Q776V6	Haemophilus_phage	70.8	5.9e-50
SQH37782.1|1384182_1385166_+	Uncharacterised protein	NA	Q7Y5T2	Haemophilus_phage	66.4	2.7e-56
SQH37783.1|1385173_1386271_+|tail	Phage-related minor tail protein	tail	Q7Y5T2	Haemophilus_phage	71.9	2.9e-144
SQH37784.1|1386276_1387059_+	Uncharacterised protein	NA	Q7Y5T0	Haemophilus_phage	65.5	1.0e-82
SQH37785.1|1387052_1387373_+	Uncharacterised protein	NA	Q7Y5S9	Haemophilus_phage	82.4	1.1e-46
SQH37786.1|1387514_1387625_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37787.1|1387627_1388512_+	Phage protein D	NA	D0UIH8	Aggregatibacter_phage	89.5	1.9e-141
SQH37788.1|1388508_1389153_+|plate	phage baseplate assembly protein V	plate	Q7Y5S7	Haemophilus_phage	85.0	1.8e-85
SQH37789.1|1389149_1389503_+	Uncharacterised protein	NA	Q7Y5S5	Haemophilus_phage	89.6	2.5e-57
SQH37790.1|1389598_1390741_+	Uncharacterized homolog of phage Mu protein gp47	NA	D0UIH5	Aggregatibacter_phage	86.3	6.7e-184
SQH37791.1|1390740_1391316_+	Protein of uncharacterised function (DUF2612)	NA	D0UIH4	Aggregatibacter_phage	80.1	2.4e-89
SQH37792.1|1391325_1393491_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	53.5	1.7e-143
SQH37793.1|1393490_1394114_+	HP1	NA	D0UIH2	Aggregatibacter_phage	45.3	1.2e-17
SQH37794.1|1394106_1394586_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	55.6	1.8e-45
SQH37795.1|1395035_1395353_+|integrase	integrase	integrase	A0A0M3LRG1	Mannheimia_phage	55.2	1.1e-24
SQH37796.1|1395629_1395800_+|integrase	integrase/recombinase	integrase	A0A0M3LQN1	Mannheimia_phage	63.0	1.0e-11
SQH37797.1|1395809_1396034_+|integrase	integrase	integrase	Q19US1	Mannheimia_phage	66.2	5.4e-21
SQH37798.1|1396093_1396252_-	Uncharacterised protein	NA	A0A0M3LTD8	Mannheimia_phage	81.4	3.4e-14
SQH37799.1|1396306_1396777_-	Probable bacteriophage replication protein A	NA	Q94N00	Haemophilus_virus	39.0	6.6e-21
SQH37800.1|1396788_1397010_+	mu-like prophage protein gp29	NA	B7SDN1	Haemophilus_phage	69.4	1.5e-20
SQH37801.1|1397021_1397738_+	Uncharacterised protein	NA	A0A0M3LSH7	Mannheimia_phage	58.2	8.2e-71
SQH37802.1|1397880_1398297_+|tail	phage virion morphogenesis (tail completion) protein	tail	B7SDN8	Haemophilus_phage	71.5	4.2e-51
SQH37803.1|1398670_1399468_-|holin	phosphorylcholine transferase	holin	A0A1V0SD50	Indivirus	43.9	9.3e-07
SQH37804.1|1399467_1400169_-	protein LicC	NA	NA	NA	NA	NA
SQH37805.1|1400165_1401044_-	protein LicB	NA	NA	NA	NA	NA
1400327:1400343	attR	GTTTTAACAGATAAATC	NA	NA	NA	NA
SQH37806.1|1401043_1402072_-	phospho-2-dehydro-3-heoxyheptonate aldolase	NA	NA	NA	NA	NA
SQH37807.1|1402376_1402505_+	mu com-like protein	NA	NA	NA	NA	NA
SQH37808.1|1402571_1403108_+	Protein of uncharacterised function, DUF462	NA	NA	NA	NA	NA
SQH37809.1|1403306_1403966_+	YbeQ	NA	NA	NA	NA	NA
SQH37810.1|1403965_1404142_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH37811.1|1404153_1404255_+	Putative TPR repeat protein	NA	NA	NA	NA	NA
SQH37812.1|1404357_1404921_+	Putative TPR repeat protein	NA	NA	NA	NA	NA
SQH37813.1|1405196_1406282_+	peptide chain release factor RF-1	NA	W8EDB3	Pseudomonas_phage	42.2	1.3e-08
SQH37814.1|1406334_1406775_+	RDD family	NA	NA	NA	NA	NA
SQH37815.1|1406774_1407653_+	N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2	NA	NA	NA	NA	NA
