The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	38421	48834	2249230		Microbacterium_phage(16.67%)	7	NA	NA
SQG91919.1|38421_42147_+	phosphoribosyl formylglycin amidine synthase	NA	A6N228	Microbacterium_phage	25.6	2.9e-34
SQG91920.1|42265_43717_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	5.5e-58
SQG91921.1|43869_44898_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.6	3.7e-64
SQG91922.1|44890_45445_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.1	3.8e-23
SQG91923.1|45551_46064_+	vanZ protein	NA	NA	NA	NA	NA
SQG91924.1|46082_47627_+	IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	48.4	1.6e-76
SQG91925.1|47706_48834_-	autolysin	NA	F8HGP2	Streptococcus_phage	28.6	9.1e-08
>prophage 2
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	67806	100959	2249230	integrase,transposase	unidentified_phage(30.0%)	44	81561:81575	98227:98241
SQG91943.1|67806_68781_-|transposase	transposase	transposase	H7BUM7	unidentified_phage	33.1	9.5e-38
SQG91944.1|69050_69359_+	SSU ribosomal protein S10p (S20e)	NA	NA	NA	NA	NA
SQG91945.1|69464_70091_+	LSU ribosomal protein L3p (L3e)	NA	NA	NA	NA	NA
SQG91946.1|70114_70738_+	LSU ribosomal protein L4p (L1e)	NA	NA	NA	NA	NA
SQG91947.1|70737_71034_+	LSU ribosomal protein L23p (L23Ae)	NA	NA	NA	NA	NA
SQG91948.1|71051_71885_+	50S ribosomal protein L2	NA	NA	NA	NA	NA
SQG91949.1|72023_72302_+	30S ribosomal protein S19	NA	NA	NA	NA	NA
SQG91950.1|72317_72662_+	LSU ribosomal protein L22p (L17e)	NA	NA	NA	NA	NA
SQG91951.1|72674_73328_+	SSU ribosomal protein S3p (S3e)	NA	NA	NA	NA	NA
SQG91952.1|73331_73745_+	LSU ribosomal protein L16p (L10e)	NA	NA	NA	NA	NA
SQG91953.1|73754_73961_+	50S ribosomal protein L29	NA	NA	NA	NA	NA
SQG91954.1|73988_74249_+	SSU ribosomal protein S17p (S11e)	NA	NA	NA	NA	NA
SQG91955.1|74273_74642_+	LSU ribosomal protein L14p (L23e)	NA	NA	NA	NA	NA
SQG91956.1|74725_75031_+	LSU ribosomal protein L24p (L26e)	NA	NA	NA	NA	NA
SQG91957.1|75054_75597_+	LSU ribosomal protein L5p (L11e)	NA	NA	NA	NA	NA
SQG91958.1|75627_75798_+	SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent	NA	NA	NA	NA	NA
SQG91959.1|76005_76404_+	30S ribosomal protein S8	NA	NA	NA	NA	NA
SQG91960.1|76605_77142_+	50S ribosomal protein L6	NA	NA	NA	NA	NA
SQG91961.1|77246_77603_+	50S ribosomal protein L18	NA	NA	NA	NA	NA
SQG91962.1|77621_78116_+	SSU ribosomal protein S5p (S2e)	NA	NA	NA	NA	NA
SQG91963.1|78130_78313_+	50S ribosomal protein L30	NA	NA	NA	NA	NA
SQG91964.1|78527_78968_+	50S ribosomal protein L15	NA	NA	NA	NA	NA
SQG91965.1|78984_80289_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQG91966.1|80435_81077_+	adenylate kinase	NA	NA	NA	NA	NA
SQG91967.1|81194_81413_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
SQG91968.1|81438_81555_+	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
81561:81575	attL	AAAGGAGAAAAAATG	NA	NA	NA	NA
SQG91969.1|81572_81938_+	SSU ribosomal protein S13p (S18e)	NA	NA	NA	NA	NA
SQG91970.1|81955_82339_+	SSU ribosomal protein S11p (S14e)	NA	NA	NA	NA	NA
SQG91971.1|82384_83323_+	DNA-directed RNA polymerase alpha subunit	NA	NA	NA	NA	NA
SQG91972.1|83337_83724_+	LSU ribosomal protein L17p	NA	NA	NA	NA	NA
SQG91973.1|84216_85059_-|transposase	putative transposase	transposase	H7BW61	unidentified_phage	35.0	8.2e-30
SQG91974.1|85086_85212_-|transposase	truncated IS1239 transposase	transposase	NA	NA	NA	NA
SQG91975.1|85408_86437_+|transposase	transposase	transposase	H7BUM7	unidentified_phage	32.2	6.9e-39
SQG91976.1|92904_94113_-	FRG domain	NA	Q9AZ51	Lactococcus_phage	52.1	4.1e-14
SQG91977.1|94178_95312_-|integrase	integrase	integrase	A0A1B2AQ00	Phage_Wrath	34.0	7.9e-36
SQG91978.1|95316_95511_-	hyptothetic protein	NA	NA	NA	NA	NA
SQG91979.1|95579_96926_-	plasmid replication protein	NA	A0A190WHA5	Circovirus	27.1	9.2e-07
SQG91980.1|97276_97663_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG91981.1|97650_97989_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG91982.1|98238_98694_+	HTH-type transcriptional regulator AnsR family protein	NA	A8ASM2	Listeria_phage	40.2	3.0e-10
98227:98241	attR	AAAGGAGAAAAAATG	NA	NA	NA	NA
