The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	18160	55819	2093242	tRNA,integrase,transposase	Streptococcus_phage(27.27%)	35	12443:12456	32197:32210
12443:12456	attL	TAACTTCAGACTTA	NA	NA	NA	NA
SQG97679.1|18160_19327_+|integrase	integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	51.0	7.7e-103
SQG97680.1|19446_20562_+	GTP-dependent nucleic acid-binding protein EngD	NA	NA	NA	NA	NA
SQG97681.1|20632_21202_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SQG97682.1|21202_24712_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
SQG97683.1|24769_25036_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
SQG97684.1|25028_25397_+	cell division protein	NA	NA	NA	NA	NA
SQG97685.1|25401_25524_+	putative extracellular protein	NA	NA	NA	NA	NA
SQG97686.1|25516_26785_+	beta-lactamase	NA	NA	NA	NA	NA
SQG97687.1|26781_28059_+	MesJ/Ycf62 family protein	NA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
SQG97688.1|28062_28605_+	hypoxanthine guanine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	2.7e-10
SQG97689.1|28620_30579_+	cell-division protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
SQG97690.1|30700_31180_+	competence-specific global transcription modulator	NA	NA	NA	NA	NA
SQG97691.1|36672_37002_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
32197:32210	attR	TAAGTCTGAAGTTA	NA	NA	NA	NA
SQG97692.1|37180_37519_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
SQG97693.1|38108_38315_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.2	7.9e-27
SQG97694.1|38631_38868_+	recombination regulator RecX	NA	NA	NA	NA	NA
SQG97695.1|39056_40385_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
SQG97696.1|40585_41053_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
SQG97697.1|41239_41683_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	46.7	3.1e-28
SQG97698.1|41642_42200_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQG97699.1|42312_43575_+	DNA repair protein	NA	NA	NA	NA	NA
SQG97700.1|43647_44145_+	carbonic anhydrase	NA	NA	NA	NA	NA
SQG97701.1|44169_44829_+	repair protein	NA	NA	NA	NA	NA
SQG97702.1|45097_46066_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
SQG97703.1|46001_46481_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	92.5	5.1e-45
SQG97704.1|46608_46842_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
SQG97705.1|47165_47423_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
SQG97706.1|47730_50400_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.3	6.0e-58
SQG97707.1|50484_50922_+	CoA-binding protein	NA	NA	NA	NA	NA
SQG97708.1|51159_52170_-	membrane protein	NA	NA	NA	NA	NA
SQG97709.1|52318_53488_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQG97710.1|53484_54255_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SQG97711.1|54251_55244_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
SQG97712.1|55249_55483_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
SQG97713.1|55525_55819_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 2
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	61804	73260	2093242		Synechococcus_phage(33.33%)	7	NA	NA
SQG97720.1|61804_63958_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.2	4.2e-46
SQG97721.1|63970_65320_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
SQG97722.1|65489_66197_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
SQG97723.1|66398_70124_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	26.0	1.3e-37
SQG97724.1|70216_71659_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
SQG97725.1|71695_72718_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
SQG97726.1|72714_73260_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 3
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	125636	162197	2093242	bacteriocin,tRNA,transposase	Streptococcus_phage(60.0%)	36	NA	NA
SQG97776.1|125636_125924_+|bacteriocin	bacteriocin, putative	bacteriocin	NA	NA	NA	NA
SQG97777.1|125975_128084_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQG97778.1|128080_128722_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
SQG97779.1|128928_129735_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
SQG97780.1|129751_130948_+	argininosuccinate synthase	NA	NA	NA	NA	NA
SQG97781.1|130976_132368_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SQG97782.1|132656_133520_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
SQG97783.1|133985_136205_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	25.3	5.2e-39
SQG97784.1|136197_136665_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97785.1|136661_138014_+	Secreted protein	NA	NA	NA	NA	NA
SQG97786.1|138159_138540_+	Membrane protein	NA	NA	NA	NA	NA
SQG97787.1|140120_140492_+	Membrane protein	NA	NA	NA	NA	NA
SQG97788.1|140499_140712_+	Membrane protein	NA	NA	NA	NA	NA
SQG97789.1|141085_141211_+	Membrane protein	NA	NA	NA	NA	NA
SQG97790.1|141191_141437_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
SQG97791.1|141593_142652_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97792.1|142965_143943_+	Leader peptidase	NA	NA	NA	NA	NA
SQG97793.1|144413_144788_+	Membrane protein	NA	NA	NA	NA	NA
SQG97794.1|144995_145898_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97795.1|145953_146307_+	Membrane protein	NA	NA	NA	NA	NA
SQG97796.1|146303_147032_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97797.1|148391_148670_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	52.7	6.0e-22
SQG97798.1|148955_151091_+	surface protein A	NA	NA	NA	NA	NA
SQG97799.1|151491_152613_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
SQG97800.1|152753_153209_+	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG97801.1|153218_155132_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
SQG97802.1|155483_157163_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
SQG97803.1|157164_157398_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG97804.1|157677_157893_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97805.1|158215_158368_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
SQG97806.1|158370_158556_-	excreted peptide	NA	NA	NA	NA	NA
SQG97807.1|158733_159417_+	molecular chaperone	NA	NA	NA	NA	NA
SQG97808.1|159413_159851_+	acetyltransferase	NA	NA	NA	NA	NA
SQG97809.1|159840_160851_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
SQG97810.1|160890_161277_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.4e-45
SQG97811.1|161267_162197_-|transposase	IS1193, transposase, ISL3 family	transposase	A0A1S5SBP9	Streptococcus_phage	63.6	2.9e-92
>prophage 4
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	288316	412523	2093242	transposase,holin,integrase,tRNA,protease	Streptococcus_phage(33.33%)	115	291265:291281	402058:402074
SQG97946.1|288316_289024_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG97947.1|289148_290093_+	dihydropteroate synthase	NA	NA	NA	NA	NA
SQG97948.1|290094_291417_+	dihydrofolate synthetase	NA	NA	NA	NA	NA
291265:291281	attL	CAAGATTGGCATGATTT	NA	NA	NA	NA
SQG97949.1|291397_291952_+	GTP cyclohydrolase	NA	E7DN69	Pneumococcus_phage	44.9	7.5e-40
SQG97950.1|291994_292807_+	bifunctional folate synthesis protein	NA	NA	NA	NA	NA
SQG97951.1|292851_293169_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA	NA
SQG97952.1|293525_293972_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQG97953.1|293991_294384_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
SQG97954.1|294645_295068_-|integrase	phage integrase family integrase/recombinase	integrase	NA	NA	NA	NA
SQG97955.1|295214_295391_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97956.1|295390_295516_+	filamentation induced by cAMP protein fic	NA	NA	NA	NA	NA
SQG97957.1|295791_298005_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
SQG97958.1|298226_298703_-	gluthatione peroxidase	NA	NA	NA	NA	NA
SQG97959.1|298925_302129_+	hyaluronidase	NA	NA	NA	NA	NA
SQG97960.1|302682_302898_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	39.5	3.8e-08
SQG97961.1|303273_303903_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
SQG97962.1|303912_304914_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
SQG97963.1|304944_305586_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
SQG97964.1|305604_306420_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG97965.1|306691_307126_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
SQG97966.1|307137_308328_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
SQG97967.1|308338_308830_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
SQG97968.1|308844_309624_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
SQG97969.1|309610_310429_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
SQG97970.1|310428_310722_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQG97971.1|310743_312645_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
SQG97972.1|312704_313706_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
SQG97973.1|313815_314151_-	membrane protein	NA	NA	NA	NA	NA
SQG97974.1|314161_314404_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG97975.1|314414_314957_-	membrane protein	NA	NA	NA	NA	NA
SQG97976.1|314972_315167_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
SQG97977.1|315332_316283_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
SQG97978.1|316294_316612_+	cell division protein FtsL	NA	NA	NA	NA	NA
SQG97979.1|316615_318868_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
SQG97980.1|318869_319850_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
SQG97981.1|320457_322563_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.7	2.6e-117
SQG97982.1|322859_323342_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
SQG97983.1|323436_324921_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
SQG97984.1|325073_326681_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQG97985.1|327746_329192_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	59.9	3.1e-133
SQG97986.1|329193_329925_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
SQG97987.1|329933_330626_+	capsular polysaccharide biosynthesis protein Cps14C	NA	A0A1X9I5E1	Streptococcus_phage	55.0	1.6e-60
SQG97988.1|330635_331319_+	capsular polysaccharide biosynthesis protein Cps14D	NA	A0A1X9I5D6	Streptococcus_phage	59.9	2.4e-72
SQG97989.1|331334_332702_+	glucosyl-1-phosphate transferase	NA	NA	NA	NA	NA
SQG97990.1|332705_333155_+	putative glycosyl transferase enhancer	NA	NA	NA	NA	NA
SQG97991.1|333154_333658_+	ss-1,4-galactosyltransferase	NA	NA	NA	NA	NA
SQG97992.1|333647_334820_+	polysaccharide polymerase	NA	NA	NA	NA	NA
