The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	38856	51289	1913208		Synechococcus_phage(28.57%)	8	NA	NA
SQG94135.1|38856_42630_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	6.1e-40
SQG94136.1|42863_44318_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	8.3e-54
SQG94137.1|44345_45368_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQG94138.1|45535_46090_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQG94139.1|46273_47821_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQG94140.1|47877_49002_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQG94141.1|49254_50520_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQG94142.1|50677_51289_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	2.4e-18
>prophage 2
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	623971	674307	1913208	terminase,integrase,portal,tail	Streptococcus_phage(65.45%)	70	622102:622117	660974:660989
622102:622117	attL	AAGCTGAGATTAAAGC	NA	NA	NA	NA
SQG94667.1|623971_624811_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQG94668.1|624785_625646_+	GDSL family lipase	NA	NA	NA	NA	NA
SQG94669.1|625623_626211_+	membrane protein	NA	NA	NA	NA	NA
SQG94670.1|626309_626585_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
SQG94671.1|626674_627817_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQG94672.1|627953_628634_-	Uncharacterised protein	NA	A0A097PAS7	Streptococcus_pyogenes_phage	87.7	1.2e-74
SQG94673.1|628668_629427_-	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	65.9	3.1e-84
SQG94674.1|629618_629720_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94675.1|629816_629975_+	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	98.1	1.1e-23
SQG94676.1|630005_630605_-	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	99.5	9.1e-108
SQG94677.1|630659_630806_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94678.1|630802_631285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94679.1|631358_631565_+	phage protein	NA	A0A1X9I5S3	Streptococcus_phage	64.7	1.1e-17
SQG94680.1|631606_631852_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQG94681.1|631810_632020_-	phage protein	NA	NA	NA	NA	NA
SQG94682.1|632169_632409_-	phage protein	NA	NA	NA	NA	NA
SQG94683.1|632575_632761_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQG94684.1|632839_633151_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQG94685.1|633152_633323_+	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQG94686.1|633315_633519_+	phage protein	NA	NA	NA	NA	NA
SQG94687.1|633515_633902_+	phage protein	NA	A7J274	Streptococcus_phage	87.4	6.8e-56
SQG94688.1|633898_634051_+	phage protein	NA	A7J275	Streptococcus_phage	98.0	9.9e-19
SQG94689.1|634047_634251_+	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
SQG94690.1|634338_634638_+	phage protein	NA	A7J277	Streptococcus_phage	98.0	5.6e-42
SQG94691.1|634637_635795_+	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQG94692.1|635809_636367_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQG94693.1|636409_638332_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQG94694.1|638336_640721_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.6	8.2e-277
SQG94695.1|641106_641382_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQG94696.1|641378_642701_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.0	1.4e-249
SQG94697.1|642701_642872_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQG94698.1|642864_643137_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQG94699.1|643139_643286_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94700.1|643269_643686_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQG94701.1|643775_644228_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	95.7	1.7e-66
SQG94702.1|644205_645513_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.0	2.9e-183
SQG94703.1|645524_647015_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.0	1.3e-142
SQG94704.1|646995_647910_+	Phage Mu protein F like protein	NA	A1EAE3	Streptococcus_phage	50.0	1.3e-73
SQG94705.1|647925_648192_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	77.3	4.1e-28
SQG94706.1|648335_648869_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQG94707.1|648878_649259_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	36.3	6.4e-06
SQG94708.1|649261_650311_+	phage protein	NA	A0A286QR01	Streptococcus_phage	57.7	1.8e-106
SQG94709.1|650322_650589_+	phage protein	NA	NA	NA	NA	NA
SQG94710.1|650600_650954_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	52.1	3.9e-26
SQG94711.1|650950_651235_+	phage protein	NA	A0A1P8BKV3	Lactococcus_phage	36.6	5.1e-08
SQG94712.1|651246_651603_+	phage protein, HK97 gp10 family	NA	A1EAF2	Streptococcus_phage	44.0	4.7e-19
SQG94713.1|651599_651998_+	phage protein	NA	A1EAF3	Streptococcus_phage	44.5	3.8e-25
SQG94714.1|651985_652504_+|tail	major tail protein	tail	A1EAF4	Streptococcus_phage	51.7	2.2e-41
SQG94715.1|652557_652926_+	Phage protein	NA	NA	NA	NA	NA
SQG94716.1|652946_653264_+	Uncharacterised protein	NA	A1EAF6	Streptococcus_phage	44.4	6.9e-14
