The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483435	Neisseria elongata subsp. glycolytica strain NCTC11050 genome assembly, chromosome: 1	2249415	108946	159186	2249415	transposase,integrase,tRNA	Cyanophage(20.0%)	45	118596:118617	163516:163537
SQH48991.1|108946_110149_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH48992.1|110240_111920_+	NAD-dependent DNA ligase C4 zinc finger domain	NA	NA	NA	NA	NA
SQH48993.1|111916_112321_+	S-adenosylmethionine decarboxylase proenzyme precursor	NA	A0A1D7SEZ2	Cyanophage	53.1	1.7e-17
SQH48994.1|112445_113864_+	protein GlnA	NA	NA	NA	NA	NA
SQH48995.1|113966_115166_+	NYN domain	NA	NA	NA	NA	NA
SQH48996.1|115787_116309_+	periplasmic thioredoxin	NA	NA	NA	NA	NA
SQH48997.1|116488_117871_-	outer membrane efflux protein	NA	NA	NA	NA	NA
SQH48998.1|118069_118375_-	Pathogenicity locus	NA	NA	NA	NA	NA
118596:118617	attL	TGTCGGATACAAGTATCCGACC	NA	NA	NA	NA
SQH48999.1|118666_120604_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.2e-39
SQH49000.1|120700_121879_-	ABC transporter periplasmic protein	NA	A0A140XAI1	Dickeya_phage	60.4	2.3e-06
SQH49001.1|122269_122773_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49002.1|123121_123604_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49003.1|124586_124763_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49004.1|124841_125369_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49005.1|125965_126445_+	SMI1 / KNR4 family	NA	NA	NA	NA	NA
SQH49006.1|127627_128092_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49007.1|128568_130368_+	TpsA2 activation/secretion protein TpsB2	NA	NA	NA	NA	NA
SQH49008.1|130615_131308_+	Integrase core domain	NA	NA	NA	NA	NA
SQH49009.1|131465_132914_-	Divergent AAA domain	NA	NA	NA	NA	NA
SQH49010.1|133007_133766_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49011.1|133926_134637_-|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
SQH49012.1|134765_136109_+	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	43.7	3.3e-97
SQH49013.1|136185_136581_-|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
SQH49014.1|136691_136916_+	FMN oxidoreductase CC3083	NA	NA	NA	NA	NA
SQH49015.1|136983_138747_-	glutathione-regulated potassium-efflux system protein	NA	NA	NA	NA	NA
SQH49016.1|138877_139843_-	Alkanal monooxygenase alpha chain	NA	NA	NA	NA	NA
SQH49017.1|140022_140922_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQH49018.1|141159_142167_-|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
SQH49019.1|142177_142375_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49020.1|142725_143574_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49021.1|144072_144483_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49022.1|144484_146524_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH49023.1|146526_148047_-|integrase	integrase	integrase	NA	NA	NA	NA
SQH49024.1|148033_148990_-	site-specific tyrosine recombinase XerC	NA	NA	NA	NA	NA
SQH49025.1|149462_149984_-	single-stranded DNA binding protein	NA	F8TUL2	EBPR_podovirus	60.6	1.1e-40
SQH49026.1|149987_151370_-	Drug resistance translocase family protein	NA	NA	NA	NA	NA
SQH49027.1|151646_152657_+|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH49028.1|152727_153513_+	Protein of uncharacterised function (DUF3298)	NA	NA	NA	NA	NA
SQH49029.1|153597_153981_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
SQH49030.1|154159_154627_-	pilin	NA	NA	NA	NA	NA
SQH49031.1|154704_155091_-	type IV pilus assembly protein	NA	NA	NA	NA	NA
SQH49032.1|155287_156505_-	putative hemagglutinin/hemolysin	NA	NA	NA	NA	NA
SQH49033.1|156840_157500_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH49034.1|157516_158164_-	NTP-binding protein TniB	NA	NA	NA	NA	NA
SQH49035.1|158163_159186_-|integrase	integrase	integrase	NA	NA	NA	NA
163516:163537	attR	GGTCGGATACTTGTATCCGACA	NA	NA	NA	NA
>prophage 2
LS483435	Neisseria elongata subsp. glycolytica strain NCTC11050 genome assembly, chromosome: 1	2249415	1592930	1644359	2249415	portal,terminase,integrase,transposase,tRNA,capsid	Burkholderia_phage(21.43%)	54	1633419:1633435	1654338:1654354