SQG97993.1|334816_335836_+	ss-1,3-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SQG97994.1|335850_336807_+	ss-1,4-galactosyltransferase	NA	A0A1V0SAH6	Catovirus	39.3	1.6e-13
SQG97995.1|336894_337743_+	capsular polysaccharide synthesis protein	NA	A0A0E3FM02	Synechococcus_phage	31.1	4.6e-12
SQG97996.1|337735_339199_+	transporter	NA	NA	NA	NA	NA
SQG97997.1|339182_340262_+	glycerol phosphotransferase WchX	NA	NA	NA	NA	NA
SQG97998.1|340627_344944_+	putative surface anchored protein	NA	NA	NA	NA	NA
SQG97999.1|345098_345626_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.0	1.3e-89
SQG98000.1|345622_345910_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	4.3e-23
SQG98001.1|345906_346425_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.4	5.9e-79
SQG98002.1|346663_348646_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
SQG98003.1|348946_354250_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
SQG98004.1|354416_356576_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SQG98005.1|356572_357169_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
SQG98006.1|357534_358488_+|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG98007.1|358465_359008_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
SQG98008.1|359077_359407_+	cell division initiation protein	NA	NA	NA	NA	NA
SQG98009.1|359892_361050_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
SQG98010.1|361062_362457_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
SQG98011.1|362532_363957_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
SQG98012.1|363968_364658_+|holin	choline binding protein J	holin	NA	NA	NA	NA
SQG98013.1|364755_365778_+|holin	choline binding protein C	holin	NA	NA	NA	NA
SQG98014.1|365795_366794_+|holin	choline binding protein J	holin	NA	NA	NA	NA
SQG98015.1|366911_368144_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQG98016.1|368186_368774_-	lanthionine synthetase C-like protein	NA	NA	NA	NA	NA
SQG98017.1|369674_370004_+|holin	choline binding protein C	holin	NA	NA	NA	NA
SQG98018.1|370125_371004_+	mevalonate kinase	NA	NA	NA	NA	NA
SQG98019.1|370985_371939_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG98020.1|371925_372933_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG98021.1|372916_373927_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
SQG98022.1|374003_374702_+	transporter	NA	NA	NA	NA	NA
SQG98023.1|374698_375694_+	histidine kinase	NA	NA	NA	NA	NA
SQG98024.1|375707_376340_+	response regulator	NA	NA	NA	NA	NA
SQG98025.1|377248_377476_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
SQG98026.1|377616_378963_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
SQG98027.1|379265_379871_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
SQG98028.1|380163_380529_+|integrase	integrase	integrase	C9E2L6	Enterococcus_phage	41.0	2.4e-18
SQG98029.1|380722_382006_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
SQG98030.1|382053_384420_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	27.1	4.0e-58
SQG98031.1|384547_385162_-	signal peptidase I	NA	NA	NA	NA	NA
SQG98032.1|385165_386047_-	ribonuclease HIII	NA	NA	NA	NA	NA
SQG98033.1|386133_386436_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG98034.1|386432_386981_+	CvpA family protein	NA	NA	NA	NA	NA
SQG98035.1|387084_389421_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.8e-21
SQG98036.1|389763_391086_+	Na+/alanine symporter	NA	NA	NA	NA	NA
SQG98037.1|391303_391852_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
SQG98038.1|391960_392860_+	exfoliative toxin	NA	NA	NA	NA	NA
SQG98039.1|392885_394160_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.5	4.3e-91
SQG98040.1|394372_394744_-	ManO	NA	NA	NA	NA	NA
SQG98041.1|394746_396111_-	aspartate kinase	NA	NA	NA	NA	NA
SQG98042.1|396435_397221_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SQG98043.1|397315_397750_+	transcription regulator, MarR family	NA	NA	NA	NA	NA
SQG98044.1|397749_398724_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
SQG98045.1|398783_399008_+	acyl carrier protein	NA	NA	NA	NA	NA
SQG98046.1|399126_400101_+	putative enoyl-(acyl-carrier-protein) reductase II	NA	NA	NA	NA	NA
SQG98047.1|400093_401014_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
SQG98048.1|401047_401779_+	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	2.2e-15
SQG98049.1|401800_403036_+	3-oxoacyl-(acyl carrier protein) synthase II	NA	NA	NA	NA	NA
402058:402074	attR	AAATCATGCCAATCTTG	NA	NA	NA	NA
SQG98050.1|403038_403524_+	acetyl-CoA carboxylase	NA	NA	NA	NA	NA
SQG98051.1|403520_403943_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA	NA
SQG98052.1|403954_405322_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
SQG98053.1|405358_406225_+	acetyl-CoA carboxylase beta subunit	NA	NA	NA	NA	NA
SQG98054.1|406221_406989_+	acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	NA	NA	NA	NA	NA
SQG98055.1|406999_407332_+	excreted peptide	NA	NA	NA	NA	NA
SQG98056.1|408099_408522_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
SQG98057.1|408514_408904_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQG98058.1|408925_409486_-	Translation elongation factor P	NA	NA	NA	NA	NA
SQG98059.1|409614_411057_-|tRNA	glutamyl tRNA-Gln amidotransferase chain B	tRNA	NA	NA	NA	NA
SQG98060.1|411056_412523_-|tRNA	glutamyl-tRNA(Gln) amidotransferase, A subunit	tRNA	NA	NA	NA	NA
>prophage 5
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	429591	541448	2093242	transposase,bacteriocin,integrase,tRNA,protease	Bacillus_phage(13.64%)	110	423963:424007	521292:521308
423963:424007	attL	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
SQG98077.1|429591_430533_-|transposase	transposase	transposase	A0A0U3ULR1	Bacillus_phage	31.1	1.5e-24
423963:424007	attL	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
SQG98078.1|430787_431633_+	undecaprenol kinase	NA	NA	NA	NA	NA
SQG98079.1|431779_432841_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQG98080.1|433188_435513_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.8	5.1e-114
SQG98081.1|435880_436198_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98082.1|436194_436443_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98083.1|436435_436720_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98084.1|437331_437502_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
SQG98085.1|437626_437896_+	PTS system lactose-specific transporter subunit IIBC	NA	NA	NA	NA	NA
SQG98086.1|437941_438166_+	PTS system lactose-specific transporter subunit IIBC truncated	NA	NA	NA	NA	NA
SQG98087.1|438290_439730_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG98088.1|439733_441083_-	potassium uptake protein	NA	NA	NA	NA	NA
SQG98089.1|441271_442120_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
SQG98090.1|442134_442683_+	protein YdcD	NA	NA	NA	NA	NA
SQG98091.1|442689_442902_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
SQG98092.1|443003_444686_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	3.4e-19
SQG98093.1|444670_445501_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG98094.1|445693_446197_+	RNA methyltransferase	NA	NA	NA	NA	NA
SQG98095.1|446649_447213_+	riboflavin transporter	NA	NA	NA	NA	NA
SQG98096.1|447202_447853_+	phosphatase	NA	NA	NA	NA	NA
SQG98097.1|447880_448270_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
SQG98098.1|448274_448724_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
SQG98099.1|448851_449439_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
SQG98100.1|449828_451436_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	2.0e-141
SQG98101.1|451994_453626_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
SQG98102.1|453918_458859_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
SQG98103.1|458948_460145_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQG98104.1|460280_460808_+	signal peptide	NA	NA	NA	NA	NA
SQG98105.1|460884_461241_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
SQG98106.1|461277_462624_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
SQG98107.1|462803_462953_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98108.1|463672_464683_+	type I restriction-modification system S protein	NA	NA	NA	NA	NA
SQG98109.1|464739_465537_+|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
SQG98110.1|465607_466153_+	type I restriction enzyme	NA	NA	NA	NA	NA
SQG98111.1|466100_467000_-	type I restriction-modification system, S subunit	NA	A0A1V0SLK8	Klosneuvirus	25.6	5.7e-13
SQG98112.1|467314_467656_-	restriction endonuclease S subunit	NA	NA	NA	NA	NA
SQG98113.1|467655_469119_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
SQG98114.1|469131_471465_-	type I restriction-modification system, R subunit	NA	A0A097BY72	Enterococcus_phage	26.5	4.5e-25
SQG98115.1|472419_473766_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	1.3e-77
SQG98116.1|474008_474290_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98117.1|474453_475488_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
SQG98118.1|475514_476039_+	heat shock protein GrpE	NA	NA	NA	NA	NA
SQG98119.1|476518_478342_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
SQG98120.1|478343_478700_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98121.1|479101_480238_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	3.1e-24
SQG98122.1|480617_480905_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98123.1|480914_481325_-	protein hit	NA	B5LJ12	Mycobacterium_phage	35.6	4.4e-05
SQG98124.1|481392_482124_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
SQG98125.1|482120_483170_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG98126.1|483337_483667_-	BlpT protein, fusion	NA	NA	NA	NA	NA
483323:483367	attR	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
SQG98127.1|483943_484282_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
483323:483367	attR	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
SQG98128.1|484286_485024_+	response regulator	NA	NA	NA	NA	NA
SQG98129.1|485037_486378_+	histidine kinase	NA	NA	NA	NA	NA
SQG98130.1|486419_486575_-	double glycine cleavage site bacteriolysin superfamily	NA	NA	NA	NA	NA
SQG98131.1|486631_487993_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQG98132.1|488003_489629_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.3	1.8e-41
SQG98133.1|489573_490161_-|protease,bacteriocin	bacteriocin transporter C39 protease domain BlpA2	protease,bacteriocin	NA	NA	NA	NA
SQG98134.1|490442_490640_+|bacteriocin	bacteriocin BlpI	bacteriocin	NA	NA	NA	NA
SQG98135.1|491106_491376_+|bacteriocin	bacteriocin BlpJ	bacteriocin	NA	NA	NA	NA
SQG98136.1|491444_491675_+|bacteriocin	bacteriocin-like peptide N BlpN	bacteriocin	NA	NA	NA	NA
