The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	36588	48949	1789295		Synechococcus_phage(28.57%)	8	NA	NA
SQH09705.1|36588_40362_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.9	3.0e-39
SQH09706.1|40522_41977_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQH09707.1|42004_43027_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.1	1.2e-62
SQH09708.1|43194_43749_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	6.8e-25
SQH09709.1|43932_45480_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	4.4e-45
SQH09710.1|45537_46662_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQH09711.1|46914_48180_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQH09712.1|48337_48949_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	4.0e-18
>prophage 2
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	628750	717924	1789295	terminase,holin,transposase,portal,capsid,integrase,tail,protease,tRNA	Streptococcus_phage(57.89%)	110	679753:679770	726062:726079
SQH10242.1|628750_629590_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQH10243.1|629564_630425_+	GDSL family lipase	NA	NA	NA	NA	NA
SQH10244.1|630402_630990_+	membrane protein	NA	NA	NA	NA	NA
SQH10245.1|631088_631364_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
SQH10246.1|631453_632596_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.1	5.3e-173
SQH10247.1|632718_633024_-	phage membrane protein	NA	NA	NA	NA	NA
SQH10248.1|633033_633822_-	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
SQH10249.1|633996_634098_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10250.1|634194_634353_+	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQH10251.1|634382_634982_-	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQH10252.1|635075_635315_+	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
SQH10253.1|635325_635592_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQH10254.1|635526_636333_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQH10255.1|636381_636627_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQH10256.1|636585_636795_-	phage protein	NA	NA	NA	NA	NA
SQH10257.1|636945_637185_-	phage protein	NA	NA	NA	NA	NA
SQH10258.1|637351_637537_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQH10259.1|637614_637926_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQH10260.1|637927_638062_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQH10261.1|638077_638392_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	1.3e-49
SQH10262.1|638539_639022_+	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQH10263.1|639022_639703_+	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQH10264.1|639804_641034_+	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	100.0	3.3e-237
SQH10265.1|641049_641508_+	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQH10266.1|641510_642323_+	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.3e-152
SQH10267.1|642312_643788_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.7	2.9e-248
SQH10268.1|644049_644463_+	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
SQH10269.1|644459_644780_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
SQH10270.1|644962_645121_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	96.2	4.2e-20
SQH10271.1|645117_645306_+	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	97.8	5.0e-20
SQH10272.1|645351_645636_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
SQH10273.1|645632_645902_+	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQH10274.1|645911_646265_+	phage protein	NA	Q938M1	Temperate_phage	58.3	5.3e-31
SQH10275.1|646261_646546_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
SQH10276.1|646547_647180_+	phage protein	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
SQH10277.1|647182_647893_+	phage protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
SQH10278.1|647889_648261_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10279.1|648536_648977_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	99.3	1.9e-78
SQH10280.1|649561_649900_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQH10281.1|650070_650538_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQH10282.1|650552_652307_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQH10283.1|652303_652474_+	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQH10284.1|652466_652691_+	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQH10285.1|652724_653945_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
SQH10286.1|653922_654588_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
SQH10287.1|654613_655816_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
SQH10288.1|655951_656254_+	phage protein	NA	J7KC36	Streptococcus_phage	87.0	6.1e-44
SQH10289.1|656250_656598_+	phage protein	NA	J7KJ42	Streptococcus_phage	85.5	1.5e-49
SQH10290.1|656594_656972_+	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
SQH10291.1|656968_657394_+	phage protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
SQH10292.1|657410_658019_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