SQH50364.1|1592930_1594034_-|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
SQH50365.1|1594531_1595389_-	Replication gene A protein	NA	A0A0M3ULG0	Salmonella_phage	50.4	2.9e-30
SQH50366.1|1595385_1595985_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50367.1|1596068_1596362_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50368.1|1596351_1596798_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50369.1|1596892_1597177_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50370.1|1597387_1597528_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50371.1|1597720_1598416_+	putative transcriptional regulator	NA	E5FFF8	Burkholderia_phage	33.5	2.0e-26
SQH50372.1|1598481_1599621_+	Uncharacterised protein	NA	Q7Y4B3	Escherichia_virus	40.5	5.7e-58
SQH50373.1|1599630_1600638_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50374.1|1600642_1601584_-	DcmB	NA	Q7Y4B5	Escherichia_virus	67.3	1.2e-122
SQH50375.1|1601667_1602168_-	Head completion/stabilization protein	NA	A0A077K9R2	Ralstonia_phage	40.2	7.8e-12
SQH50376.1|1602275_1602905_-|terminase	phage terminase, endonuclease subunit	terminase	K4NX86	Burkholderia_phage	36.6	3.9e-24
SQH50377.1|1602987_1604037_-|capsid	phage major capsid protein GpN, P2 family	capsid	Q19UT3	Mannheimia_phage	45.0	1.7e-61
SQH50378.1|1604076_1604931_-|capsid	Presumed capsid scaffolding protein GpO	capsid	A0A2H4J928	uncultured_Caudovirales_phage	44.7	4.6e-28
SQH50379.1|1605090_1606890_+	Terminase, ATPase subunit	NA	E5FFI8	Burkholderia_phage	50.2	1.2e-158
SQH50380.1|1606903_1607884_+|capsid,portal	phage capsid portal protein	capsid,portal	A4JWV0	Burkholderia_virus	47.5	4.1e-81
SQH50381.1|1608594_1609980_-	pyridine nucleotide transhydrogenase	NA	NA	NA	NA	NA
SQH50382.1|1610078_1611620_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
SQH50383.1|1611907_1612315_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQH50384.1|1612399_1613692_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.7	1.6e-96
SQH50385.1|1613814_1615227_-	NadC family protein	NA	NA	NA	NA	NA
SQH50386.1|1615406_1615850_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50387.1|1616131_1616626_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50388.1|1616816_1618442_-	putative ABC-transporter, ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.1	2.4e-57
SQH50389.1|1618542_1619034_-	Membrane protein	NA	NA	NA	NA	NA
SQH50390.1|1619173_1620280_-	FtsW	NA	NA	NA	NA	NA
SQH50391.1|1620276_1622331_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
SQH50392.1|1622327_1622831_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQH50393.1|1622837_1623713_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SQH50394.1|1623731_1624775_-	cell division protein	NA	NA	NA	NA	NA
SQH50395.1|1624970_1625261_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQH50396.1|1625289_1625775_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50397.1|1625657_1625939_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50398.1|1625992_1626592_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50399.1|1626715_1627297_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50400.1|1627376_1628825_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQH50401.1|1629111_1631049_+	ATP-dependent DNA helicase pcrA	NA	NA	NA	NA	NA
SQH50402.1|1631180_1631801_+	Predicted membrane protein	NA	NA	NA	NA	NA
SQH50403.1|1631906_1633337_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
1633419:1633435	attL	TTTTCAGACGGCCTTCC	NA	NA	NA	NA
SQH50404.1|1633502_1633922_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50405.1|1634140_1634443_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50406.1|1635214_1635541_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50407.1|1636039_1636318_+	putative Ner-like DNA-binding prophage protein	NA	F6MII4	Haemophilus_phage	45.1	1.0e-13
SQH50408.1|1636426_1636798_+	putative N-6adenine-specific DNA methylase	NA	A0A0R6PHB4	Moraxella_phage	48.2	3.5e-25
SQH50409.1|1636990_1637527_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50410.1|1637596_1637884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50411.1|1637948_1638593_+	integral membrane protein	NA	NA	NA	NA	NA