SQG94717.1|653263_656011_+	phage protein	NA	J7KDT4	Streptococcus_phage	36.4	1.8e-54
SQG94718.1|656010_656781_+|tail	phage tail protein	tail	A1EAB1	Streptococcus_phage	45.0	1.2e-56
SQG94719.1|656777_658889_+	phage protein	NA	A3F656	Streptococcus_phage	43.1	3.8e-132
SQG94720.1|658885_660100_+	phage protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
SQG94721.1|660101_660416_+	phage protein	NA	NA	NA	NA	NA
SQG94722.1|660426_662316_+	gp58-like family protein	NA	Q938J9	Temperate_phage	75.7	6.7e-189
660974:660989	attR	AAGCTGAGATTAAAGC	NA	NA	NA	NA
SQG94723.1|662327_662756_+	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQG94724.1|662758_663391_+	phage protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
SQG94725.1|663402_663675_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQG94726.1|663671_663899_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQG94727.1|663907_664018_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQG94728.1|664014_665223_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	87.5	2.9e-214
SQG94729.1|665332_666313_-	Sdn	NA	A7J2B8	Streptococcus_phage	99.7	1.3e-167
SQG94730.1|666551_666731_+	Paratox	NA	A3F673	Streptococcus_phage	77.6	3.4e-18
SQG94731.1|666676_666793_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94732.1|667565_668135_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQG94733.1|668135_670088_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.3	8.9e-144
SQG94734.1|670455_672180_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQG94735.1|672311_672770_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQG94736.1|672999_674307_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
>prophage 3
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	739297	796544	1913208	transposase,tRNA,protease,head	Streptococcus_phage(23.81%)	56	NA	NA
SQG94795.1|739297_741508_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
SQG94796.1|741615_742779_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	4.5e-143
SQG94797.1|742775_743462_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQG94798.1|743555_744722_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQG94799.1|744782_745124_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQG94800.1|745344_746697_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	9.2e-31
SQG94801.1|746784_748053_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQG94802.1|748082_748523_-	membrane protein	NA	NA	NA	NA	NA
SQG94803.1|748757_749900_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.5	6.3e-25
SQG94804.1|749911_751126_+	thiamine biosynthesis protein thiI	NA	NA	NA	NA	NA
SQG94805.1|751262_752456_+	metallophosphatase	NA	A0A0N9SJ77	Staphylococcus_phage	30.7	1.7e-33
SQG94806.1|752474_753422_-|transposase	transposase	transposase	H7BW61	unidentified_phage	34.6	7.6e-32
SQG94807.1|753859_754612_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94808.1|754622_755318_-	multidrug ABC transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	36.3	1.8e-30
SQG94809.1|755330_755519_-	transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	40.0	7.7e-05
SQG94810.1|755523_755871_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94811.1|755975_756509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94812.1|756821_756959_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94813.1|756908_757406_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG94814.1|757680_757995_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQG94815.1|758006_758333_+	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
SQG94816.1|758360_758654_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQG94817.1|759001_759916_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQG94818.1|759912_760371_+	signal peptidase II	NA	NA	NA	NA	NA
SQG94819.1|760360_761251_+	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	3.6e-07
SQG94820.1|761646_762168_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQG94821.1|762183_763443_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.2	1.2e-61
SQG94822.1|763452_764439_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.2e-25
SQG94823.1|764472_765555_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	8.0e-62
SQG94824.1|765800_768977_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SQG94825.1|769182_770454_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SQG94826.1|770453_771164_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.0	4.5e-37
SQG94827.1|771175_772396_+	permease family protein	NA	NA	NA	NA	NA
SQG94828.1|772649_774383_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
SQG94829.1|774509_774782_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQG94830.1|774791_775031_+	RNA binding protein	NA	NA	NA	NA	NA
SQG94831.1|775950_778977_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQG94832.1|778996_779398_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