SQH10293.1|658071_658398_+	phage protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
SQH10294.1|658427_658595_+	phage protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
SQH10295.1|658607_662531_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
SQH10296.1|662530_663238_+	phage protein	NA	Q938K2	Temperate_phage	71.1	1.7e-92
SQH10297.1|663234_663864_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	97.6	2.0e-113
SQH10298.1|663969_665379_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	91.3	1.3e-245
SQH10299.1|665375_666398_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
SQH10300.1|666410_668297_+	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
SQH10301.1|668308_668737_+	phage protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
SQH10302.1|668739_669378_+	phage protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
SQH10303.1|669387_669663_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQH10304.1|669659_669887_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQH10305.1|669895_670006_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	86.1	1.9e-08
SQH10306.1|670002_671211_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	86.8	8.6e-214
SQH10307.1|671350_671875_+	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQH10308.1|671862_672729_+	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQH10309.1|673033_673813_+	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	100.0	5.4e-145
SQH10310.1|674288_674864_+	phospholipase A2 SlaA	NA	Q938J0	Temperate_phage	100.0	1.7e-111
SQH10311.1|674857_675145_+	phage membrane protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
SQH10312.1|675209_675392_+	paratox	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
SQH10313.1|675921_677784_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.7	1.6e-89
SQH10314.1|678083_679019_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	7.9e-66
SQH10315.1|679257_679953_+	phosphoglyceromutase	NA	NA	NA	NA	NA
679753:679770	attL	AAAATTGCTCCAGCTCTT	NA	NA	NA	NA
SQH10316.1|680061_680583_+	3H domain-containing protein	NA	NA	NA	NA	NA
SQH10317.1|680743_681286_+	membrane protein	NA	NA	NA	NA	NA
SQH10318.1|681409_682189_+	formate transporter	NA	NA	NA	NA	NA
SQH10319.1|682987_683584_+	recombination protein	NA	NA	NA	NA	NA
SQH10320.1|683684_684731_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQH10321.1|684921_686313_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQH10322.1|686392_687088_+	integral membrane family protein	NA	NA	NA	NA	NA
SQH10323.1|687335_688880_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.4e-35
SQH10324.1|689186_690806_+	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.8	5.0e-60
SQH10325.1|690933_692934_+	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	33.8	2.2e-65
SQH10326.1|692957_693236_-	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
SQH10327.1|693225_694080_-	methyltransferase	NA	NA	NA	NA	NA
SQH10328.1|694119_694860_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQH10329.1|695059_695722_+	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQH10330.1|695702_697946_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQH10331.1|698016_699057_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQH10332.1|699153_699759_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQH10333.1|699925_700153_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10334.1|700137_700386_+	lipoprotein	NA	NA	NA	NA	NA
SQH10335.1|700382_700973_+	S11 family peptidase	NA	NA	NA	NA	NA
SQH10336.1|701086_702274_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQH10337.1|702313_703342_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQH10338.1|703543_704248_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQH10339.1|704366_705083_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQH10340.1|705379_706342_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQH10341.1|706354_708160_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQH10342.1|708535_709732_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQH10343.1|709833_710505_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQH10344.1|710567_711623_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQH10345.1|712009_714628_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	6.7e-62
SQH10346.1|714982_715204_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQH10347.1|715200_715962_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQH10348.1|715980_716676_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQH10349.1|716773_716989_-	Transposase	NA	U5P429	Shigella_phage	43.9	1.6e-09
SQH10350.1|717028_717598_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	38.5	9.8e-27
SQH10351.1|717630_717924_-|transposase	transposase	transposase	NA	NA	NA	NA
726062:726079	attR	AAAATTGCTCCAGCTCTT	NA	NA	NA	NA
>prophage 3
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	749230	803322	1789295	transposase,tRNA	Streptococcus_phage(33.33%)	51	NA	NA
SQH10378.1|749230_750586_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	8.0e-253