SQG98137.1|492093_492258_+	putative immunity protein	NA	NA	NA	NA	NA
SQG98138.1|492254_492659_+	immunity protein BlpL	NA	NA	NA	NA	NA
SQG98139.1|492856_493246_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG98140.1|493196_493547_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG98141.1|493696_493951_+	BlpM	NA	NA	NA	NA	NA
SQG98142.1|493966_494170_+	blpN protein	NA	NA	NA	NA	NA
SQG98143.1|495571_495991_+	putative immunity protein BlpX	NA	NA	NA	NA	NA
SQG98144.1|496005_496695_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
SQG98145.1|496736_496970_+	immunity protein BlpZ	NA	NA	NA	NA	NA
SQG98146.1|497120_497732_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG98147.1|497892_498687_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
SQG98148.1|498683_499319_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG98149.1|499444_499924_+	SP14.3 protein	NA	NA	NA	NA	NA
SQG98150.1|499979_501104_+	transcription elongation factor NusA	NA	NA	NA	NA	NA
SQG98151.1|501125_501419_+	cytosolic protein YlxR	NA	NA	NA	NA	NA
SQG98152.1|501411_501711_+	L7A family ribosomal protein	NA	NA	NA	NA	NA
SQG98153.1|501727_504520_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
SQG98154.1|504770_505121_+	ribosome-binding factor A	NA	NA	NA	NA	NA
SQG98155.1|505399_506179_+	ABC transporter ATPase	NA	NA	NA	NA	NA
SQG98156.1|506180_506363_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98157.1|506777_507011_+	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
SQG98158.1|507010_508345_+	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
SQG98159.1|508354_508609_+	aldose 1-epimerase	NA	NA	NA	NA	NA
SQG98160.1|508704_509100_+	Helicase	NA	NA	NA	NA	NA
SQG98161.1|509949_510510_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG98162.1|510509_511088_+	shikimate kinase	NA	NA	NA	NA	NA
SQG98163.1|511080_513732_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.4	1.6e-151
SQG98164.1|513812_513977_+	type II DNA modification methyltransferase, truncation	NA	NA	NA	NA	NA
SQG98165.1|514027_515407_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQG98166.1|516009_516813_+	Fic protein family	NA	NA	NA	NA	NA
SQG98167.1|516928_517114_-|integrase	integrase core subunit	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	46.7	1.5e-08
SQG98168.1|517110_517416_-|transposase	degenerate transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.1	2.7e-15
SQG98169.1|517477_517750_-|transposase	IS3-Spn1 transposase	transposase	A0A1B1P773	Bacillus_phage	48.1	1.7e-13
SQG98170.1|517975_518245_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
SQG98171.1|518434_521113_+	DNA or RNA helicases of superfamily II	NA	I3UKD0	Ostreococcus_lucimarinus_virus	28.7	6.5e-28
SQG98172.1|521412_522252_+	transcription antiterminator LicT	NA	NA	NA	NA	NA
SQG98173.1|522269_524108_+	PTS system beta-glucoside-specific transporter subunit EIIABC	NA	NA	NA	NA	NA
SQG98174.1|524120_525536_+	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	23.7	5.6e-23
SQG98175.1|526127_527174_+|tRNA	phenylalanyl-tRNA synthetase, alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
SQG98176.1|527173_527683_+	acetyltransferase, GNAT family	NA	NA	NA	NA	NA
SQG98177.1|527759_530162_+|tRNA	phenylalanyl-tRNA synthetase, beta chain	tRNA	NA	NA	NA	NA
SQG98178.1|530229_531231_-	endonuclease/exonuclease/phosphatase family	NA	NA	NA	NA	NA
SQG98179.1|531386_531611_+|transposase	transposase-like protein, IS1239	transposase	NA	NA	NA	NA
SQG98180.1|531956_532154_+	transcriptional regulator	NA	NA	NA	NA	NA
SQG98181.1|532414_534664_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
SQG98182.1|534727_535594_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
SQG98183.1|536280_538494_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SQG98184.1|538509_539127_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
SQG98185.1|539138_540023_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG98186.1|540104_541448_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.8	6.9e-47
>prophage 6
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	550841	671427	2093242	transposase,holin,bacteriocin,tRNA,protease	Streptococcus_phage(23.08%)	114	NA	NA
SQG98196.1|550841_551369_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	5.4e-88
SQG98197.1|551365_551653_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	68.2	4.8e-22
SQG98198.1|551649_552168_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	86.0	1.1e-74
SQG98199.1|552570_553761_-	oxidoreductase	NA	NA	NA	NA	NA
SQG98200.1|553965_554355_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG98201.1|554367_555132_-	glutamine-binding protein	NA	NA	NA	NA	NA
SQG98202.1|555171_555930_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.1	2.8e-37
SQG98203.1|556205_558428_+	single-stranded DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	29.9	2.7e-72
SQG98204.1|558602_560264_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
SQG98205.1|560332_561112_+	esterase	NA	NA	NA	NA	NA
SQG98206.1|561223_562444_+	serine/alanine-adding enzyme MurM	NA	NA	NA	NA	NA
SQG98207.1|562448_563681_+	peptidoglycan branched peptide synthesis protein, femAB family	NA	NA	NA	NA	NA
SQG98208.1|563759_564461_+	proteinase	NA	NA	NA	NA	NA
SQG98209.1|564500_566345_+	excinuclease, subunit C	NA	NA	NA	NA	NA
SQG98210.1|566334_567168_+	Ser/Thr protein phosphatase family protein	NA	NA	NA	NA	NA
SQG98211.1|567349_568150_-	amino acid ABC transporter amino acid-binding protein	NA	NA	NA	NA	NA
SQG98212.1|568320_568926_+	nitroreductase	NA	NA	NA	NA	NA
SQG98213.1|568938_570339_+	peptidase M20 superfamily	NA	NA	NA	NA	NA
SQG98214.1|570392_570971_+	uracil DNA glycosylase	NA	NA	NA	NA	NA
SQG98215.1|571130_571283_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQG98216.1|571588_572914_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
SQG98217.1|573011_574049_+	peptidase, M42 (glutamyl aminopeptidase) family	NA	NA	NA	NA	NA
SQG98218.1|574050_574521_+	HIT family protein	NA	NA	NA	NA	NA
SQG98219.1|574523_575240_+	carboxypeptidase	NA	NA	NA	NA	NA
SQG98220.1|575548_575974_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQG98221.1|576181_576871_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQG98222.1|577516_577843_-	chlorohydrolase	NA	NA	NA	NA	NA
SQG98223.1|577856_578219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98224.1|579263_580256_+	ATP-binding transport protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.6	1.8e-15
SQG98225.1|580257_581076_+	membrane protein	NA	NA	NA	NA	NA
SQG98226.1|581077_581863_+	ABC transporter permeae	NA	NA	NA	NA	NA
SQG98227.1|581898_582180_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG98228.1|583049_589481_+|protease	serine protease	protease	NA	NA	NA	NA
SQG98229.1|590107_590584_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
SQG98230.1|590621_590927_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
SQG98231.1|590974_592450_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
SQG98232.1|592799_599501_+	beta-galactosidase	NA	NA	NA	NA	NA
SQG98233.1|599748_600372_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	40.0	2.3e-05
SQG98234.1|600359_600605_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	41.0	1.2e-10
SQG98235.1|600756_601116_-	integral membrane protein	NA	NA	NA	NA	NA
SQG98236.1|601207_601717_+	radical SAM superfamily protein (pseudogene)	NA	NA	NA	NA	NA
SQG98237.1|601717_602164_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	50.4	2.9e-34
SQG98238.1|602147_602705_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	2.4e-33
SQG98239.1|602697_602952_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98240.1|602963_605018_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
SQG98241.1|605196_606057_+	ribonuclease BN	NA	NA	NA	NA	NA
SQG98242.1|606275_606986_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
SQG98243.1|607005_607572_+	thioredoxin	NA	NA	NA	NA	NA
SQG98244.1|607582_608695_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
SQG98245.1|609052_609790_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG98246.1|609786_611478_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
SQG98247.1|611593_612157_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
SQG98248.1|612178_617830_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
SQG98249.1|617878_618406_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	4.1e-88
SQG98250.1|618402_618690_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	68.2	4.8e-22
SQG98251.1|618686_618944_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.9	1.0e-28
SQG98252.1|619395_619962_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	NA	NA	NA	NA
SQG98253.1|619973_621116_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	A0A0B5J984	Pandoravirus	31.0	3.4e-34
SQG98254.1|621116_621734_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
SQG98255.1|621783_622782_+|holin	choline binding protein	holin	NA	NA	NA	NA
SQG98256.1|622908_623868_+	glucokinase	NA	NA	NA	NA	NA
SQG98257.1|623964_624804_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.0	3.6e-86
SQG98258.1|624851_625022_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQG98259.1|625142_626027_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG98260.1|626019_627258_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG98261.1|627250_627874_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG98262.1|627888_628818_+	hydrolase	NA	NA	NA	NA	NA
SQG98263.1|628838_629594_+	dehydrogenase	NA	NA	NA	NA	NA
SQG98264.1|629647_630616_-	transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
SQG98265.1|630619_630889_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG98266.1|630888_631269_+	rhodanese family protein	NA	NA	NA	NA	NA
SQG98267.1|631357_631585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98268.1|631624_632350_-	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
SQG98269.1|632511_634353_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
SQG98270.1|634372_634627_+	membrane protein	NA	NA	NA	NA	NA
SQG98271.1|634942_635290_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
SQG98272.1|635360_637382_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
SQG98273.1|637383_638025_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.7	8.8e-24
SQG98274.1|638128_639481_+	MurD D-glutamic acid adding enzyme	NA	NA	NA	NA	NA
SQG98275.1|639482_640541_+	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
SQG98276.1|640550_641750_+	cell division septal protein	NA	NA	NA	NA	NA
SQG98277.1|641982_642684_+	orotidine-5-phosphate decarboxylase	NA	NA	NA	NA	NA
SQG98278.1|642717_643350_+	orotate phosphoribosyltransferase	NA	R9S7H3	Prochlorococcus_phage	32.1	2.4e-05