SQH50412.1|1638661_1639105_-	Molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
SQH50413.1|1639138_1639240_-	Molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
SQH50414.1|1639602_1640169_-	Respiratory nitrate reductase 1 alpha chain	NA	NA	NA	NA	NA
SQH50415.1|1640253_1643115_-	Respiratory nitrate reductase 1 alpha chain	NA	NA	NA	NA	NA
SQH50416.1|1643229_1643577_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH50417.1|1643762_1644359_+|integrase	integrase	integrase	NA	NA	NA	NA
1654338:1654354	attR	TTTTCAGACGGCCTTCC	NA	NA	NA	NA
>prophage 3
LS483435	Neisseria elongata subsp. glycolytica strain NCTC11050 genome assembly, chromosome: 1	2249415	2002823	2036317	2249415	transposase,tRNA	Bacillus_phage(22.22%)	38	NA	NA
SQH50778.1|2002823_2003000_+|transposase	IS1016 transposase	transposase	NA	NA	NA	NA
SQH50779.1|2003049_2003559_+|transposase	IS1016 group transposase	transposase	NA	NA	NA	NA
SQH50780.1|2003576_2004266_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50781.1|2004549_2004729_+|transposase	IS1016 transposase	transposase	NA	NA	NA	NA
SQH50782.1|2004759_2005668_+|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
SQH50783.1|2005730_2006015_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50784.1|2006028_2006319_+	Citrate lyase beta subunit	NA	NA	NA	NA	NA
SQH50785.1|2006370_2007069_+	Site-specific recombinase XerD	NA	A0A0M3LQJ3	Mannheimia_phage	47.8	9.8e-61
SQH50786.1|2007228_2007600_+	ribosome-binding factor A	NA	NA	NA	NA	NA
SQH50787.1|2007601_2008132_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50788.1|2008239_2009154_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQH50789.1|2009704_2010454_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50790.1|2010659_2012183_-	fumarate hydratase	NA	NA	NA	NA	NA
SQH50791.1|2012363_2013026_+	oxidoreductase, NAD(P)H-flavin	NA	NA	NA	NA	NA
SQH50792.1|2013103_2013559_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH50793.1|2013644_2014217_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SQH50794.1|2014224_2014515_-	Protein rnfH	NA	NA	NA	NA	NA
SQH50795.1|2014507_2014939_-	oligoketide cyclase/lipid transport protein	NA	NA	NA	NA	NA
SQH50796.1|2015052_2016099_-	Inner membrane ABC transporter permease protein yejB	NA	NA	NA	NA	NA
SQH50797.1|2016127_2016331_-	Protein of uncharacterised function (DUF2788)	NA	NA	NA	NA	NA
SQH50798.1|2016466_2017636_-	putative O-succinylhomoserine sulfhydrolase	NA	NA	NA	NA	NA
SQH50799.1|2017771_2018449_-	putative lipoprotein releasing factor ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	8.1e-36
SQH50800.1|2018441_2019692_-	lipoprotein releasing system transmembrane protein	NA	NA	NA	NA	NA
SQH50801.1|2019859_2020795_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	78.1	3.9e-113
SQH50802.1|2020972_2021761_-	RNA methyltransferase	NA	NA	NA	NA	NA
SQH50803.1|2022184_2023462_-	putative O-succinylhomoserine sulfhydrolase	NA	A0A0B5JD48	Pandoravirus	28.5	2.5e-14
SQH50804.1|2023654_2026420_-	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	32.3	1.6e-93
SQH50805.1|2027402_2027561_+	Predicted protein tyrosine phosphatase	NA	NA	NA	NA	NA
SQH50806.1|2027653_2028196_-	lipoprotein	NA	A0A1V0DZX6	Clostridioides_phage	38.5	3.8e-20
SQH50807.1|2028279_2029245_-	PhoH-related protein	NA	H6X2N1	Pseudomonas_phage	49.8	3.2e-46
SQH50808.1|2029422_2029920_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SQH50809.1|2030031_2030682_+	Deoxyguanosine kinase	NA	S5M586	Bacillus_phage	25.4	1.7e-11
SQH50810.1|2030688_2031477_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	35.3	3.7e-40
SQH50811.1|2031655_2032477_+	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
SQH50812.1|2032574_2032964_-	Ribonuclease, putative	NA	NA	NA	NA	NA
SQH50813.1|2033400_2034408_+|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
SQH50814.1|2035326_2035635_-	Domain of uncharacterised function (DUF3578)	NA	NA	NA	NA	NA
SQH50815.1|2035870_2036317_+|transposase	transposase, IS30 family	transposase	NA	NA	NA	NA