SQH10379.1|750624_750717_+	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQH10380.1|750891_751404_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	9.6e-90
SQH10381.1|751488_751890_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQH10382.1|751994_753479_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQH10383.1|753852_755073_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQH10384.1|755192_755558_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQH10385.1|755672_756404_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQH10386.1|756452_757259_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.0	1.5e-65
SQH10387.1|757279_757795_-|transposase	transposase	transposase	NA	NA	NA	NA
SQH10388.1|757918_758026_-	exfoliative toxin	NA	NA	NA	NA	NA
SQH10389.1|758030_758438_-|transposase	transposase	transposase	NA	NA	NA	NA
SQH10390.1|758438_759164_-|transposase	transposase	transposase	NA	NA	NA	NA
SQH10391.1|759362_759491_+	membrane protein	NA	NA	NA	NA	NA
SQH10392.1|759547_760861_+	GTPase ObgE	NA	NA	NA	NA	NA
SQH10393.1|760929_761088_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQH10394.1|761092_761788_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQH10395.1|762012_763413_+	beta-glucosidase	NA	NA	NA	NA	NA
SQH10396.1|763421_764516_+	outer surface protein	NA	NA	NA	NA	NA
SQH10397.1|764621_766616_+	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQH10398.1|766638_766950_+	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQH10399.1|766952_767288_+	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQH10400.1|767284_767734_+	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQH10401.1|767911_769291_+	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQH10402.1|769586_770327_-	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.2e-35
SQH10403.1|770326_772501_-	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQH10404.1|772693_774685_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQH10405.1|774948_775092_+	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQH10406.1|775103_776642_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	8.5e-41
SQH10407.1|776638_777895_+	Protein dltB	NA	NA	NA	NA	NA
SQH10408.1|777912_778152_+	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQH10409.1|778144_779395_+	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQH10410.1|779425_780409_+	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQH10411.1|780987_781629_-|transposase	transposase for insertion-like sequence element IS1161	transposase	NA	NA	NA	NA
SQH10412.1|782091_782928_-	maltose transport system permease	NA	NA	NA	NA	NA
SQH10413.1|782927_784289_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQH10414.1|784562_785810_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQH10415.1|786054_787074_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.5	1.6e-16
SQH10416.1|787188_788682_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQH10417.1|788716_790981_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQH10418.1|791237_791858_-	phage protein	NA	NA	NA	NA	NA
SQH10419.1|792598_793213_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQH10420.1|793343_794129_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQH10421.1|794138_794837_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQH10422.1|794836_795208_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQH10423.1|795392_798503_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
SQH10424.1|798582_799596_+	6-phosphofructokinase	NA	NA	NA	NA	NA
SQH10425.1|799658_801161_+	pyruvate kinase	NA	NA	NA	NA	NA
SQH10426.1|801290_801848_+	Signal peptidase I	NA	NA	NA	NA	NA
SQH10427.1|801860_802667_-	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	91.2	7.4e-129
SQH10428.1|802644_803322_-|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	87.9	5.3e-112
>prophage 4
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1138559	1149162	1789295		Streptococcus_phage(57.14%)	9	NA	NA
SQH10746.1|1138559_1139702_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
SQH10747.1|1139936_1140377_+	membrane protein	NA	NA	NA	NA	NA
SQH10748.1|1140406_1141675_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQH10749.1|1141762_1143115_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.0e-29
SQH10750.1|1143335_1143677_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQH10751.1|1143737_1144904_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	5.8e-34
SQH10752.1|1144997_1145684_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQH10753.1|1145680_1146844_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQH10754.1|1146951_1149162_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	8.5e-268
>prophage 5
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1184571	1224914	1789295	protease,transposase,bacteriocin,tRNA	Tupanvirus(20.0%)	31	NA	NA
SQH10787.1|1184571_1186977_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQH10788.1|1187186_1188230_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
SQH10789.1|1188512_1188812_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQH10790.1|1188798_1189050_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQH10791.1|1189085_1189274_-	epuA protein	NA	NA	NA	NA	NA
