The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483411	Haemophilus influenzae strain NCTC11426 genome assembly, chromosome: 1	1834484	1024754	1125348	1834484	portal,head,capsid,holin,tail,protease	Mannheimia_phage(25.93%)	82	NA	NA
SQG88089.1|1024754_1025219_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQG88090.1|1025236_1026022_+	haloacid dehalogenase-like protein	NA	NA	NA	NA	NA
SQG88091.1|1026058_1027858_-	long chain fatty acid CoA ligase	NA	A0A1V0SBX8	Catovirus	26.0	7.4e-44
SQG88092.1|1028050_1029070_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG88093.1|1029320_1029947_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.6	7.5e-20
SQG88094.1|1030009_1030276_+	RNA polymerase subunit omega	NA	NA	NA	NA	NA
SQG88095.1|1030819_1032934_+	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.8	2.5e-11
SQG88096.1|1032930_1035012_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
SQG88097.1|1035042_1035852_+	glutamate racemase	NA	NA	NA	NA	NA
SQG88098.1|1036062_1037208_+	L-lactate dehydrogenase, FMN-linked	NA	NA	NA	NA	NA
SQG88099.1|1043313_1043541_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG88100.1|1043550_1044063_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG88101.1|1044326_1045256_+	DNA-binding transcriptional activator, homocysteine-binding	NA	NA	NA	NA	NA
SQG88102.1|1045265_1045601_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
SQG88103.1|1045646_1045985_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
SQG88104.1|1045981_1046311_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
SQG88105.1|1046413_1046647_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQG88106.1|1046722_1048303_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	27.3	4.3e-32
SQG88107.1|1048533_1049322_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
SQG88108.1|1049401_1051381_+	ribonuclease II	NA	Q0GXV6	Lactococcus_phage	25.1	1.1e-24
SQG88109.1|1051807_1059013_+	hemophilus surface fibril	NA	NA	NA	NA	NA
SQG88110.1|1059249_1059891_+	allophanate hydrolase subunit 1	NA	NA	NA	NA	NA
SQG88111.1|1059887_1060817_+	allophanate hydrolase subunit 2	NA	NA	NA	NA	NA
SQG88112.1|1060803_1061541_+	lactam utilization protein	NA	NA	NA	NA	NA
SQG88113.1|1061584_1062778_+	Mn2+ and Fe2+ transporter of the NRAMP family	NA	NA	NA	NA	NA
SQG88114.1|1062858_1064193_-	argininosuccinate synthetase	NA	A0A140XAJ5	Dickeya_phage	79.4	8.4e-53
SQG88115.1|1064369_1065242_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	35.7	7.4e-50
SQG88116.1|1065407_1067756_-	penicillin-binding protein 1b	NA	NA	NA	NA	NA
SQG88117.1|1067762_1068161_-	Uncharacterised protein family (UPF0231)	NA	NA	NA	NA	NA
SQG88118.1|1068117_1068462_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	1.7e-26
SQG88119.1|1068598_1069405_+	methionine aminopeptidase	NA	NA	NA	NA	NA
SQG88120.1|1069497_1072089_+	uridylyltransferase	NA	NA	NA	NA	NA
SQG88121.1|1072878_1073946_+	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase	NA	NA	NA	NA	NA
SQG88122.1|1074242_1074791_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.7	1.6e-29