SQG91983.1|98991_99282_+	Transposase	NA	A0A0N7GFG6	Staphylococcus_phage	56.0	9.1e-21
SQG91984.1|99440_100121_+|transposase	transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	65.5	1.8e-43
SQG91985.1|100208_100541_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG91986.1|100551_100959_-	transcriptional regulator	NA	A0A0S2MVM8	Bacillus_phage	43.7	5.2e-06
>prophage 3
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	227255	284758	2249230	protease,tRNA,transposase,integrase	Temperate_phage(15.38%)	56	258090:258104	289928:289942
SQG92104.1|227255_227699_+|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQG92105.1|227798_229121_-	streptokinase	NA	NA	NA	NA	NA
SQG92106.1|229448_230297_+	leucine rich protein	NA	NA	NA	NA	NA
SQG92107.1|230595_231729_+	Multiple sugar-binding transport ATP-binding protein msmK	NA	G9BWD6	Planktothrix_phage	31.3	1.4e-19
SQG92108.1|231810_233424_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQG92109.1|233589_237213_+	pullulanase	NA	NA	NA	NA	NA
SQG92110.1|237365_237656_-	SpeK	NA	Q938I9	Temperate_phage	47.1	5.0e-11
SQG92111.1|237811_238162_+	thioredoxin	NA	NA	NA	NA	NA
SQG92112.1|238268_238628_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQG92113.1|238855_239605_+	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	43.2	1.5e-22
SQG92114.1|239617_240412_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQG92115.1|240509_241769_+|protease	pheromone-processing membrane metalloprotease	protease	NA	NA	NA	NA
SQG92116.1|241974_243816_+|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG92117.1|243868_244426_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG92118.1|244542_248940_+	DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	35.3	1.7e-17
SQG92119.1|249105_249534_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQG92120.1|249619_250171_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
SQG92121.1|250238_250853_-	peptide deformylase	NA	A0A2I7S809	Vibrio_phage	36.2	5.1e-13
SQG92122.1|251152_251818_-	Crp-like transcriptional regulator	NA	NA	NA	NA	NA
SQG92123.1|251908_253090_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG92124.1|253237_253507_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQG92125.1|253859_255920_+	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG92126.1|255912_256197_+	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQG92127.1|256223_257603_+	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG92128.1|257615_258344_+	translaldolase	NA	M4QS02	Synechococcus_phage	28.5	5.5e-14
258090:258104	attL	ATCATGGAAGAAGCT	NA	NA	NA	NA
SQG92129.1|258623_260768_+	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQG92130.1|260760_261513_+	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQG92131.1|261521_262106_+	serine acetyl transferase	NA	NA	NA	NA	NA
SQG92132.1|262356_262587_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92133.1|262614_263958_+|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.7	1.0e-53
SQG92134.1|263950_264352_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
SQG92135.1|264468_264795_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92136.1|264794_265499_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
SQG92137.1|265909_266695_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG92138.1|266742_267489_+	rRNA methyltransferase	NA	NA	NA	NA	NA
SQG92139.1|267492_268011_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG92140.1|268109_268970_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	32.8	2.2e-09
SQG92141.1|269104_269803_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG92142.1|269799_270006_+	Cro/CI family transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	56.1	2.3e-10
SQG92143.1|270137_271166_+|transposase	transposase	transposase	H7BUM7	unidentified_phage	33.0	4.8e-40
SQG92144.1|271401_271848_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQG92145.1|271868_272261_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
SQG92146.1|272404_273559_-|integrase	integrase	integrase	Q938N9	Temperate_phage	31.7	3.1e-43