SQH10792.1|1189277_1190549_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQH10793.1|1190613_1190871_-	membrane protein	NA	NA	NA	NA	NA
SQH10794.1|1191136_1191553_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQH10795.1|1191565_1192972_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQH10796.1|1193133_1194009_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQH10797.1|1194024_1195533_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQH10798.1|1195548_1196085_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQH10799.1|1196084_1196579_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQH10800.1|1196596_1197313_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQH10801.1|1197347_1197545_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQH10802.1|1197936_1198959_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQH10803.1|1198972_1200931_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.8	2.2e-102
SQH10804.1|1201902_1204635_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQH10805.1|1205205_1206324_-	ABC transporter	NA	NA	NA	NA	NA
SQH10806.1|1206320_1207448_-	ABC transporter	NA	NA	NA	NA	NA
SQH10807.1|1207456_1208380_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQH10808.1|1208402_1209086_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQH10809.1|1209082_1209754_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQH10810.1|1209728_1211087_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQH10811.1|1211106_1212165_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQH10812.1|1212161_1213112_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQH10813.1|1213333_1213495_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQH10814.1|1214358_1220634_-	putative extracellular matrix binding protein Epf	NA	NA	NA	NA	NA
SQH10815.1|1221104_1222646_+	MgaA-like transcriptional regulator	NA	NA	NA	NA	NA
SQH10816.1|1223252_1223942_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	79.8	1.4e-96
SQH10817.1|1224188_1224914_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1324329	1381797	1789295	terminase,transposase,bacteriocin,tRNA	Bacillus_phage(20.0%)	58	NA	NA
SQH10911.1|1324329_1324617_-|terminase	Phage terminase large subunit	terminase	M1PSF2	Streptococcus_phage	90.5	4.4e-44
SQH10912.1|1324695_1325415_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10913.1|1325414_1325645_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10914.1|1325635_1327294_+	ATPase	NA	NA	NA	NA	NA
SQH10915.1|1327283_1327493_+	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	61.5	1.3e-16
SQH10916.1|1327594_1328803_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQH10917.1|1328887_1330045_-	UDP-glucose 6-dehydrogenase	NA	M1GX70	Paramecium_bursaria_Chlorella_virus	41.6	8.5e-78
SQH10918.1|1330736_1331726_-	glycosyl transferase 2 family protein	NA	NA	NA	NA	NA
SQH10919.1|1331780_1332749_-	serine kinase	NA	NA	NA	NA	NA
SQH10920.1|1332732_1333932_-	S-adenosylmethionine synthetase family protein	NA	NA	NA	NA	NA
SQH10921.1|1333941_1334928_-	dehydrogenase	NA	NA	NA	NA	NA
SQH10922.1|1334920_1335655_-	L-glutamate ligase	NA	NA	NA	NA	NA
SQH10923.1|1335656_1336493_-	xylose isomerase-like TIM barrel family protein	NA	NA	NA	NA	NA
SQH10924.1|1336489_1337362_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
SQH10925.1|1337614_1338487_+	transcriptional regulator	NA	NA	NA	NA	NA
SQH10926.1|1338739_1342279_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
SQH10927.1|1342279_1342972_-	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	34.7	6.5e-25
SQH10928.1|1343414_1344224_-	metallo-beta-lactamase superfamily protein	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	37.4	4.8e-35
SQH10929.1|1344227_1345580_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	35.0	4.7e-35
SQH10930.1|1345572_1346283_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	39.0	3.7e-39
SQH10931.1|1346444_1347440_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQH10932.1|1347534_1348782_-	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
SQH10933.1|1348738_1349887_-	Acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
SQH10934.1|1350579_1351422_-	ABC transporter permease	NA	NA	NA	NA	NA
SQH10935.1|1351423_1352242_-	Daunorubicin resistance transmembrane protein	NA	NA	NA	NA	NA
SQH10936.1|1352243_1353236_-	antibiotic transport system ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.1	8.2e-13
SQH10937.1|1353376_1355320_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQH10938.1|1355741_1357076_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQH10939.1|1357077_1358076_-	glycosyltransferase	NA	NA	NA	NA	NA
SQH10940.1|1358206_1359208_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQH10941.1|1359381_1360467_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQH10942.1|1360515_1361181_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQH10943.1|1361191_1361569_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQH10944.1|1361713_1362640_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