SQG94833.1|779577_780453_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQG94834.1|780588_781110_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SQG94835.1|781324_781843_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SQG94836.1|781832_782564_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG94837.1|782563_783556_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQG94838.1|783733_784792_+	regulatory protein	NA	NA	NA	NA	NA
SQG94839.1|784804_785728_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQG94840.1|786028_786697_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.2e-17
SQG94841.1|786693_787605_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQG94842.1|787601_789548_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQG94843.1|789646_790240_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQG94844.1|790391_791099_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQG94845.1|791254_791374_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQG94846.1|792055_793075_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG94847.1|793578_793755_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQG94848.1|793982_794363_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG94849.1|794362_795211_+	degV family protein	NA	NA	NA	NA	NA
SQG94850.1|795335_796544_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
>prophage 4
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	846544	909974	1913208	portal,terminase,holin,integrase,tRNA,tail	Streptococcus_phage(68.33%)	77	848885:848902	916322:916339
SQG94896.1|846544_847444_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG94897.1|847516_848755_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG94898.1|848747_849383_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
848885:848902	attL	TGCCTACTTTGCTGAAAT	NA	NA	NA	NA
SQG94899.1|849397_850327_+	ribonuclease Z	NA	NA	NA	NA	NA
SQG94900.1|850326_851091_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQG94901.1|851087_853298_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.6	8.7e-71
SQG94902.1|853447_853966_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
SQG94903.1|854046_854730_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.2e-09
SQG94904.1|854726_855383_+	endonuclease III	NA	NA	NA	NA	NA
SQG94905.1|855454_856141_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQG94906.1|856130_856919_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG94907.1|856958_858065_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQG94908.1|858122_858992_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
SQG94909.1|858991_859585_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQG94910.1|859828_860869_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
SQG94911.1|860950_862090_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	55.8	4.4e-119
SQG94912.1|862217_862484_-	phage protein	NA	NA	NA	NA	NA
SQG94913.1|862495_862882_-	phage protein	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
SQG94914.1|862884_863235_-	phage DNA-binding protein	NA	M1PKY8	Streptococcus_phage	62.6	1.6e-35
SQG94915.1|863530_863701_+	phage protein	NA	X2L066	Streptococcus_phage	55.8	5.1e-08
SQG94916.1|863726_864515_-	phage membrane protein	NA	NA	NA	NA	NA
SQG94917.1|864565_864757_+	phage DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	69.8	4.7e-18
SQG94918.1|864835_865147_+	phage protein	NA	A1EAC3	Streptococcus_phage	85.3	1.4e-48
SQG94919.1|865148_865319_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQG94920.1|865311_865515_+	phage protein	NA	NA	NA	NA	NA
SQG94921.1|865511_865628_+	phage protein	NA	A7J274	Streptococcus_phage	78.6	2.1e-05
SQG94922.1|865614_865893_+	phage protein	NA	A7J274	Streptococcus_phage	95.7	1.5e-44
SQG94923.1|865889_866027_+	phage protein	NA	NA	NA	NA	NA
SQG94924.1|866036_866240_+	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
SQG94925.1|866327_866627_+	phage protein	NA	A7J277	Streptococcus_phage	98.0	8.7e-43
SQG94926.1|866626_867784_+	phage protein	NA	A7J278	Streptococcus_phage	97.9	3.0e-216
SQG94927.1|867798_868356_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQG94928.1|868398_870321_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQG94929.1|870325_872710_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	97.8	7.4e-286
SQG94930.1|873074_873350_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQG94931.1|873346_874669_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.0	9.6e-251
SQG94932.1|874669_874837_+	phage protein	NA	A7J285	Streptococcus_phage	92.7	4.3e-23
SQG94933.1|874833_875100_+	phage protein	NA	A7J287	Streptococcus_phage	64.0	2.7e-19
SQG94934.1|875102_875645_+	Uncharacterised protein	NA	A0MN47	Thermus_phage	38.9	2.2e-28
SQG94935.1|875736_875928_+	phage protein	NA	NA	NA	NA	NA
SQG94936.1|875924_876341_+	phage protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
SQG94937.1|876430_876883_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQG94938.1|876872_878150_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.5	6.9e-246