SQG92147.1|273613_274132_-	putative transcriptional regulator, Cro/CI family	NA	NA	NA	NA	NA
SQG92148.1|274278_274563_+	DNA-binding protein	NA	NA	NA	NA	NA
SQG92149.1|274574_275429_+	gp49 bacteriophage-like protein	NA	Q7Y4K5	Streptococcus_phage	55.3	7.5e-47
SQG92150.1|275439_275730_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92151.1|275683_276088_+	Tn5252, Orf 9 protein	NA	NA	NA	NA	NA
SQG92152.1|276084_276441_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG92153.1|276699_278250_-	DNA (cytosine-5-)-methyltransferase	NA	M4QNR3	Ostreococcus_lucimarinus_virus	29.3	4.0e-22
SQG92154.1|278441_278903_+	putative phage transcriptional regulator	NA	NA	NA	NA	NA
SQG92155.1|278902_280123_+	endonuclease	NA	NA	NA	NA	NA
SQG92156.1|280137_281325_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92157.1|281321_283220_+	Type IV secretory pathway, VirB4 components	NA	NA	NA	NA	NA
SQG92158.1|283540_283762_-|integrase	integrase/recombinase, phage integrase family	integrase	NA	NA	NA	NA
SQG92159.1|283834_284758_-|integrase	phage integrase family integrase	integrase	NA	NA	NA	NA
289928:289942	attR	AGCTTCTTCCATGAT	NA	NA	NA	NA
>prophage 4
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	464213	473777	2249230		Streptococcus_phage(81.82%)	14	NA	NA
SQG92333.1|464213_464978_+	branched-chain amino acid ABC transporter ATP binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.2e-17
SQG92334.1|464977_465688_+	branched-chain amino acid ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	28.4	3.0e-17
SQG92335.1|465732_466395_+	5'-AMP-activated protein kinase subunit gamma-3	NA	M1NSC5	Streptococcus_phage	57.4	1.2e-60
SQG92336.1|466481_467117_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	66.3	1.8e-69
SQG92337.1|467132_468005_+	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	41.4	7.7e-55
SQG92338.1|468001_468802_+	stage 0 sporulation protein	NA	NA	NA	NA	NA
SQG92339.1|468794_469118_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	64.2	7.0e-30
SQG92340.1|469122_469986_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	76.0	3.5e-116
SQG92341.1|470012_470405_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG92342.1|470451_471081_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQG92343.1|471197_472289_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	63.4	3.7e-131
SQG92344.1|472314_472866_+	acetyl transferase GNAT family	NA	M1PSC3	Streptococcus_phage	53.6	3.0e-49
SQG92345.1|472926_473424_+	methylated-DNA-protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	52.9	1.4e-40
SQG92346.1|473420_473777_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
>prophage 5
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	481637	534017	2249230	tRNA,transposase,bacteriocin,protease,integrase	Bacillus_phage(21.43%)	55	529720:529737	541017:541034
SQG92355.1|481637_483005_+|protease	interleukin-8 protease	protease	NA	NA	NA	NA
SQG92356.1|482955_484386_+	cell envelope proteinase A	NA	NA	NA	NA	NA
SQG92357.1|484411_486388_+	cell envelope proteinase A	NA	NA	NA	NA	NA
SQG92358.1|486600_488268_+	cell shape-determining protein	NA	NA	NA	NA	NA
SQG92359.1|488549_489257_+	permease	NA	NA	NA	NA	NA
SQG92360.1|489524_491522_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.7	7.8e-87
SQG92361.1|492054_493068_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	2.9e-98
SQG92362.1|493071_493545_+	ribonucleotide reductase stimulatory protein	NA	F8WQ19	Bacillus_phage	37.8	3.7e-11
SQG92363.1|493528_495715_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	2.9e-167
SQG92364.1|496012_497347_+	branched-chain amino acid carrier protein	NA	NA	NA	NA	NA
SQG92365.1|497505_497607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92366.1|497746_498100_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92367.1|498410_498647_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQG92368.1|498639_499338_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SQG92369.1|499334_499577_+	group-specific protein	NA	NA	NA	NA	NA
SQG92370.1|499594_500044_+	cytoplasmic protein	NA	NA	NA	NA	NA