SQH37816.1|1407652_1408456_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SQH37817.1|1408470_1409325_+	3-deoxy-D-manno-octulosonate 8-phosphate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.3	4.4e-47
SQH37818.1|1409384_1410332_+	putative 2-hydroxyacid dehydrogenase	NA	M1I636	Acanthocystis_turfacea_Chlorella_virus	27.8	1.7e-23
SQH37819.1|1410331_1411513_+	outer membrane-specific lipoprotein transporter subunit	NA	NA	NA	NA	NA
SQH37820.1|1411524_1412817_+	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	30.0	6.9e-20
SQH37821.1|1412825_1413968_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
SQH37822.1|1413977_1414625_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
SQH37823.1|1414612_1415395_+	putative biotin synthesis protein BioC	NA	NA	NA	NA	NA
SQH37824.1|1415404_1416046_+	dethiobiotin synthetase 2	NA	NA	NA	NA	NA
SQH37825.1|1416127_1416811_+	outer membrane-specific lipoprotein transporter subunit	NA	G9BWD6	Planktothrix_phage	40.1	5.6e-37
SQH37826.1|1416810_1418061_+	outer membrane-specific lipoprotein transporter subunit	NA	NA	NA	NA	NA
SQH37827.1|1418279_1419368_+	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	NA	A0A0B6VT43	Edwardsiella_phage	46.0	7.8e-81
SQH37828.1|1419437_1419878_-	protein ImpA	NA	NA	NA	NA	NA
SQH37829.1|1420162_1421407_+	sodium:serine/threonine symporter	NA	NA	NA	NA	NA
SQH37830.1|1421527_1422136_+	NAD(P)H oxidoreductase	NA	NA	NA	NA	NA
SQH37831.1|1422135_1422690_+	component of anaerobic dehydrogenase	NA	NA	NA	NA	NA
SQH37832.1|1422736_1423291_-	oxidoreductase	NA	NA	NA	NA	NA
SQH37833.1|1423387_1425238_+|protease	protease iv (signal peptide peptidase)	protease	NA	NA	NA	NA
SQH37834.1|1425275_1426073_-|holin	licd protein, phosphorylcholine transferase	holin	A0A1V0SD50	Indivirus	35.5	9.3e-07
SQH37835.1|1426072_1426774_-	protein LicC	NA	NA	NA	NA	NA
SQH37836.1|1426770_1427649_-	protein LicB	NA	NA	NA	NA	NA
SQH37837.1|1427648_1428689_-	phospho-2-dehydro-3-heoxyheptonate aldolase	NA	NA	NA	NA	NA
SQH37838.1|1428759_1430772_-	5-methylaminomethyl-2-thiouridine methyltransferase	NA	NA	NA	NA	NA
SQH37839.1|1430920_1432141_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
SQH37840.1|1432207_1432471_-	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	68.8	3.6e-24
SQH37841.1|1432585_1433494_+	ribosomal protein S6 modification protein	NA	NA	NA	NA	NA
SQH37842.1|1433532_1434747_-	glutamate transporter	NA	NA	NA	NA	NA
SQH37843.1|1434788_1437032_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.2	7.4e-86
SQH37844.1|1437098_1438997_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	2.1e-97
SQH37845.1|1439069_1440005_-	lauryl-acyl carrier protein (ACP)-dependent acyltransferase	NA	A0A1W6JP29	Morganella_phage	39.9	1.3e-52
SQH37846.1|1440101_1441532_+	fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	27.9	1.0e-32
SQH37847.1|1441724_1441964_+	5-methylcytosine methyltransferase	NA	A0A2H4PAK4	Aphanizomenon_phage	44.1	1.0e-06
SQH37848.1|1442117_1442351_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQH37849.1|1442350_1442896_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQH37850.1|1443258_1443618_-	hemocin immunity protein	NA	NA	NA	NA	NA
SQH37851.1|1443623_1443896_-|bacteriocin	hemocin bacteriocin a	bacteriocin	NA	NA	NA	NA
SQH37852.1|1443922_1444630_-|bacteriocin	hemocin bacteriocin b	bacteriocin	NA	NA	NA	NA