SQG88123.1|1074861_1075902_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
SQG88124.1|1076060_1076318_+	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)	NA	NA	NA	NA	NA
SQG88125.1|1076397_1078125_+	PEP-protein phosphotransferase of PTS system (enzyme I)	NA	NA	NA	NA	NA
SQG88126.1|1078184_1078685_+	glucose-specific enzyme IIA component of PTS	NA	NA	NA	NA	NA
SQG88127.1|1079032_1079398_+	putative outer membrane protein	NA	A0A1I9LJU6	Stx_converting_phage	34.2	5.9e-09
SQG88128.1|1079461_1080127_+	DNA-binding response regulator in two-component regulatory system with QseC	NA	NA	NA	NA	NA
SQG88129.1|1080123_1081479_+	sensory histidine kinase in two-component regulatory system with QseB	NA	W8CYF6	Bacillus_phage	26.5	5.4e-15
SQG88130.1|1081828_1083772_+|holin	choline transporter of high affinity	holin	A0A2I7QNT1	Vibrio_phage	24.8	2.0e-18
SQG88131.1|1083808_1085284_-	aminopeptidase A	NA	Q6GYZ8	Mycoplasma_phage	35.7	3.2e-45
SQG88132.1|1085391_1086495_+	permease	NA	NA	NA	NA	NA
SQG88133.1|1086491_1087568_+	permease	NA	NA	NA	NA	NA
SQG88134.1|1087761_1090032_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
SQG88135.1|1090681_1091692_-|portal	portal vertex protein	portal	Q19UT6	Mannheimia_phage	61.5	2.3e-119
SQG88136.1|1091701_1092682_-	Terminase, ATPase subunit	NA	Q19UT5	Mannheimia_phage	56.1	3.8e-103
SQG88137.1|1092700_1093483_-	Terminase, ATPase subunit	NA	A0A0M3LRV4	Mannheimia_phage	75.4	7.5e-102
SQG88138.1|1093651_1094458_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.1	3.3e-60
SQG88139.1|1094479_1094680_+|capsid	major capsid protein	capsid	Q94MH4	Enterobacteria_phage	51.7	8.8e-07
SQG88140.1|1095090_1095597_+|head	putative phage head completion	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.1e-32
SQG88141.1|1095596_1095806_+|tail	Probable bacteriophage tail protein X	tail	NA	NA	NA	NA
SQG88142.1|1095807_1096029_+|holin	holin	holin	NA	NA	NA	NA
SQG88143.1|1096021_1096540_+	phage-like lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	5.6e-37
SQG88144.1|1096524_1096794_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG88145.1|1097044_1097341_+	putative zinc finger DksA/TraR C4-type	NA	A0A0M3LS11	Mannheimia_phage	51.7	2.6e-07
SQG88146.1|1097340_1097568_+|tail	bacteriophage tail completion protein gpS-like protein	tail	K4NZQ8	Burkholderia_phage	54.5	9.3e-05
SQG88147.1|1097852_1098248_+|tail	phage-related tail protein	tail	NA	NA	NA	NA
SQG88148.1|1098349_1099186_+|tail	phage-related tail protein	tail	V5YUN9	Pseudomonas_phage	40.7	2.4e-37
SQG88149.1|1099309_1099540_+|tail	phage-like tail protein	tail	NA	NA	NA	NA
SQG88150.1|1099923_1101297_-	Na+-dependent transporters of the SNF family	NA	NA	NA	NA	NA
SQG88151.1|1101355_1101991_-	DNA glycosylase and apyrimidinic (AP) lyase	NA	NA	NA	NA	NA
SQG88152.1|1102170_1102878_-	inner membrane NADH-quinone reductase	NA	NA	NA	NA	NA
SQG88153.1|1102879_1103503_-	oxidoreductase	NA	NA	NA	NA	NA
SQG88154.1|1103502_1104579_-	inner membrane oxidoreductase	NA	NA	NA	NA	NA