SQG92371.1|500045_501005_+	trans-1,2-dihydrobenzene-1,2-diol dehydrogenase	NA	NA	NA	NA	NA
SQG92372.1|501338_502676_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQG92373.1|502847_504230_+	N-acetylglucosamine-1-phosphate uridyltransferase	NA	A0A2K9L4K9	Tupanvirus	35.6	1.6e-30
SQG92374.1|504260_504815_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQG92375.1|504815_505067_+	membrane protein	NA	NA	NA	NA	NA
SQG92376.1|505084_505780_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
SQG92377.1|505852_506368_-	iron-dependent repressor	NA	NA	NA	NA	NA
SQG92378.1|506364_506499_-	Iron-dependent repressor	NA	NA	NA	NA	NA
SQG92379.1|506644_507577_+	manganese-binding protein	NA	NA	NA	NA	NA
SQG92380.1|507641_508367_+	manganese transport system ATP-binding protein	NA	A0A1V0SE00	Indivirus	31.8	8.1e-18
SQG92381.1|508367_509216_+	metal cation ABC transporter membrane protein	NA	NA	NA	NA	NA
SQG92382.1|509346_510153_-	peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	37.8	2.1e-22
SQG92383.1|510271_512779_+	cell division protein	NA	S5VNE3	Mycobacterium_phage	51.1	2.6e-87
SQG92384.1|512847_513201_-	integral membrane protein	NA	NA	NA	NA	NA
SQG92385.1|513443_513869_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQG92386.1|513974_514664_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQG92387.1|515121_515289_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92388.1|515556_516285_+	uridylate kinase	NA	NA	NA	NA	NA
SQG92389.1|516313_516871_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQG92390.1|516979_517837_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQG92391.1|517909_518419_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQG92392.1|518415_518631_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG92393.1|518790_519987_+	surface antigen	NA	A0A0E3XB61	Gordonia_phage	38.7	2.8e-15
SQG92394.1|520297_522070_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQG92395.1|522230_523292_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQG92396.1|523338_523914_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQG92397.1|524072_524570_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQG92398.1|524550_524958_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQG92399.1|525078_525975_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQG92400.1|525995_526472_+	phosphohydrolase	NA	NA	NA	NA	NA
SQG92401.1|526780_527032_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92402.1|527576_527807_+	truncated SilB	NA	NA	NA	NA	NA
SQG92403.1|527828_528521_-	ATP-binding cassette, subfamily C,bacterial	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.6	1.5e-08
SQG92404.1|528543_529545_-	competence factor transporting ATP-binding protein/permease ComA	NA	NA	NA	NA	NA
529720:529737	attL	CATTTCATGATGAAAAAA	NA	NA	NA	NA
SQG92405.1|529842_530070_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQG92406.1|530118_530436_+	role in replication	NA	NA	NA	NA	NA
SQG92407.1|530815_531640_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.0	2.2e-43
SQG92408.1|531853_533272_+|transposase	ISSag8, transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.3	3.1e-247
SQG92409.1|533219_534017_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.2	4.7e-59
541017:541034	attR	CATTTCATGATGAAAAAA	NA	NA	NA	NA
>prophage 6
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	558331	610912	2249230	protease,tRNA,transposase	Bacillus_phage(35.71%)	48	NA	NA
SQG92436.1|558331_558847_+|transposase	transposase IS861 orfA	transposase	NA	NA	NA	NA
SQG92437.1|558882_559680_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.2	4.7e-59
SQG92438.1|559736_560663_-	putative sugar transferase	NA	V5USA4	Oenococcus_phage	47.9	1.6e-79
SQG92439.1|560799_561639_-	streptodornase D type	NA	A7J2B8	Streptococcus_phage	55.9	8.7e-48
SQG92440.1|561730_561985_-	deoxyribonuclease precursor	NA	NA	NA	NA	NA
SQG92441.1|562330_562708_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQG92442.1|562717_563383_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