SQG94939.1|878165_879698_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.4	3.3e-287
SQG94940.1|879657_881106_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQG94941.1|881205_881322_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQG94942.1|881326_881593_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQG94943.1|881754_882324_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQG94944.1|882336_883224_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQG94945.1|883235_883592_+	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQG94946.1|883602_883881_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQG94947.1|883877_884222_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQG94948.1|884225_884585_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQG94949.1|884596_885196_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQG94950.1|885249_885705_+	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
SQG94951.1|885779_886013_+	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQG94952.1|886027_890410_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.8	3.0e-224
SQG94953.1|890421_891264_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.5	9.7e-156
SQG94954.1|891273_893256_+	phage protein	NA	A7J2A7	Streptococcus_phage	93.9	0.0e+00
SQG94955.1|893252_894476_+	phage protein	NA	A3F657	Streptococcus_phage	48.9	8.5e-44
SQG94956.1|894477_894792_+	phage protein	NA	NA	NA	NA	NA
SQG94957.1|894802_896689_+	gp58-like family protein	NA	Q938J9	Temperate_phage	80.3	1.3e-203
SQG94958.1|896700_897132_+	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQG94959.1|897134_897740_+	phage protein	NA	Q938J7	Temperate_phage	99.5	5.6e-89
SQG94960.1|897757_898033_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	98.9	4.4e-41
SQG94961.1|898029_898257_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQG94962.1|898372_899578_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	86.0	1.8e-211
SQG94963.1|899716_900241_+	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQG94964.1|900228_901095_+	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQG94965.1|901397_902111_+	mitogen	NA	Q938J1	Temperate_phage	59.5	9.0e-78
SQG94966.1|902392_903181_+	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	1.2e-46
SQG94967.1|903291_903480_+	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
SQG94968.1|904070_904685_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQG94969.1|904815_905601_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQG94970.1|905610_906309_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQG94971.1|906308_906680_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG94972.1|906863_909974_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	5.4e-119
916322:916339	attR	TGCCTACTTTGCTGAAAT	NA	NA	NA	NA
>prophage 5
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	1115047	1172463	1913208	portal,terminase,integrase,protease,tail	Streptococcus_phage(58.93%)	75	1131594:1131609	1177817:1177832
SQG95170.1|1115047_1115374_-|protease	protease	protease	NA	NA	NA	NA
SQG95171.1|1115403_1116189_-	acetyl esterase	NA	NA	NA	NA	NA
SQG95172.1|1116321_1117983_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQG95173.1|1118186_1118945_-	spermidine/putrescine import ATP-binding protein potA	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
SQG95174.1|1118941_1119811_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG95175.1|1119986_1120151_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95176.1|1120155_1121154_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG95177.1|1121507_1123160_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQG95178.1|1123219_1124467_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQG95179.1|1124456_1125638_-	permease	NA	NA	NA	NA	NA
SQG95180.1|1125695_1126172_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
SQG95181.1|1126775_1127486_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQG95182.1|1127511_1128291_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.7	9.3e-28
SQG95183.1|1128462_1129797_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
SQG95184.1|1129797_1129905_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	5.5e-08
SQG95185.1|1129908_1130094_-	phage protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
SQG95186.1|1130090_1130387_-	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQG95187.1|1130397_1131009_-	phage protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
SQG95188.1|1131011_1131443_-	phage protein	NA	Q938J8	Temperate_phage	99.3	5.2e-73
SQG95189.1|1131454_1133470_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.9	1.2e-212
1131594:1131609	attL	TCAATCATTTTTGTCA	NA	NA	NA	NA
SQG95190.1|1133480_1133795_-	phage protein	NA	NA	NA	NA	NA
SQG95191.1|1133796_1135011_-	phage protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
SQG95192.1|1135007_1137155_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.0	0.0e+00
SQG95193.1|1137151_1137859_-	phage protein	NA	Q938K2	Temperate_phage	69.8	1.1e-91