SQG98279.1|643438_644392_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG98280.1|644828_645179_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98281.1|645274_646039_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98282.1|646038_646791_+	lipoprotein	NA	NA	NA	NA	NA
SQG98283.1|646821_647499_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98284.1|647495_648143_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	1.5e-18
SQG98285.1|648229_649096_-	ABC transporter substrate binding lipoprotein-amino acid transport	NA	NA	NA	NA	NA
SQG98286.1|649107_649866_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	4.2e-33
SQG98287.1|649866_650544_-	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SQG98288.1|650503_651184_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG98289.1|651398_651545_+	L-lactate dehydrogenase (FMN-dependent)-like alpha-hydroxy acid dehydrogenase	NA	NA	NA	NA	NA
SQG98290.1|651672_653163_+|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	39.6	7.3e-90
SQG98291.1|653786_654923_+	L-lactate oxidase	NA	NA	NA	NA	NA
SQG98292.1|655479_656148_+	transcriptional regulator, TENA/THI-4 family protein	NA	NA	NA	NA	NA
SQG98293.1|656436_657219_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
SQG98294.1|657220_657850_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
SQG98295.1|658408_658969_+	cobalt ABC transporter permease	NA	NA	NA	NA	NA
SQG98296.1|658969_660355_+	cobalt or other cation ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.1	4.5e-09
SQG98297.1|660356_661007_+	cobalt ABC transporter domain-containing protein	NA	NA	NA	NA	NA
SQG98298.1|661017_661710_+	transcriptional activator TenA, TENA/THI-4 family protein	NA	NA	NA	NA	NA
SQG98299.1|661714_662239_+	ThiW superfamily protein	NA	NA	NA	NA	NA
SQG98300.1|662238_663042_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
SQG98301.1|663034_663667_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
SQG98302.1|663876_664668_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQG98303.1|665033_665429_+	transcriptional repressor	NA	NA	NA	NA	NA
SQG98304.1|665439_665811_+	Cu2+-exporting ATPase	NA	NA	NA	NA	NA
SQG98305.1|665820_668064_+	cation transporter E1-E2 family ATPase	NA	A0A218MNH6	uncultured_virus	37.5	5.1e-95
SQG98306.1|668270_670046_+	putative oxidase	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.5	1.1e-28
SQG98307.1|670156_670504_+	glyoxalase family protein	NA	NA	NA	NA	NA
SQG98308.1|670715_671129_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG98309.1|671160_671427_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	720499	832773	2093242	integrase,transposase,protease,tRNA	Streptococcus_phage(12.5%)	107	811068:811110	829812:829854
SQG98363.1|720499_722497_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	3.1e-83
SQG98364.1|722546_722918_+	chlorohydrolase	NA	NA	NA	NA	NA
SQG98365.1|723007_723328_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
SQG98366.1|723331_724147_+	membrane protein	NA	NA	NA	NA	NA
SQG98367.1|724221_725148_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
SQG98368.1|725247_725484_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQG98369.1|725476_726175_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	30.9	2.8e-07
SQG98370.1|726185_726665_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
SQG98371.1|726672_727401_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG98372.1|727442_728312_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
SQG98373.1|728286_728727_+	acetyltransferase	NA	NA	NA	NA	NA
SQG98374.1|728849_731396_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	5.7e-74
SQG98375.1|731504_732179_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
SQG98376.1|732168_733503_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
SQG98377.1|733536_733824_-	membrane protein	NA	NA	NA	NA	NA
SQG98378.1|733963_734893_+	U32 family peptidase	NA	NA	NA	NA	NA
SQG98379.1|735092_737543_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	46.9	4.3e-196
SQG98380.1|737579_738803_+	RodA	NA	NA	NA	NA	NA
SQG98381.1|738813_739368_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
SQG98382.1|739443_740016_+	phosphatase	NA	NA	NA	NA	NA
SQG98383.1|740030_741977_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.5	2.1e-145
SQG98384.1|742058_743786_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
SQG98385.1|744601_744838_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG98386.1|745098_745398_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
SQG98387.1|745562_745826_-	mutT/nudix family protein	NA	NA	NA	NA	NA
SQG98388.1|746095_746425_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG98389.1|746622_746946_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
SQG98390.1|747152_749411_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
SQG98391.1|749639_749870_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
SQG98392.1|750059_750743_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG98393.1|750742_751477_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
SQG98394.1|751630_752488_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
SQG98395.1|752629_753502_+	carbohydrate kinase	NA	NA	NA	NA	NA
SQG98396.1|753783_754467_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQG98397.1|754480_755692_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG98398.1|755693_756104_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG98399.1|756250_757060_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG98400.1|757766_758516_+	thiol-activated cytolysin	NA	NA	NA	NA	NA
SQG98401.1|758540_759053_+	pneumolysin	NA	NA	NA	NA	NA
SQG98402.1|759706_760417_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG98403.1|760439_760964_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	3.4e-26
SQG98404.1|761016_761253_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
SQG98405.1|761320_762241_-	pantothenate kinase	NA	NA	NA	NA	NA
SQG98406.1|762430_762727_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
SQG98407.1|762723_762822_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98408.1|763050_763632_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
SQG98409.1|763628_764906_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	52.0	2.8e-114
SQG98410.1|764923_765586_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQG98411.1|765572_765962_+	cytidine deaminase	NA	NA	NA	NA	NA
SQG98412.1|766051_767104_+	lipoprotein	NA	NA	NA	NA	NA
SQG98413.1|767247_768783_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
SQG98414.1|768775_769834_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
SQG98415.1|769836_770793_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
SQG98416.1|770876_771089_+|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
SQG98417.1|771224_771392_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
SQG98418.1|771391_771637_+|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	49.3	1.1e-11
SQG98419.1|771651_771993_+|integrase	integrase core domain-containing protein	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	50.4	7.9e-24
SQG98420.1|772035_772677_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
SQG98421.1|772812_774756_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.9	1.2e-124
SQG98422.1|774755_774863_+	N-6 DNA methylase	NA	NA	NA	NA	NA
SQG98423.1|774876_775002_+	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	74.2	4.6e-06
SQG98424.1|775211_777647_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	1.9e-95
SQG98425.1|777778_778801_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG98426.1|778856_779561_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
SQG98427.1|779625_780315_+	permease	NA	NA	NA	NA	NA
SQG98428.1|780311_781235_+	permease	NA	NA	NA	NA	NA
SQG98429.1|781249_781894_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQG98430.1|782061_782292_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQG98431.1|782664_783867_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQG98432.1|784359_785706_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	1.3e-77
SQG98433.1|785846_786179_-|transposase	degenerate transposase (orf2)	transposase	A0A1S5SBP9	Streptococcus_phage	92.8	4.3e-43
SQG98434.1|786175_786958_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.6	2.4e-124
SQG98435.1|787151_787649_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQG98436.1|787648_789304_+	DNA polymerase III subunits gamma and tau	NA	A0A1L2BWV7	Bacteriophage	33.5	6.5e-47
SQG98437.1|789331_789526_+	membrane protein	NA	NA	NA	NA	NA
SQG98438.1|789675_790446_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
SQG98439.1|790473_791736_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
SQG98440.1|791746_792973_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.8	1.9e-104
SQG98441.1|792959_793400_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	1.6e-13
SQG98442.1|793453_794866_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
SQG98443.1|795064_796306_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.5	8.2e-18
SQG98444.1|796408_797518_+	putative permease	NA	NA	NA	NA	NA
SQG98445.1|798942_799683_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
SQG98446.1|799679_800591_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
SQG98447.1|800587_802540_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
SQG98448.1|802625_804929_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	3.8e-85
SQG98449.1|804973_805411_-	membrane protein	NA	NA	NA	NA	NA
SQG98450.1|805488_806691_+	class-V aminotransferase	NA	NA	NA	NA	NA
SQG98451.1|806699_807914_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
SQG98452.1|808049_808874_+	Esterase	NA	NA	NA	NA	NA
SQG98453.1|808895_809549_+	esterase superfamily protein	NA	NA	NA	NA	NA
SQG98454.1|809648_810815_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
811068:811110	attL	ATACTCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCA	NA	NA	NA	NA
SQG98455.1|811322_812816_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
SQG98456.1|812828_813752_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
SQG98457.1|813843_814080_+	toxin-antitoxin system, antitoxin component,AbrB family	NA	NA	NA	NA	NA
SQG98458.1|814076_814490_+	prophage maintenance system killer protein	NA	NA	NA	NA	NA
SQG98459.1|814607_815573_+|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
SQG98460.1|815606_816623_+	restriction modification system DNA specificity subunit	NA	NA	NA	NA	NA
SQG98461.1|816850_820201_+	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	1.4e-11