SQG92443.1|563426_564512_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQG92444.1|564685_565687_+	Catabolite control protein A	NA	NA	NA	NA	NA
SQG92445.1|565840_567304_+	alpha-amylase	NA	NA	NA	NA	NA
SQG92446.1|567380_568379_+	glycosyltransferase	NA	NA	NA	NA	NA
SQG92447.1|568380_569715_+	1,2-diacylglycerol 3-glucosyltransferase	NA	NA	NA	NA	NA
SQG92448.1|570138_572082_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.1	5.6e-122
SQG92449.1|572211_573204_+	antibiotic transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	5.2e-15
SQG92450.1|573205_574024_+	Daunorubicin resistance transmembrane protein	NA	NA	NA	NA	NA
SQG92451.1|574025_574811_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG92452.1|574914_575904_-	dihydroxyacetone kinase family protein	NA	NA	NA	NA	NA
SQG92453.1|575918_576455_-	HTH-type dhaKLM operon transcriptional activator dhaS	NA	NA	NA	NA	NA
SQG92454.1|576606_577596_+	dihydroxyacetone kinase subunit	NA	NA	NA	NA	NA
SQG92455.1|577606_578182_+	dihydroxyacetone kinase	NA	NA	NA	NA	NA
SQG92456.1|578181_578556_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
SQG92457.1|578573_579284_+	glycerol uptake facilitator protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	33.3	5.7e-32
SQG92458.1|579416_579986_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92459.1|579954_581055_+	Acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
SQG92460.1|581098_582289_+	long-chain-fatty-acid-CoA ligase	NA	NA	NA	NA	NA
SQG92461.1|582384_583380_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG92462.1|583475_584123_-	ABC transporter permease	NA	NA	NA	NA	NA
SQG92463.1|584137_584839_-	L-cystine transport system permease protein tcyB	NA	NA	NA	NA	NA
SQG92464.1|584852_585653_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG92465.1|585652_586447_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	4.2e-36
SQG92466.1|586705_587416_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	39.0	1.3e-39
SQG92467.1|587408_588761_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	3.6e-35
SQG92468.1|588764_589574_+	metallo-beta-lactamase superfamily protein	NA	A0A0C5AJ83	Bacteriophage	37.5	1.1e-36
SQG92469.1|590331_591024_+	ribonuclease III	NA	A0A167RGU4	Powai_lake_megavirus	31.6	2.5e-24
SQG92470.1|591024_594570_+	Chromosome partition protein smc	NA	NA	NA	NA	NA
SQG92471.1|594909_595557_+|protease	cell-surface protease required for virulence cell	protease	NA	NA	NA	NA
SQG92472.1|595796_596639_+	truncated reticulocyte binding protein	NA	NA	NA	NA	NA
SQG92473.1|597070_597922_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG92474.1|598270_598438_+	Lantibiotic lacticin 3147 A1 precursor	NA	NA	NA	NA	NA
SQG92475.1|598452_598662_+	Lantibiotic lacticin 3147 A2 precursor	NA	NA	NA	NA	NA
SQG92476.1|598678_601600_+	lantibiotic synthetase	NA	NA	NA	NA	NA
SQG92477.1|601550_603698_+	lantibiotic export protein	NA	W8CYL7	Bacillus_phage	27.5	5.7e-35
SQG92478.1|603694_606481_+	lantibiotic synthetase	NA	NA	NA	NA	NA
SQG92479.1|606446_607562_+	putative alcohol dehydrogenase	NA	NA	NA	NA	NA
SQG92480.1|607728_608235_+	multidrug ABC transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	5.1e-19
SQG92481.1|608285_608801_+|transposase	transposase IS861 orfA	transposase	NA	NA	NA	NA
SQG92482.1|608836_609634_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	1.2e-59
SQG92483.1|609778_610912_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	648972	756888	2249230	tRNA,transposase,terminase,integrase,tail	Streptococcus_phage(50.7%)	128	692612:692628	718709:718725
SQG92524.1|648972_650202_-|transposase	transposase	transposase	Q9JMN8	Wolbachia_phage	28.3	2.8e-34
SQG92525.1|650510_651014_+	integral membrane protein	NA	NA	NA	NA	NA
SQG92526.1|650997_651381_+	Surface-layer 125 kDa protein	NA	NA	NA	NA	NA
SQG92527.1|651426_651906_-	glutathione peroxidase	NA	NA	NA	NA	NA
SQG92528.1|651898_653698_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	36.7	6.5e-109
SQG92529.1|653894_656660_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SQG92530.1|656877_658152_+	cell division protein	NA	NA	NA	NA	NA