SQG95194.1|1137858_1141782_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
SQG95195.1|1141991_1142318_-	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQG95196.1|1142370_1142979_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQG95197.1|1142994_1143420_-	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQG95198.1|1143416_1143794_-	phage protein	NA	J7KDM3	Streptococcus_phage	76.0	1.5e-47
SQG95199.1|1143790_1144138_-	phage protein	NA	J7KJ42	Streptococcus_phage	80.9	2.6e-46
SQG95200.1|1144134_1144437_-	phage protein	NA	J7KC36	Streptococcus_phage	88.8	3.0e-43
SQG95201.1|1144581_1145766_-	phage protein	NA	J7KJ82	Streptococcus_phage	76.6	1.5e-162
SQG95202.1|1145790_1146456_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	1.9e-90
SQG95203.1|1146433_1147654_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	5.8e-186
SQG95204.1|1147687_1147912_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQG95205.1|1147904_1148075_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQG95206.1|1148071_1149826_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
SQG95207.1|1149840_1150308_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQG95208.1|1150476_1150818_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	89.8	9.6e-54
SQG95209.1|1150814_1150955_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95210.1|1151053_1151239_+	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQG95211.1|1151290_1151668_+	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQG95212.1|1151805_1152267_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95213.1|1152285_1153200_-	phage protein	NA	NA	NA	NA	NA
SQG95214.1|1153971_1154412_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQG95215.1|1154684_1155320_-	phage protein	NA	L0P368	Streptococcus_phage	68.4	2.5e-87
SQG95216.1|1155319_1155721_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95217.1|1155818_1156046_-	phage protein	NA	A3F630	Streptococcus_phage	76.0	1.9e-26
SQG95218.1|1156049_1156535_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	4.6e-94
SQG95219.1|1156538_1156823_-	phage protein	NA	A3F628	Streptococcus_phage	91.5	8.6e-40
SQG95220.1|1156819_1157233_-	phage protein	NA	Q938M1	Temperate_phage	63.8	2.4e-35
SQG95221.1|1157229_1157514_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQG95222.1|1157507_1157759_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	98.8	1.6e-42
SQG95223.1|1157755_1158112_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	96.6	4.6e-59
SQG95224.1|1158095_1158416_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	5.5e-51
SQG95225.1|1158450_1158825_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.7	8.2e-14
SQG95226.1|1159075_1159990_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	79.9	3.9e-134
SQG95227.1|1159995_1160550_-	DNA primase	NA	J7KH16	Streptococcus_phage	93.3	3.1e-86
SQG95228.1|1160539_1161343_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.5e-150
SQG95229.1|1161354_1161813_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	100.0	3.8e-82
SQG95230.1|1161828_1163058_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.8	1.3e-236
SQG95231.1|1163159_1163840_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQG95232.1|1163840_1164323_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	98.8	7.9e-78
SQG95233.1|1164551_1164866_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	1.2e-50
SQG95234.1|1164881_1165019_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	5.4e-16
SQG95235.1|1165015_1165312_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	100.0	2.1e-49
SQG95236.1|1165348_1165612_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	98.9	3.6e-40
SQG95237.1|1165623_1165863_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQG95238.1|1165936_1166419_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95239.1|1166415_1166562_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95240.1|1166736_1167525_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQG95241.1|1167534_1167840_+	phage membrane protein	NA	NA	NA	NA	NA
SQG95242.1|1167923_1169048_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	98.9	2.4e-210
SQG95243.1|1169321_1169942_+	phage protein	NA	NA	NA	NA	NA
SQG95244.1|1170198_1172463_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
1177817:1177832	attR	TCAATCATTTTTGTCA	NA	NA	NA	NA
>prophage 6
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	1219277	1247324	1913208		Streptococcus_phage(85.0%)	22	NA	NA
SQG95289.1|1219277_1219724_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	3.0e-23
SQG95290.1|1219892_1221110_-	Mobile element protein	NA	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
SQG95291.1|1221191_1221395_-	Mobile element protein	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
SQG95292.1|1221855_1222086_-	Helix-turn-helix domain	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
SQG95293.1|1222082_1222505_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