SQG88155.1|1104583_1107190_-	electron transport complex protein RnfC	NA	NA	NA	NA	NA
SQG88156.1|1107190_1107772_-	electron transport complex protein RnfB	NA	NA	NA	NA	NA
SQG88157.1|1107859_1108438_-	inner membrane subunit	NA	NA	NA	NA	NA
SQG88158.1|1108721_1109783_-	inner membrane peptidase	NA	A0A2H4UUF9	Bodo_saltans_virus	31.7	7.4e-20
SQG88159.1|1109982_1110648_+	Uncharacterized protein conserved in bacteria (DUF2057)	NA	NA	NA	NA	NA
SQG88160.1|1110715_1112872_+	inner membrane protein	NA	NA	NA	NA	NA
SQG88161.1|1112969_1113512_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	A0A140XBD6	Dickeya_phage	44.5	3.1e-22
SQG88162.1|1113521_1114457_-	arabinose-5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.2	1.8e-41
SQG88163.1|1115080_1115752_-	regulator of cell morphogenesis and cell wall metabolism	NA	NA	NA	NA	NA
SQG88164.1|1117300_1117783_+	molybdopterin biosynthesis, protein C	NA	NA	NA	NA	NA
SQG88165.1|1117784_1118030_+	molybdopterin synthase, small subunit	NA	NA	NA	NA	NA
SQG88166.1|1118030_1118483_+	molybdopterin synthase, large subunit	NA	NA	NA	NA	NA
SQG88167.1|1118537_1121183_-	paraquat-inducible protein B-like protein	NA	NA	NA	NA	NA
SQG88168.1|1121166_1122249_-	paraquat-inducible protein A-like protein	NA	NA	NA	NA	NA
SQG88169.1|1122600_1123239_+	structural transport element	NA	NA	NA	NA	NA
SQG88170.1|1123266_1125348_+|protease	carboxy-terminal protease	protease	A0A0R6PIZ1	Moraxella_phage	32.3	7.1e-83
>prophage 2
LS483411	Haemophilus influenzae strain NCTC11426 genome assembly, chromosome: 1	1834484	1745409	1774521	1834484	tail,transposase,plate,head	Haemophilus_phage(50.0%)	32	NA	NA
SQG88753.1|1745409_1747254_+	abc transporter atp-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	4.8e-22
SQG88754.1|1747331_1747610_-	copper chaperone MerP-like protein	NA	NA	NA	NA	NA
SQG88755.1|1748057_1749698_+	phage protein	NA	B7SDN0	Haemophilus_phage	78.2	8.5e-249
SQG88756.1|1749778_1751401_+	Mu-like prophage FluMu protein gp29	NA	B7SDN1	Haemophilus_phage	68.3	7.0e-203
SQG88757.1|1751384_1752692_+|head	phage head morphogenesis protein, SPP1 gp7 family	head	A0A0M3LSH7	Mannheimia_phage	67.2	1.6e-160
SQG88758.1|1752814_1753231_+	Mu-like prophage FluMu G protein	NA	B7SDN8	Haemophilus_phage	66.7	2.1e-47
SQG88759.1|1753513_1754551_+	Mu phage protein I	NA	B7SDN9	Haemophilus_phage	46.7	7.2e-68
SQG88760.1|1754550_1755474_+	Mu bacteriophage protein T	NA	B7SDP1	Haemophilus_phage	75.2	1.4e-134
SQG88761.1|1755537_1755843_+	Uncharacterised protein	NA	B7SDP3	Haemophilus_phage	47.0	6.9e-19
SQG88762.1|1755852_1756284_+	Mu-like prophage protein GP36	NA	B7SDP4	Haemophilus_phage	60.9	1.3e-36
SQG88763.1|1756267_1756930_+	Mu-like prophage protein gp37	NA	A0A0M3LQJ7	Mannheimia_phage	45.0	1.2e-44
SQG88764.1|1756901_1757084_+	Uncharacterised protein	NA	A0A0M3LQM9	Mannheimia_phage	63.3	1.0e-09
SQG88765.1|1757076_1758492_+|tail	bacteriophage Mu tail sheath family protein	tail	B7SDP8	Haemophilus_phage	62.6	1.1e-156
SQG88766.1|1758501_1758873_+	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	65.0	1.2e-36