SQH10945.1|1362850_1363534_+	membrane protein	NA	NA	NA	NA	NA
SQH10946.1|1363533_1364460_+	membrane protein	NA	NA	NA	NA	NA
SQH10947.1|1364509_1365157_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQH10948.1|1365272_1365992_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQH10949.1|1365997_1366465_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQH10950.1|1366467_1368798_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	1.1e-89
SQH10951.1|1368894_1369131_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQH10952.1|1369319_1370360_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQH10953.1|1370634_1372137_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.3	1.5e-74
SQH10954.1|1372326_1372920_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQH10955.1|1372916_1373744_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQH10956.1|1373915_1374782_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH10957.1|1375852_1376122_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10958.1|1376469_1376859_-	histidine kinase	NA	NA	NA	NA	NA
SQH10959.1|1376960_1377182_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10960.1|1377277_1378027_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10961.1|1378280_1378679_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10962.1|1378913_1379153_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH10963.1|1379691_1379892_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQH10964.1|1379904_1380132_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQH10965.1|1380448_1380871_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH10966.1|1380867_1381017_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQH10967.1|1381354_1381537_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQH10968.1|1381551_1381797_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
>prophage 7
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1420978	1430407	1789295	transposase,tRNA	Streptococcus_phage(33.33%)	8	NA	NA
SQH11014.1|1420978_1421407_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	87.2	7.3e-67
SQH11015.1|1421384_1422212_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	90.8	7.6e-129
SQH11016.1|1422327_1422858_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQH11017.1|1423305_1424058_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQH11018.1|1424262_1426443_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.3	3.3e-171
SQH11019.1|1426409_1426898_-	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQH11020.1|1426901_1427915_-	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	2.5e-97
SQH11021.1|1428409_1430407_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.2	1.3e-86
>prophage 8
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1438748	1444784	1789295		Streptococcus_phage(100.0%)	9	NA	NA
SQH11025.1|1438748_1439576_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
SQH11026.1|1439649_1440006_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQH11027.1|1440306_1440936_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQH11028.1|1440982_1441375_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQH11029.1|1441401_1442265_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.0	5.5e-114
SQH11030.1|1442269_1442593_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQH11031.1|1442997_1443237_-	Tpl protein	NA	NA	NA	NA	NA
SQH11032.1|1443255_1444131_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
SQH11033.1|1444148_1444784_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 9
LS483421	Streptococcus pyogenes strain NCTC10877 genome assembly, chromosome: 1	1789295	1714294	1727359	1789295		Streptococcus_phage(72.73%)	19	NA	NA
SQH11270.1|1714294_1715086_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQH11271.1|1715177_1715411_+	transcriptional regulator	NA	NA	NA	NA	NA
SQH11272.1|1715465_1715873_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQH11273.1|1715886_1716504_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	6.3e-11
SQH11274.1|1716737_1717070_+	phage protein	NA	NA	NA	NA	NA
SQH11275.1|1717066_1717261_+	phage protein	NA	NA	NA	NA	NA
SQH11276.1|1717272_1717635_+	phage protein	NA	NA	NA	NA	NA
SQH11277.1|1717631_1717961_+	phage protein	NA	NA	NA	NA	NA
SQH11278.1|1717963_1718236_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	61.2	1.6e-19
SQH11279.1|1718236_1719094_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	75.2	2.4e-125
SQH11280.1|1719062_1720751_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQH11281.1|1721037_1721211_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQH11282.1|1721216_1721390_+	phage protein	NA	NA	NA	NA	NA
SQH11283.1|1721391_1721901_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQH11284.1|1721974_1722463_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	2.0e-44
SQH11285.1|1722868_1723231_+	phage protein	NA	NA	NA	NA	NA
SQH11286.1|1723205_1723589_+	phage protein	NA	Q938L8	Temperate_phage	40.2	6.4e-14
SQH11287.1|1723789_1724407_+	phage protein	NA	NA	NA	NA	NA
SQH11288.1|1724803_1727359_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	2.3e-43