SQG98462.1|820471_820672_+	chlorohydrolase	NA	NA	NA	NA	NA
SQG98463.1|820786_821257_-	arginine repressor	NA	NA	NA	NA	NA
SQG98464.1|821273_823547_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
SQG98465.1|823892_826994_+	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.8	2.3e-114
SQG98466.1|827076_828084_+	6-phosphofructokinase	NA	NA	NA	NA	NA
SQG98467.1|828142_829648_+	pyruvate kinase	NA	NA	NA	NA	NA
SQG98468.1|831410_832283_+	lipoprotein, putative	NA	NA	NA	NA	NA
829812:829854	attR	TGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
SQG98469.1|832389_832773_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 8
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	843452	891383	2093242	holin,transposase,protease,tRNA	Streptococcus_phage(44.44%)	51	NA	NA
SQG98482.1|843452_844502_-|transposase	IS1239 transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	34.4	1.2e-33
SQG98483.1|845208_846684_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
SQG98484.1|846837_847365_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG98485.1|847620_848481_+	spermidine synthase	NA	NA	NA	NA	NA
SQG98486.1|848477_849737_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
SQG98487.1|849736_850864_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
SQG98488.1|850860_851946_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	2.0e-89
SQG98489.1|851955_852831_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
SQG98490.1|853011_853821_-	Cof family protein	NA	NA	NA	NA	NA
SQG98491.1|854092_854314_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98492.1|854367_855039_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
SQG98493.1|855280_856189_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
SQG98494.1|856185_856647_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
SQG98495.1|856636_857524_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
SQG98496.1|857526_859410_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
SQG98497.1|859510_860620_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	8.4e-115
SQG98498.1|860629_861892_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.8	5.0e-140
SQG98499.1|861895_862693_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
SQG98500.1|862912_863551_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
SQG98501.1|863547_864438_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
SQG98502.1|864477_864795_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
SQG98503.1|864797_865667_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	75.7	2.9e-115
SQG98504.1|865893_866412_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
SQG98505.1|866519_866657_+	phage protein, point mutation	NA	NA	NA	NA	NA
SQG98506.1|866902_867202_+	phage protein	NA	NA	NA	NA	NA
SQG98507.1|867190_867580_-	fusion of IS1381 orf A and B	NA	NA	NA	NA	NA
SQG98508.1|867596_867995_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG98509.1|868488_869823_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
SQG98510.1|869906_870644_+	uridylate kinase	NA	NA	NA	NA	NA
SQG98511.1|870652_871210_+	ribosome-recycling factor	NA	NA	NA	NA	NA
SQG98512.1|871269_872124_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
SQG98513.1|872132_872348_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
SQG98514.1|872433_873402_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
SQG98515.1|873594_874095_+	acetyltransferase	NA	NA	NA	NA	NA
SQG98516.1|874097_874325_+	TfoX N- domain family protein	NA	NA	NA	NA	NA
SQG98517.1|874724_875000_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG98518.1|875410_875836_-	alanine dehydrogenase	NA	NA	NA	NA	NA
SQG98519.1|876012_876582_+	acetyltransferase	NA	NA	NA	NA	NA
SQG98520.1|876649_877300_+	competence protein	NA	NA	NA	NA	NA
SQG98521.1|877283_879524_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	52.7	2.0e-46
SQG98522.1|879922_880510_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	6.1e-16
SQG98523.1|880513_881695_+	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
SQG98524.1|881806_882760_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG98525.1|883809_884010_+	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
SQG98526.1|884061_884421_+	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
SQG98527.1|884478_884859_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQG98528.1|885108_885909_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
SQG98529.1|885919_886858_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
SQG98530.1|886956_889065_+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
SQG98531.1|889125_890781_-	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
SQG98532.1|890885_891383_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	953570	1069709	2093242	transposase,protease,tRNA	Streptococcus_phage(42.86%)	100	NA	NA
SQG98597.1|953570_955574_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	3.3e-77
SQG98598.1|955755_956667_+	MobA/MobL family protein	NA	NA	NA	NA	NA
SQG98599.1|956992_957166_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98600.1|957351_957879_+	Protein of uncharacterised function (DUF3801)	NA	NA	NA	NA	NA
SQG98601.1|958005_958734_+	phage-associated protein	NA	A0A1S5SAV1	Streptococcus_phage	49.2	7.9e-29
SQG98602.1|959417_959579_+	site-specific DNA recombinase	NA	NA	NA	NA	NA
SQG98603.1|959670_961350_+	site-specific DNA recombinase	NA	A0A2H4J3Q1	uncultured_Caudovirales_phage	25.6	2.2e-34
SQG98604.1|961617_962184_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98605.1|962504_962693_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98606.1|962754_963513_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98607.1|963570_964425_+	hydrolase	NA	NA	NA	NA	NA
SQG98608.1|964536_965421_+	sphingosine kinase	NA	NA	NA	NA	NA
SQG98609.1|965583_965784_+	neopullulanase	NA	NA	NA	NA	NA
SQG98610.1|965747_966695_+	neopullulanase	NA	NA	NA	NA	NA
SQG98611.1|966701_967202_+	neopullulanase	NA	NA	NA	NA	NA
SQG98612.1|967476_967755_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98613.1|967977_968931_+|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG98614.1|969615_969966_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98615.1|970024_970699_+	chloramphenicol acetyltransferase	NA	NA	NA	NA	NA
SQG98616.1|970766_972404_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A167RM67	Powai_lake_megavirus	32.0	2.5e-75
SQG98617.1|972504_973146_+	Protein tyrosine phosphatase	NA	NA	NA	NA	NA
SQG98618.1|974294_975281_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	8.8e-15
SQG98619.1|975282_976101_+	ABC-2 type transport system permease protein	NA	NA	NA	NA	NA
SQG98620.1|976102_976888_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG98621.1|977520_977841_-|transposase	degenerate transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	74.4	8.2e-23
SQG98622.1|978324_978540_-|transposase	degenerate transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	82.2	5.2e-13
SQG98623.1|978963_979167_+	Cro/CI family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	39.3	6.4e-05
SQG98624.1|979413_979563_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98625.1|979616_981410_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A2I4R675	Erysipelothrix_phage	51.8	4.0e-151
SQG98626.1|981532_982102_+	peptidase	NA	NA	NA	NA	NA
SQG98627.1|982383_982632_+	phosphotransferase	NA	NA	NA	NA	NA
SQG98628.1|982736_982931_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG98629.1|983193_984423_+	cell division protein FtsW	NA	NA	NA	NA	NA
SQG98630.1|984442_987139_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SQG98631.1|987551_988556_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG98632.1|988624_989491_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
SQG98633.1|989487_990246_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	1.7e-13
SQG98634.1|990335_992096_+	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	28.7	2.2e-45
SQG98635.1|992098_993208_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.5	2.0e-36
SQG98636.1|993221_993551_+	metal-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
SQG98637.1|993665_994709_+	glycosyl transferase CpoA	NA	NA	NA	NA	NA
SQG98638.1|994724_996050_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA	NA
SQG98639.1|996080_996257_+	putative stress-responsive transcriptional regulator	NA	NA	NA	NA	NA
SQG98640.1|996315_996450_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98641.1|996513_997824_+	GTP-binding protein	NA	NA	NA	NA	NA
SQG98642.1|997833_997992_+	putative extracellular protein	NA	NA	NA	NA	NA
SQG98643.1|998043_998571_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	1.1e-88
SQG98644.1|998567_998855_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	75.3	4.6e-25
SQG98645.1|998851_999406_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.9	4.4e-88
SQG98646.1|1000545_1001805_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2	NA	NA	NA	NA	NA
SQG98647.1|1001820_1002372_+	acetyltransferase	NA	NA	NA	NA	NA
SQG98648.1|1002364_1003642_+	DRTGG domain/CBS domain-containing protein	NA	NA	NA	NA	NA
SQG98649.1|1003657_1004518_+	methionyl aminopeptidase	NA	NA	NA	NA	NA
SQG98650.1|1004616_1005288_+|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
SQG98651.1|1005313_1005703_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG98652.1|1005894_1008186_+	ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
SQG98653.1|1008228_1008909_+	DNA repair protein RadC	NA	NA	NA	NA	NA
SQG98654.1|1008905_1009595_-	glutamine amidotransferase, class I	NA	NA	NA	NA	NA
SQG98655.1|1009612_1010254_-	DNA-binding protein	NA	NA	NA	NA	NA
SQG98656.1|1010336_1010552_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98657.1|1010559_1010907_-	cytosolic protein	NA	NA	NA	NA	NA
SQG98658.1|1010911_1012027_-	aminotransferase class-V	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
SQG98659.1|1012036_1012996_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
SQG98660.1|1013108_1013678_-	adenylate cyclase	NA	NA	NA	NA	NA
SQG98661.1|1013805_1014477_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQG98662.1|1014460_1015279_+	putative sugar kinase	NA	NA	NA	NA	NA
SQG98663.1|1015275_1016172_+	23S_rRNA pseudouridine synthase	NA	NA	NA	NA	NA
SQG98664.1|1016215_1017190_+	phosphotransacetylase	NA	NA	NA	NA	NA
SQG98665.1|1017530_1017830_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG98666.1|1018321_1018648_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG98667.1|1018592_1018901_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG98668.1|1019119_1019434_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQG98669.1|1019449_1019794_+	ribosomal protein	NA	NA	NA	NA	NA