SQG88767.1|1758872_1759214_+	Uncharacterised protein	NA	A0A0M3LSI2	Mannheimia_phage	50.5	1.8e-20
SQG88768.1|1759481_1760024_+|tail	phage tail length determination protein	tail	A0A0M3LPB6	Mannheimia_phage	55.2	7.1e-35
SQG88769.1|1760011_1761610_+|tail	phage tail length determination protein	tail	A0A0M3LPB6	Mannheimia_phage	60.6	5.4e-99
SQG88770.1|1761762_1763097_+	putative phage virion protein	NA	F6MIL2	Haemophilus_phage	45.6	6.3e-109
SQG88771.1|1763086_1764211_+	bacteriophage Mu P family protein	NA	F6MIL3	Haemophilus_phage	72.7	1.4e-146
SQG88772.1|1764220_1764856_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	58.3	4.7e-62
SQG88773.1|1764925_1765276_+	phage GP46 family protein	NA	A0A0M3LQK5	Mannheimia_phage	73.3	1.2e-43
SQG88774.1|1765290_1766355_+|tail	Mu phage tail protein gp47	tail	F6MIL6	Haemophilus_phage	67.1	2.6e-129
SQG88775.1|1766354_1766948_+	Uncharacterized protein conserved in bacteria (DUF2313)	NA	F6MIL7	Haemophilus_phage	63.0	1.7e-66
SQG88776.1|1766951_1768931_+|tail	tail fiber protein	tail	Q7Y5S2	Haemophilus_phage	79.0	1.1e-24
SQG88777.1|1768924_1769560_+	HP1	NA	Q94MX9	Haemophilus_virus	50.0	2.2e-27
SQG88778.1|1769552_1769822_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG88779.1|1770225_1770345_+	mu com-like protein	NA	NA	NA	NA	NA
SQG88780.1|1770406_1771045_+	D12 class N6 adenine-specific DNA methyltransferase	NA	F6MIM2	Haemophilus_phage	66.7	4.7e-78
SQG88781.1|1771316_1771535_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG88782.1|1772332_1773469_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	56.7	1.6e-121
SQG88783.1|1773514_1773931_+|transposase	ISSoc3 transposase	transposase	A0A1S5RHE3	Helicobacter_phage	66.4	4.2e-51
SQG88784.1|1773990_1774521_-	antimicrobial peptide transporter subunit	NA	A0A2K9L3Z8	Tupanvirus	28.3	3.6e-07
>prophage 3
LS483411	Haemophilus influenzae strain NCTC11426 genome assembly, chromosome: 1	1834484	1792311	1800851	1834484		Escherichia_phage(71.43%)	10	NA	NA
SQG88799.1|1792311_1792965_+	BexA	NA	M1HXU1	Acanthocystis_turfacea_Chlorella_virus	25.6	9.3e-05
SQG88800.1|1793176_1793662_+	superoxide dismutase, Cu, Zn	NA	Q9MC02	Salmonella_phage	59.7	2.3e-45
SQG88801.1|1793751_1794030_-	putative heavy metal transport/detoxification protein	NA	NA	NA	NA	NA
SQG88802.1|1794038_1794401_-	putative mercuric transport protein MerT	NA	NA	NA	NA	NA
SQG88803.1|1794375_1795485_-	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
SQG88804.1|1795738_1798159_+	dimethyl sulfoxide reductase, anaerobic subunit A	NA	A0A077SK27	Escherichia_phage	50.5	4.8e-224
SQG88805.1|1798169_1798787_+	oxidoreductase, Fe-S subunit	NA	A0A077SL61	Escherichia_phage	57.3	3.7e-72
SQG88806.1|1798788_1799628_+	oxidoreductase, membrane subunit	NA	A0A077SK59	Escherichia_phage	33.2	1.3e-19
SQG88807.1|1799739_1800351_+	twin-argninine leader-binding protein for DmsA and TorA	NA	A0A077SLS7	Escherichia_phage	32.5	3.0e-21
SQG88808.1|1800350_1800851_+	ferredoxin	NA	A0A077SLP0	Escherichia_phage	31.4	9.2e-13