SQG95294.1|1223009_1223363_+	anaerobic benzoate catabolism transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
SQG95295.1|1223708_1225628_-	tetracycline resistance protein TetM	NA	A0A1S5SF82	Streptococcus_phage	98.3	0.0e+00
SQG95296.1|1226004_1226940_-	putative conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
SQG95297.1|1226936_1227938_-	lipoprotein, NLP/P60 family	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
SQG95298.1|1227934_1230046_-	Tn916 ORF15 signal peptide containing protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
SQG95299.1|1230114_1232562_-	Type IV secretory pathway, VirB4 components	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
SQG95300.1|1232545_1233052_-	TcpE family	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
SQG95301.1|1233026_1233524_-	Antirestriction protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
SQG95302.1|1233640_1233862_-	FIG086557: Conjugation related protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
SQG95303.1|1233904_1235110_-	transcriptional regulator protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
SQG95304.1|1235287_1236673_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
SQG95305.1|1236701_1237085_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
SQG95306.1|1237103_1237418_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
SQG95307.1|1237733_1238006_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQG95308.1|1238090_1243763_-	helicase	NA	A0A248SL14	Klebsiella_phage	30.6	1.1e-90
SQG95309.1|1243955_1245422_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG95310.1|1245506_1247324_-	putative DNA topoisomerase	NA	A0A2H4UU47	Bodo_saltans_virus	22.7	1.3e-16
>prophage 7
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	1293425	1393097	1913208	capsid,transposase,terminase,holin,integrase,protease,head,tRNA,tail	Temperate_phage(35.82%)	113	1336160:1336176	1387845:1387861
SQG95351.1|1293425_1293719_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG95352.1|1294150_1294321_+|transposase	transposase	transposase	U5P429	Shigella_phage	46.3	1.5e-07
SQG95353.1|1294360_1294576_+	Transposase	NA	U5P429	Shigella_phage	42.4	1.7e-08
SQG95354.1|1294672_1295368_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG95355.1|1295386_1296148_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG95356.1|1296144_1296366_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQG95357.1|1296400_1296535_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95358.1|1296698_1299317_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.9e-61
SQG95359.1|1299703_1300759_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQG95360.1|1300821_1301493_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQG95361.1|1301594_1302791_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG95362.1|1303165_1304971_-	oligoendopeptidase F	NA	NA	NA	NA	NA
SQG95363.1|1304983_1305946_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQG95364.1|1306240_1306957_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQG95365.1|1307075_1307780_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQG95366.1|1307981_1309010_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQG95367.1|1309049_1310237_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG95368.1|1310350_1310941_-	S11 family peptidase	NA	NA	NA	NA	NA
SQG95369.1|1310937_1311186_-	lipoprotein	NA	NA	NA	NA	NA
SQG95370.1|1311241_1311388_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95371.1|1311554_1312160_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQG95372.1|1312256_1313297_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQG95373.1|1313367_1315611_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQG95374.1|1315591_1316254_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQG95375.1|1316452_1317193_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQG95376.1|1317232_1318087_+	methyltransferase	NA	NA	NA	NA	NA
SQG95377.1|1318076_1318355_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
SQG95378.1|1318378_1320379_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	5.8e-66
SQG95379.1|1320506_1322126_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQG95380.1|1322432_1323977_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	2.4e-35
SQG95381.1|1324224_1324920_-	integral membrane family protein	NA	NA	NA	NA	NA
SQG95382.1|1324999_1326391_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQG95383.1|1326589_1327636_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQG95384.1|1327736_1328333_-	recombination protein	NA	NA	NA	NA	NA
SQG95385.1|1329122_1329902_-	formate transporter	NA	NA	NA	NA	NA
SQG95386.1|1330025_1330568_-	membrane protein	NA	NA	NA	NA	NA
SQG95387.1|1330728_1331250_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQG95388.1|1331356_1332052_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQG95389.1|1332290_1333226_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQG95390.1|1333525_1335388_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