SQG98670.1|1019810_1020104_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQG98671.1|1021057_1021975_+	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SQG98672.1|1022067_1022916_-	YpjC	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
SQG98673.1|1023057_1023897_+	DegV family protein	NA	NA	NA	NA	NA
SQG98674.1|1024002_1024278_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
SQG98675.1|1024705_1026607_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.3	6.6e-51
SQG98676.1|1026609_1027473_+	transcriptional regulator MutR	NA	NA	NA	NA	NA
SQG98677.1|1027552_1028731_+	macrolide efflux ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
SQG98678.1|1028823_1030782_+	DNA ligase	NA	A0A1W6DX16	Sphingobium_phage	35.9	6.0e-100
SQG98679.1|1030893_1033173_+	pullulanase	NA	NA	NA	NA	NA
SQG98680.1|1033716_1035141_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG98681.1|1035623_1037552_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
SQG98682.1|1037541_1038684_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
SQG98683.1|1038673_1039813_+	glycogen biosynthesis protein	NA	NA	NA	NA	NA
SQG98684.1|1039809_1041243_+	glycogen synthase	NA	NA	NA	NA	NA
SQG98685.1|1041955_1042759_+	glycerate kinase-family protein	NA	W6LM47	Streptococcus_phage	35.0	1.4e-34
SQG98686.1|1042755_1043202_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQG98687.1|1043365_1044670_+	Enolase	NA	W6LP63	Streptococcus_phage	94.2	8.1e-234
SQG98688.1|1045003_1046350_-|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
SQG98689.1|1046861_1047200_-|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
SQG98690.1|1047358_1047709_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
SQG98691.1|1048234_1051510_+	exonuclease RexB	NA	NA	NA	NA	NA
SQG98692.1|1051506_1055157_+	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.3	8.8e-20
SQG98693.1|1055416_1056697_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98694.1|1056804_1062828_+|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
SQG98695.1|1062871_1068196_+|protease	zinc metalloprotease ZmpD	protease	NA	NA	NA	NA
SQG98696.1|1068362_1069709_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
>prophage 10
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	1076571	1134638	2093242	bacteriocin,transposase,integrase	Streptococcus_phage(13.33%)	59	1073287:1073301	1107502:1107516
1073287:1073301	attL	TTGAAAAAGTAGTGG	NA	NA	NA	NA
SQG98706.1|1076571_1077918_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
SQG98707.1|1078095_1079343_+	protein kinase	NA	NA	NA	NA	NA
SQG98708.1|1079356_1080274_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.7	6.9e-14
SQG98709.1|1080270_1081071_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG98710.1|1081228_1081702_+|transposase	IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	32.9	4.5e-17
SQG98711.1|1081958_1082216_+	putative transcriptional regulator	NA	A0A1L2BY72	Clostridium_phage	48.3	1.3e-07
SQG98712.1|1082792_1084259_+|integrase	integrase	integrase	A0A1S5S9U4	Streptococcus_phage	29.2	8.4e-30
SQG98713.1|1084340_1085192_+	GTP-binding protein	NA	NA	NA	NA	NA
SQG98714.1|1085178_1085958_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.1	2.8e-24
SQG98715.1|1085973_1087524_+	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
SQG98716.1|1088107_1089178_+	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.9	3.1e-05
SQG98717.1|1089250_1090240_-	lipoate protein ligase A	NA	NA	NA	NA	NA
SQG98718.1|1090303_1092007_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
SQG98719.1|1092052_1093096_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SQG98720.1|1093313_1094306_-	putative acetoin dehydrogenase	NA	NA	NA	NA	NA
SQG98721.1|1094321_1095290_-	acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQG98722.1|1095443_1096805_-	mate efflux family protein	NA	NA	NA	NA	NA
SQG98723.1|1096815_1097076_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98724.1|1097089_1098358_-	dihydroorotase	NA	NA	NA	NA	NA
SQG98725.1|1098370_1098835_-	Mutator mutT protein	NA	NA	NA	NA	NA
SQG98726.1|1098844_1099498_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.8	9.5e-34
SQG98727.1|1099633_1100236_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98728.1|1100293_1101007_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQG98729.1|1101464_1101845_-	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
SQG98730.1|1101861_1101987_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98731.1|1102266_1104744_-	pneumococcal histidine triad protein D	NA	NA	NA	NA	NA
SQG98732.1|1104901_1107352_-	pneumococcal histidine triad protein A precursor	NA	NA	NA	NA	NA
SQG98733.1|1107606_1109331_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
1107502:1107516	attR	CCACTACTTTTTCAA	NA	NA	NA	NA
SQG98734.1|1109345_1109609_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQG98735.1|1109959_1110178_+	nrdH-redoxin	NA	A0A0M7REK7	Lactobacillus_phage	45.9	2.0e-12
SQG98736.1|1110258_1112418_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A8E2R1	Enterococcus_phage	62.7	6.1e-263
SQG98737.1|1112605_1113568_+	ribonucleotide-diphosphate reductase, subunit beta	NA	A0A096XT60	Enterococcus_phage	68.7	6.8e-129
SQG98738.1|1113749_1114511_+	lactose phosphotransferase system repressor	NA	NA	NA	NA	NA
SQG98739.1|1114780_1114966_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98740.1|1115008_1116415_-	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
SQG98741.1|1116623_1118315_-	PTS system, lactose-specific IIBC	NA	NA	NA	NA	NA
SQG98742.1|1118314_1118632_-	PTS system lactose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG98743.1|1118667_1119504_-	transcription antiterminator LacT	NA	NA	NA	NA	NA
SQG98744.1|1119737_1120718_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
SQG98745.1|1120719_1121649_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
SQG98746.1|1121659_1122175_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
SQG98747.1|1122205_1122631_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
SQG98748.1|1122787_1123132_-	protein LacX, plasmid	NA	NA	NA	NA	NA
SQG98749.1|1123300_1123765_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG98750.1|1123715_1123922_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
SQG98751.1|1123921_1124104_-	mobile genetic element	NA	NA	NA	NA	NA
SQG98752.1|1124111_1124414_-	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQG98753.1|1124451_1124841_-	phosphotransferase system sugar-specific EII component	NA	NA	NA	NA	NA
SQG98754.1|1125108_1125441_+	chlorohydrolase	NA	NA	NA	NA	NA
SQG98755.1|1125521_1127345_-	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	41.0	4.9e-19
SQG98756.1|1127423_1128152_-	serine/threonine protein phosphatase	NA	A0A1V0EC57	Caulobacter_phage	33.0	1.9e-14
SQG98757.1|1128153_1129821_-	DNA repair protein RecN	NA	NA	NA	NA	NA
SQG98758.1|1129827_1130220_-	transcriptional repressor protein	NA	NA	NA	NA	NA
SQG98759.1|1130251_1131067_-	rRNA methylase	NA	NA	NA	NA	NA
SQG98760.1|1131059_1131935_-	farnesyl diphosphate synthase	NA	NA	NA	NA	NA
SQG98761.1|1131931_1132144_-	exodeoxyribonuclease VII, small subunit	NA	NA	NA	NA	NA
SQG98762.1|1132121_1133462_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	33.8	1.1e-33
SQG98763.1|1133589_1134228_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
SQG98764.1|1134335_1134638_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 11
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	1187046	1222283	2093242	holin,transposase	Bacillus_phage(20.0%)	40	NA	NA
SQG98816.1|1187046_1187736_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
SQG98817.1|1187747_1188626_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
SQG98818.1|1188615_1189485_-|holin	choline kinase	holin	NA	NA	NA	NA
SQG98819.1|1189501_1190524_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
SQG98820.1|1190528_1191236_-	cytidylyltransferase	NA	NA	NA	NA	NA
SQG98821.1|1191571_1193059_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
SQG98822.1|1193068_1193872_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
SQG98823.1|1193873_1194014_+	licD2 protein	NA	NA	NA	NA	NA
SQG98824.1|1194010_1194682_+	licD2 protein	NA	NA	NA	NA	NA
SQG98825.1|1194956_1198133_-	carbamoyl-phosphate synthase, large subunit	NA	NA	NA	NA	NA
SQG98826.1|1198445_1199525_-	carbamoyl-phosphate synthase, small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
SQG98827.1|1199574_1200498_-	aspartate carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
SQG98828.1|1200516_1201038_-	transcriptional attenuation of the pyrimidine operon/uracil phosphoribosyltransferase (bifunctional protein)	NA	NA	NA	NA	NA
SQG98829.1|1201248_1201878_-	endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
SQG98830.1|1201877_1202420_-	putative metal-binding, possibly nucleic acid-binding protein	NA	NA	NA	NA	NA
SQG98831.1|1202589_1202907_+	BlpT protein, fusion	NA	NA	NA	NA	NA
SQG98832.1|1203145_1204705_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
SQG98833.1|1204853_1205753_-	heat shock protein HtpX	NA	NA	NA	NA	NA
SQG98834.1|1205754_1206315_-	Cytoplasmic membrane protein LemA	NA	NA	NA	NA	NA
SQG98835.1|1206408_1207122_+	16S rRNA methyltransferase GidB	NA	NA	NA	NA	NA
SQG98836.1|1207473_1208757_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
SQG98837.1|1208951_1210523_-	signal recognition particle protein	NA	NA	NA	NA	NA
SQG98838.1|1210534_1210867_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG98839.1|1210957_1211335_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG98840.1|1211406_1212711_+	dGTP triphosphohydrolase	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.8	2.3e-26
SQG98841.1|1212723_1213530_+	hydrolase	NA	NA	NA	NA	NA
SQG98842.1|1213697_1214045_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQG98843.1|1214163_1214493_-	CrcB protein	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
SQG98844.1|1214486_1214861_-	CrcB protein	NA	NA	NA	NA	NA
SQG98845.1|1214857_1215124_-	chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
SQG98846.1|1215239_1215683_-	flavodoxin	NA	NA	NA	NA	NA
SQG98847.1|1215786_1216722_+	DHH subfamily 1 protein	NA	NA	NA	NA	NA
SQG98848.1|1216817_1217060_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQG98849.1|1217116_1217335_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA	NA