SQG95391.1|1335917_1336100_-	paratox	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
1336160:1336176	attL	ATCATTTTGAATTTAAC	NA	NA	NA	NA
SQG95392.1|1336212_1336995_-	Enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
SQG95393.1|1337242_1338367_-	phage protein, Fic family	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
SQG95394.1|1338502_1339720_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	59.3	9.1e-163
SQG95395.1|1339716_1339830_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.3	4.4e-08
SQG95396.1|1339838_1340066_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQG95397.1|1340062_1340338_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQG95398.1|1340347_1340965_-	phage protein	NA	A3F662	Streptococcus_phage	94.6	8.3e-88
SQG95399.1|1340967_1341129_-	phage protein	NA	NA	NA	NA	NA
SQG95400.1|1341142_1343038_-	phage protein	NA	Q938J9	Temperate_phage	52.8	5.9e-76
SQG95401.1|1343048_1343363_-	phage protein	NA	NA	NA	NA	NA
SQG95402.1|1343364_1344579_-	phage protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
SQG95403.1|1344575_1346723_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	95.4	0.0e+00
SQG95404.1|1346719_1347436_-	phage protein	NA	Q938K2	Temperate_phage	100.0	2.9e-137
SQG95405.1|1347432_1350693_-	phage protein	NA	Q938K3	Temperate_phage	99.5	0.0e+00
SQG95406.1|1350682_1351264_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
SQG95407.1|1351267_1351702_-	phage protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
SQG95408.1|1351740_1352226_-|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
SQG95409.1|1352225_1352624_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
SQG95410.1|1352620_1352977_-	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQG95411.1|1352976_1353336_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQG95412.1|1353298_1353715_-	phage protein	NA	Q938K7	Temperate_phage	99.1	3.3e-56
SQG95413.1|1353768_1354587_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQG95414.1|1354590_1355199_-	phage protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
SQG95415.1|1355330_1355552_-	secreted phage protein	NA	Q938K9	Temperate_phage	98.6	9.6e-31
SQG95416.1|1355659_1355899_-	phage protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
SQG95417.1|1355870_1357349_-|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.8	5.3e-274
SQG95418.1|1357353_1358856_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	100.0	5.4e-282
SQG95419.1|1358869_1360081_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SQG95420.1|1360163_1360637_-	phage protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
SQG95421.1|1360687_1361065_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SQG95422.1|1361517_1362195_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
SQG95423.1|1362173_1362692_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
SQG95424.1|1363604_1364042_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	98.6	6.7e-76
SQG95425.1|1364308_1364944_-	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
SQG95426.1|1364945_1365230_-	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.3	2.8e-38
SQG95427.1|1365226_1365640_-	phage protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
SQG95428.1|1365649_1365919_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQG95429.1|1365915_1366200_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
SQG95430.1|1366193_1366382_-	phage protein	NA	A3F626	Streptococcus_phage	82.9	6.7e-09
SQG95431.1|1366504_1366609_-	phage associated protein	NA	NA	NA	NA	NA
SQG95432.1|1366605_1367001_-	phage protein	NA	Q5YA86	Bacillus_phage	58.8	1.8e-40
SQG95433.1|1366993_1367176_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95434.1|1367416_1369660_-	ATPase	NA	Q5YA88	Bacillus_phage	63.7	4.7e-282
SQG95435.1|1369682_1369877_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95436.1|1369889_1371473_-	DNA/RNA helicase	NA	A0A097BY72	Enterococcus_phage	77.8	2.0e-234
SQG95437.1|1371472_1372066_-	phage protein	NA	A0A097BY29	Enterococcus_phage	43.5	1.7e-29
SQG95438.1|1372087_1372222_-	phage protein	NA	NA	NA	NA	NA
SQG95439.1|1372260_1373343_-	phage protein	NA	A0A0K2CZH1	Paenibacillus_phage	53.3	2.5e-103
SQG95440.1|1373357_1374674_-	chromosome segregation ATPases	NA	A0A097BY67	Enterococcus_phage	63.8	7.8e-152
SQG95441.1|1374660_1374903_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95442.1|1374904_1375123_-	phage protein	NA	NA	NA	NA	NA
SQG95443.1|1375132_1375276_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	83.7	3.4e-13
SQG95444.1|1375259_1375490_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95445.1|1375530_1375806_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	97.0	1.3e-29
SQG95446.1|1375993_1376353_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	95.0	1.7e-56
SQG95447.1|1376336_1376714_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.6e-54
SQG95448.1|1376724_1377246_+	phage protein	NA	Q938N8	Temperate_phage	97.7	7.5e-66