SQG98850.1|1217331_1217841_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQG98851.1|1217872_1218277_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG98852.1|1218826_1220173_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SQG98853.1|1220668_1220839_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG98854.1|1220851_1221493_-	multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1)(antigen)	NA	W8CYL7	Bacillus_phage	40.1	1.7e-19
SQG98855.1|1221764_1222283_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	33.8	4.6e-15
>prophage 12
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	1278331	1379671	2093242	holin,bacteriocin,transposase,tRNA	Streptococcus_phage(22.86%)	108	NA	NA
SQG98911.1|1278331_1280950_-|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.6	5.3e-59
SQG98912.1|1280971_1281457_-	Protein of uncharacterised function (DUF567)	NA	NA	NA	NA	NA
SQG98913.1|1282231_1283302_-	ABC transporter, spermidine/putrescine-binding protein	NA	NA	NA	NA	NA
SQG98914.1|1283298_1284072_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
SQG98915.1|1284068_1284875_-	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	26.5	2.5e-12
SQG98916.1|1284855_1286013_-	spermidine/putrescine transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	7.6e-34
SQG98917.1|1286172_1287078_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
SQG98918.1|1287189_1287699_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQG98919.1|1287735_1287942_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQG98920.1|1287951_1288623_-	alpha-acetolactate decarboxylase	NA	NA	NA	NA	NA
SQG98921.1|1288824_1290096_+	transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	47.5	2.2e-103
SQG98922.1|1290115_1290931_-	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
SQG98923.1|1291195_1292452_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.9	2.1e-223
SQG98924.1|1292510_1293164_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
SQG98925.1|1293175_1293934_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	3.9e-15
SQG98926.1|1293946_1294750_-	ABC transporter, ATP-binding protein-phosphate transport, (Phosphate-transporting ATPase 2)	NA	W8CYL7	Bacillus_phage	30.7	9.6e-12
SQG98927.1|1294760_1295645_-	phosphate ABC transporter permeae PstA	NA	NA	NA	NA	NA
SQG98928.1|1295634_1296552_-	phosphate transport protein PstC	NA	NA	NA	NA	NA
SQG98929.1|1296551_1297430_-	phosphate-binding protein PstS 1	NA	NA	NA	NA	NA
SQG98930.1|1298003_1299308_-	NOL1/NOP2/sun family protein	NA	NA	NA	NA	NA
SQG98931.1|1299308_1300082_-	inositol monophosphatase	NA	NA	NA	NA	NA
SQG98932.1|1300071_1300350_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG98933.1|1300349_1300751_-	regulatory protein Spx	NA	NA	NA	NA	NA
SQG98934.1|1300960_1301578_-	integral membrane protein	NA	NA	NA	NA	NA
SQG98935.1|1301567_1302341_-	COG0647: sugar phosphatases of the HAD superfamily, N-acetyl-glucosamine catabolism protein	NA	NA	NA	NA	NA
SQG98936.1|1302351_1303089_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
SQG98937.1|1303093_1304224_-	Coproporphyrinogen III oxidase, oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SQG98938.1|1304307_1304697_-	exported hydrophilic protein	NA	NA	NA	NA	NA
SQG98939.1|1304712_1305096_-	methyl-accepting chemotaxis family domain-containing protein	NA	NA	NA	NA	NA
SQG98940.1|1305096_1305885_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SQG98941.1|1305877_1306813_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
SQG98942.1|1306942_1307119_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQG98943.1|1307478_1308432_+|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG98944.1|1308504_1309212_-	6-phosphogluconolactonase/Glucosamine-6- phosphateisomerase/deaminase	NA	NA	NA	NA	NA
SQG98945.1|1309362_1310391_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQG98946.1|1311051_1311441_-|holin	choline binding protein	holin	NA	NA	NA	NA
SQG98947.1|1312175_1312277_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98948.1|1312893_1313445_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG98949.1|1313742_1314567_-	NAD+ synthetase	NA	G3MA24	Bacillus_virus	57.1	5.3e-74
SQG98950.1|1314563_1316024_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.3	1.5e-103
SQG98951.1|1316139_1316628_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98952.1|1316617_1316827_-	transcriptional repressor	NA	A0A1V0E021	Clostridioides_phage	49.1	4.1e-07
SQG98953.1|1317212_1317767_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG98954.1|1318004_1318676_-	multidrug ABC transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	34.3	2.7e-15
SQG98955.1|1319183_1319903_-	peptidase, U32 family	NA	NA	NA	NA	NA
SQG98956.1|1320484_1321771_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.1	1.6e-40
SQG98957.1|1322394_1322577_+	restriction endonuclease R.XbaI	NA	NA	NA	NA	NA
SQG98958.1|1322760_1322937_+	restriction endonuclease R.XbaI	NA	NA	NA	NA	NA
SQG98959.1|1322944_1324135_+	DNA modification methyltransferase M.XbaI	NA	A0A0H3UZ66	Geobacillus_virus	37.4	7.0e-43
SQG98960.1|1324649_1325642_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQG98961.1|1325801_1327556_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.2	4.1e-23
SQG98962.1|1327539_1329261_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.1e-28
SQG98963.1|1329271_1329856_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
SQG98964.1|1329855_1330551_+	cobalt transport protein	NA	NA	NA	NA	NA
SQG98965.1|1330538_1331903_+	cobalt ABC transporter ATPase component, CbiO	NA	G3M9Y6	Bacillus_virus	27.6	4.2e-15
SQG98966.1|1332357_1332516_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG98967.1|1332587_1332944_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG98968.1|1333109_1333823_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG98969.1|1334069_1334363_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
SQG98970.1|1334400_1334586_-	IS66 family Orf1	NA	NA	NA	NA	NA
SQG98971.1|1334889_1336452_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
SQG98972.1|1336593_1337292_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG98973.1|1337334_1338231_-	membrane protein	NA	NA	NA	NA	NA
SQG98974.1|1338239_1339175_-	beta-lactamase	NA	NA	NA	NA	NA
SQG98975.1|1339171_1339897_-	cppA protein	NA	NA	NA	NA	NA
SQG98976.1|1339980_1340616_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	26.9	1.3e-06
SQG98977.1|1340617_1341445_-	hydrolase	NA	NA	NA	NA	NA
SQG98978.1|1341548_1341803_-	CapA domain-containing protein	NA	NA	NA	NA	NA
SQG98979.1|1341803_1342316_-	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	32.4	1.4e-16
SQG98980.1|1343044_1343656_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
SQG98981.1|1343700_1344429_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
SQG98982.1|1344467_1345379_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
SQG98983.1|1345444_1345669_-	membrane associated protein	NA	NA	NA	NA	NA
SQG98984.1|1345746_1346490_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
SQG98985.1|1346489_1347290_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
SQG98986.1|1347447_1347804_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
SQG98987.1|1347797_1348328_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
SQG98988.1|1348327_1348822_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
SQG98989.1|1348956_1349403_+	BS_ykrK family protein	NA	NA	NA	NA	NA
SQG98990.1|1349399_1350047_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
SQG98991.1|1350067_1350649_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
SQG98992.1|1350649_1351525_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
SQG98993.1|1351676_1353056_-	NADH oxidase	NA	NA	NA	NA	NA
SQG98994.1|1353349_1354273_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
SQG98995.1|1354332_1354938_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	4.5e-54
SQG98996.1|1354955_1356200_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
SQG98997.1|1356422_1356680_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG98998.1|1356721_1358758_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
SQG98999.1|1358969_1359887_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
SQG99000.1|1360430_1361192_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99001.1|1361464_1362307_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	39.8	2.2e-51
SQG99002.1|1362420_1363863_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
SQG99003.1|1364046_1364424_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
SQG99004.1|1364656_1365634_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
SQG99005.1|1365630_1366713_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
SQG99006.1|1366776_1367286_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQG99007.1|1367317_1367824_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG99008.1|1368265_1369048_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.5	1.6e-115
SQG99009.1|1369044_1369572_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	7.1e-88
SQG99010.1|1369680_1370877_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
SQG99011.1|1371040_1371994_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG99012.1|1373032_1373902_-	glycerol facilitator-aquaporin	NA	NA	NA	NA	NA
SQG99013.1|1374125_1374647_-	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQG99014.1|1374604_1375711_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
SQG99015.1|1375821_1376076_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99016.1|1376415_1376949_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG99017.1|1377494_1379213_+	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	83.2	3.4e-272
SQG99018.1|1379323_1379671_+|bacteriocin	thioredoxin, bacteriocin transport accessory protein	bacteriocin	NA	NA	NA	NA
>prophage 13
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	1448058	1512924	2093242	transposase,protease,tRNA	Streptococcus_phage(30.77%)	69	NA	NA
SQG99083.1|1448058_1449024_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
SQG99084.1|1449057_1449969_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
SQG99085.1|1449965_1450943_-	transporter	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
SQG99086.1|1450939_1451830_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
SQG99087.1|1451881_1452262_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
SQG99088.1|1452272_1452860_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQG99089.1|1452868_1454101_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
SQG99090.1|1454132_1454303_-	membrane associated protein	NA	NA	NA	NA	NA
SQG99091.1|1454302_1454809_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
SQG99092.1|1454938_1455457_-	DPS family peroxide resistance protein	NA	NA	NA	NA	NA