SQG95449.1|1377364_1378441_+|integrase	prophage LambdaSa1, site-specific recombinase phage integrase family protein	integrase	Q0R5B4	Streptococcus_phage	41.2	7.5e-68
SQG95450.1|1378803_1379151_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQG95451.1|1379265_1380540_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.3	6.5e-95
SQG95452.1|1380520_1380805_-	chorismate mutase	NA	NA	NA	NA	NA
SQG95453.1|1380980_1381430_-	flavodoxin	NA	NA	NA	NA	NA
SQG95454.1|1381823_1382765_+	DHH family protein	NA	NA	NA	NA	NA
SQG95455.1|1382879_1383140_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQG95456.1|1383236_1384436_-	tagatose-6-phosphate aldose/ketose isomerase	NA	NA	NA	NA	NA
SQG95457.1|1384455_1385178_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG95458.1|1385334_1386882_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQG95459.1|1387034_1388432_-	dipeptidase	NA	NA	NA	NA	NA
1387845:1387861	attR	GTTAAATTCAAAATGAT	NA	NA	NA	NA
SQG95460.1|1388564_1389476_-	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.0e-105
SQG95461.1|1389472_1390450_-	transporter	NA	A1IMD5	Streptococcus_phage	73.8	4.7e-138
SQG95462.1|1390446_1391337_-	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.5	5.1e-06
SQG95463.1|1391750_1393097_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
>prophage 8
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	1499793	1531078	1913208	transposase,tRNA,protease,bacteriocin	Tupanvirus(14.29%)	35	NA	NA
SQG95567.1|1499793_1501737_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.6	6.8e-120
SQG95568.1|1502158_1503493_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQG95569.1|1503494_1504493_-	glycosyltransferase	NA	NA	NA	NA	NA
SQG95570.1|1504623_1505625_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQG95571.1|1505798_1506884_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQG95572.1|1506932_1507598_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQG95573.1|1507608_1507986_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQG95574.1|1508130_1509057_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
SQG95575.1|1509267_1509951_+	membrane protein	NA	NA	NA	NA	NA
SQG95576.1|1509950_1510877_+	membrane protein	NA	NA	NA	NA	NA
SQG95577.1|1510926_1511574_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQG95578.1|1511688_1512408_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQG95579.1|1512413_1512881_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	7.5e-41
SQG95580.1|1512883_1515214_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	3.0e-90
SQG95581.1|1515310_1515547_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQG95582.1|1515735_1516929_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG95583.1|1517050_1518553_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	1.5e-74
SQG95584.1|1518742_1519336_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQG95585.1|1519332_1520160_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQG95586.1|1520331_1521198_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG95587.1|1522268_1522538_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95588.1|1522885_1523275_-	histidine kinase	NA	NA	NA	NA	NA
SQG95589.1|1523680_1524445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95590.1|1524697_1525099_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95591.1|1525535_1525856_-	role in replication	NA	NA	NA	NA	NA
SQG95592.1|1525878_1526103_-|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQG95593.1|1526412_1526835_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG95594.1|1526831_1526981_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQG95595.1|1527318_1527501_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQG95596.1|1527589_1527724_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQG95597.1|1528121_1528376_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG95598.1|1528680_1529157_-	phosphohydrolase	NA	NA	NA	NA	NA
SQG95599.1|1529176_1530073_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQG95600.1|1530192_1530600_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQG95601.1|1530580_1531078_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483414	Streptococcus pyogenes strain NCTC13736 genome assembly, chromosome: 1	1913208	1579600	1585634	1913208		Streptococcus_phage(100.0%)	9	NA	NA
SQG95645.1|1579600_1580428_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
SQG95646.1|1580501_1580858_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQG95647.1|1581156_1581786_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQG95648.1|1581832_1582225_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG95649.1|1582251_1583115_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	1.2e-116
SQG95650.1|1583119_1583443_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQG95651.1|1583847_1584087_-	Tpl protein	NA	NA	NA	NA	NA
SQG95652.1|1584105_1584981_-	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	41.4	2.0e-55
SQG95653.1|1584998_1585634_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