SQG99093.1|1455953_1457459_-	1,4-beta-N-acetylmuramidase	NA	NA	NA	NA	NA
SQG99094.1|1457496_1458255_-	triosephosphate isomerase	NA	NA	NA	NA	NA
SQG99095.1|1458352_1459030_-	DNA replication protein	NA	A0A1X9I617	Streptococcus_phage	41.3	2.9e-09
SQG99096.1|1459038_1459983_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
SQG99097.1|1460164_1460677_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	9.1e-32
SQG99098.1|1460763_1461522_-	methyltransferase type 11	NA	NA	NA	NA	NA
SQG99099.1|1462022_1463153_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	4.7e-20
SQG99100.1|1463602_1464178_-	amidases related to nicotinamidase	NA	G3MA16	Bacillus_virus	35.9	3.3e-22
SQG99101.1|1464177_1464966_-	GTP-sensing transcriptional pleiotropic repressor	NA	NA	NA	NA	NA
SQG99102.1|1465084_1466038_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
SQG99103.1|1466474_1468049_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.8	2.4e-59
SQG99104.1|1468247_1469474_-	major facilitator; oxalate:formate antiporter	NA	NA	NA	NA	NA
SQG99105.1|1469666_1470983_+	oxidoreductase, pyridine nucleotide-disulfide class I, Mercury (II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	44.1	2.2e-98
SQG99106.1|1471081_1472425_+	UDP-N-acetylmuramyl tripeptide synthetase, Mur ligase	NA	NA	NA	NA	NA
SQG99107.1|1472424_1473207_+	cobyric acid synthase	NA	NA	NA	NA	NA
SQG99108.1|1473332_1474415_+	X-Pro dipeptidase	NA	NA	NA	NA	NA
SQG99109.1|1474738_1475572_-|transposase	IS3-Spn1, transposase	transposase	A0A1B1P773	Bacillus_phage	49.2	4.9e-59
SQG99110.1|1475868_1476081_-|transposase	transposase orfA, ISSmu1	transposase	NA	NA	NA	NA
SQG99111.1|1476307_1476769_-	integral membrane protein	NA	NA	NA	NA	NA
SQG99112.1|1476746_1477520_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQG99113.1|1477509_1478259_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SQG99114.1|1478571_1479723_-	major facilitator superfamily transporter-efflux	NA	NA	NA	NA	NA
SQG99115.1|1479962_1480592_-	membrane protein	NA	NA	NA	NA	NA
SQG99116.1|1480594_1480933_-	phnA protein	NA	NA	NA	NA	NA
SQG99117.1|1481063_1481735_-	cytidylate kinase	NA	NA	NA	NA	NA
SQG99118.1|1481743_1482220_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQG99119.1|1482265_1482478_+	ferredoxin	NA	NA	NA	NA	NA
SQG99120.1|1482528_1483512_-	glycosil transferase	NA	V5USA4	Oenococcus_phage	49.5	1.5e-75
SQG99121.1|1483495_1484515_-	UDP-glucose 4-epimerase	NA	A0A2K9L5H6	Tupanvirus	48.5	4.7e-88
SQG99122.1|1484617_1484899_-	chlorohydrolase	NA	NA	NA	NA	NA
SQG99123.1|1484905_1486009_-	oxidoreductase, DadA family protein	NA	NA	NA	NA	NA
SQG99124.1|1486025_1486823_-	NIF3 (NGG1p interacting factor 3) family protein	NA	NA	NA	NA	NA
SQG99125.1|1486809_1487487_-	Bcl-2 family protein	NA	NA	NA	NA	NA
SQG99126.1|1487588_1489925_-	P-type ATPase-metal cation transport	NA	M1HRW9	Paramecium_bursaria_Chlorella_virus	26.0	1.1e-34
SQG99127.1|1490057_1490807_+	acyltransferase family protein	NA	NA	NA	NA	NA
SQG99128.1|1491098_1491713_-	Cad superfamily protein	NA	NA	NA	NA	NA
SQG99129.1|1492527_1492797_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQG99130.1|1492937_1493567_-	YwnB	NA	NA	NA	NA	NA
SQG99131.1|1493804_1494005_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99132.1|1494435_1494759_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQG99133.1|1494816_1496760_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.9	1.6e-121
SQG99134.1|1496808_1497783_-	histidine kinase	NA	B5LWN0	Feldmannia_species_virus	26.6	1.4e-09
SQG99135.1|1497775_1498453_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG99136.1|1498608_1499682_+	lipase	NA	NA	NA	NA	NA
SQG99137.1|1499772_1500075_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99138.1|1500143_1500581_-	RRF2 family protein	NA	NA	NA	NA	NA
SQG99139.1|1500656_1501499_-	serine/threonine protein phosphatase family protein	NA	NA	NA	NA	NA
SQG99140.1|1501610_1502261_+	iron-dependent transcriptional regulator	NA	NA	NA	NA	NA
SQG99141.1|1502584_1503106_+	Nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQG99142.1|1503236_1503650_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99143.1|1503668_1503854_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99144.1|1504120_1504564_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
SQG99145.1|1504593_1506816_-	GTP pyrophosphokinase, stringent response protein	NA	A0A2I2L310	Orpheovirus	35.8	2.5e-09
SQG99146.1|1507774_1508404_+	metallo-beta-lactamase superfamily protein	NA	A0A1X9I5D3	Streptococcus_phage	67.1	1.6e-83
SQG99147.1|1508588_1509107_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.7	3.5e-79
SQG99148.1|1509103_1509391_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	69.4	1.6e-22
SQG99149.1|1509387_1509915_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	4.1e-88
SQG99150.1|1510018_1511911_-	peptidase M13 superfamily	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.7	2.9e-67
SQG99151.1|1512201_1512924_+	manganese ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.6	4.2e-14
>prophage 14
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	1978859	2050505	2093242	holin,transposase,protease	Klosneuvirus(14.29%)	56	NA	NA
SQG99609.1|1978859_1980725_-|holin	choline binding protein PcpA	holin	NA	NA	NA	NA
SQG99610.1|1981059_1981242_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG99611.1|1981186_1981621_+	mobile genetic element	NA	NA	NA	NA	NA
SQG99612.1|1981646_1982036_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG99613.1|1982107_1982434_-	Plasmid pRiA4b ORF-3-like protein	NA	NA	NA	NA	NA
SQG99614.1|1982831_1984712_-	glycosyl hydrolase family 20 (GH20) protein	NA	NA	NA	NA	NA
SQG99615.1|1984705_1985587_-	ROK family protein	NA	NA	NA	NA	NA
SQG99616.1|1985658_1988304_-	alpha mannosidase	NA	NA	NA	NA	NA
SQG99617.1|1988394_1989675_-	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
SQG99618.1|1989845_1991930_+	sugar hydrolase	NA	NA	NA	NA	NA
SQG99619.1|1991969_1993649_-	FucA	NA	NA	NA	NA	NA
SQG99620.1|1994403_1995633_+	arginine deiminase	NA	NA	NA	NA	NA
SQG99621.1|1995690_1996707_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
SQG99622.1|1996871_1997819_+	carbamate kinase	NA	NA	NA	NA	NA
SQG99623.1|1998029_1999541_+	C4-dicarboxylate anaerobic carrier, arginine transporter	NA	NA	NA	NA	NA
SQG99624.1|1999562_2000894_+	ArcT	NA	NA	NA	NA	NA
SQG99625.1|2001298_2001589_-	surface protein (fragment)	NA	NA	NA	NA	NA
SQG99626.1|2001576_2001828_-	surface protein (fragment)	NA	NA	NA	NA	NA
SQG99627.1|2002181_2003081_-	spfh domain/band 7 family	NA	A0A1V0SL90	Klosneuvirus	32.5	4.1e-35
SQG99628.1|2003210_2004362_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
SQG99629.1|2004507_2006274_-	L-fucose isomerase	NA	NA	NA	NA	NA
SQG99630.1|2006330_2009447_-	exported glycosyl hydrolase	NA	NA	NA	NA	NA
SQG99631.1|2009456_2011751_-	large secreted protein	NA	NA	NA	NA	NA
SQG99632.1|2011809_2012610_-	PTS system mannose/fructose/N -acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
SQG99633.1|2012606_2013380_-	PTS system mannose/fructose/N -acetylgalactosamine-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG99634.1|2013404_2013875_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQG99635.1|2013865_2014309_-	PTS system IIA component	NA	NA	NA	NA	NA
SQG99636.1|2014289_2014730_-	fucose operon FucU protein	NA	NA	NA	NA	NA
SQG99637.1|2014741_2015380_-	L-fuculose phosphate aldolase	NA	NA	NA	NA	NA
SQG99638.1|2015494_2016436_-	carbohydrate kinase FGGY	NA	NA	NA	NA	NA
SQG99639.1|2016446_2016908_-	L-fuculose kinase fucK	NA	NA	NA	NA	NA
SQG99640.1|2017083_2017512_+	regulator of fucose operon	NA	NA	NA	NA	NA
SQG99641.1|2017652_2018999_+|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	1.7e-77
SQG99642.1|2019250_2019565_+	regulator of fucose operon	NA	NA	NA	NA	NA
SQG99643.1|2020693_2022199_-	ABC zinc transporter, metal-binding lipoprotein	NA	NA	NA	NA	NA
SQG99644.1|2022208_2023015_-	zinc ABC transporter permease	NA	NA	NA	NA	NA
SQG99645.1|2023007_2023712_-	ATP-binding protein, Mn	NA	W8CYL7	Bacillus_phage	26.8	5.7e-08
SQG99646.1|2023711_2024152_-	putative transcriptional repressor	NA	NA	NA	NA	NA
SQG99647.1|2024306_2025575_-	dltD protein	NA	NA	NA	NA	NA
SQG99648.1|2025567_2025807_-	D-alanyl carrier protein DCP	NA	NA	NA	NA	NA
SQG99649.1|2025820_2027065_-	transport protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.7	3.2e-22
SQG99650.1|2027061_2028612_-	D-alanine:Dcp ligase Dcl	NA	A0A2K9KZV5	Tupanvirus	28.2	1.8e-38
SQG99651.1|2029077_2030256_-	transporter major facilitator family protein	NA	NA	NA	NA	NA
SQG99652.1|2030715_2031993_-	reverse transcriptase/maturase, group FT II introns	NA	NA	NA	NA	NA
SQG99653.1|2033104_2033485_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG99654.1|2033965_2034670_-	glycerol uptake facilitator protein	NA	M1IAZ4	Acanthocystis_turfacea_Chlorella_virus	33.5	9.3e-27
SQG99655.1|2034739_2036566_-	alpha-glycerophosphate oxidase	NA	NA	NA	NA	NA
SQG99656.1|2036607_2038116_-	glycerol kinase	NA	NA	NA	NA	NA
SQG99657.1|2038274_2039684_-	regulatory protein	NA	NA	NA	NA	NA
SQG99658.1|2039866_2040739_+	heat shock protein 3HSP33 homolog	NA	NA	NA	NA	NA
SQG99659.1|2040725_2041706_+	NifR3 family TIM-barrel protein	NA	NA	NA	NA	NA
SQG99660.1|2041935_2044749_-|holin	choline-binding surface protein A	holin	NA	NA	NA	NA
SQG99661.1|2044827_2045355_-	membrane protein	NA	NA	NA	NA	NA
SQG99662.1|2045449_2046781_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
SQG99663.1|2046777_2047431_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG99664.1|2048072_2050505_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	5.0e-128
>prophage 15
LS483417	Streptococcus pneumoniae strain NCTC11902 genome assembly, chromosome: 1	2093242	2071396	2080150	2093242	protease	Streptococcus_phage(33.33%)	9	NA	NA
SQG99688.1|2071396_2072236_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
SQG99689.1|2072220_2073048_-	ABCtransporter ATP-binding protein cobalt transport	NA	G9BWD6	Planktothrix_phage	32.9	2.1e-22
SQG99690.1|2073044_2073590_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
SQG99691.1|2073600_2074422_-	transcriptional regulation protein	NA	NA	NA	NA	NA
SQG99692.1|2074463_2075747_-|protease	zinc-dependent protease	protease	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	31.0	1.6e-16
SQG99693.1|2075743_2076994_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	2.0e-93
SQG99694.1|2077152_2077521_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
SQG99695.1|2077523_2078621_+	recombination protein recF	NA	NA	NA	NA	NA
SQG99696.1|2078671_2080150_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