SQG92531.1|658222_658732_+	RNA polymerase ECF-type sigma factor	NA	NA	NA	NA	NA
SQG92532.1|658715_659795_+	membrane protein	NA	NA	NA	NA	NA
SQG92533.1|659920_661117_+	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	28.2	1.6e-31
SQG92534.1|661436_661859_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92535.1|661863_662004_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92536.1|662022_662250_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
SQG92537.1|662227_663310_+	glycosyl transferase group 2	NA	NA	NA	NA	NA
SQG92538.1|663618_664377_+	triosephosphate isomerase	NA	NA	NA	NA	NA
SQG92539.1|664447_665245_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	51.0	2.5e-60
SQG92540.1|665280_665796_-|transposase	transposase IS861 orfA	transposase	NA	NA	NA	NA
SQG92541.1|665956_666718_-|transposase	ISSdy1, transposase OrfB	transposase	A0A2I7SC85	Paenibacillus_phage	49.4	7.1e-65
SQG92542.1|666771_667062_-	Mobile element protein	NA	A0A0C5AJ30	Paenibacillus_phage	53.9	5.9e-20
SQG92543.1|667115_667274_-	L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase	NA	NA	NA	NA	NA
SQG92544.1|667412_668648_-	alanine adding enzyme	NA	NA	NA	NA	NA
SQG92545.1|668647_669865_-	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase/UDP-N-acetylmuramoylpentapeptide- lysine N(6)-seryltransferase	NA	NA	NA	NA	NA
SQG92546.1|669864_670674_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQG92547.1|671154_672456_-	dGTP triphosphohydrolase	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.4	1.5e-22
SQG92548.1|672537_672945_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG92549.1|673272_675954_+	cation transporting ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.6	2.2e-68
SQG92550.1|676003_676420_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92551.1|676563_677559_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG92552.1|677622_679530_-	oligohyaluronate lyase	NA	NA	NA	NA	NA
SQG92553.1|679616_680438_-	PTS system N-acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
SQG92554.1|680424_681207_-	PTS system N-acetylgalactosamine-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG92555.1|681225_681714_-	PTS system protein	NA	NA	NA	NA	NA
SQG92556.1|681749_682949_-	unsaturated glucuronyl hydrolase	NA	NA	NA	NA	NA
SQG92557.1|682948_683386_-	PTS system N-acetylgalactosamine-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG92558.1|683721_684516_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
SQG92559.1|684540_685182_+	galactose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQG92560.1|685210_686212_+	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA	NA
SQG92561.1|686216_686855_+	keto-hydroxyglutarate-aldolase	NA	NA	NA	NA	NA
SQG92562.1|686879_690083_+	hyaluronate lyase	NA	NA	NA	NA	NA
SQG92563.1|690115_690481_-	membrane protein	NA	NA	NA	NA	NA
SQG92564.1|690470_691346_-	phosphoesterase	NA	NA	NA	NA	NA
SQG92565.1|691533_692127_-	Mobile element protein	NA	Q8W6R2	Burkholderia_virus	30.2	4.0e-15
SQG92566.1|692384_692660_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	43.5	1.3e-13
692612:692628	attL	TGACAAGAGATTGTTTA	NA	NA	NA	NA
SQG92567.1|692963_693608_+	beta-phosphoglucomutase	NA	NA	NA	NA	NA
SQG92568.1|693838_695752_+	putative fructose-1,6-bisphosphatase	NA	NA	NA	NA	NA
SQG92569.1|696010_697132_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
SQG92570.1|697350_698334_+	peptide chain release factor 2	NA	NA	NA	NA	NA
SQG92571.1|698377_699070_+	cell division ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.8	1.6e-31
SQG92572.1|699062_699992_+	putative cell division protein	NA	NA	NA	NA	NA
SQG92573.1|700114_700762_-	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	61.1	1.3e-72
SQG92574.1|700990_703453_+	ATP-dependent DNA helicase	NA	A0A1X9I5C8	Streptococcus_phage	48.8	2.7e-206
SQG92575.1|703734_704931_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQG92576.1|704968_706315_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	29.9	1.0e-53
SQG92577.1|706605_707349_+	membrane protein	NA	NA	NA	NA	NA
SQG92578.1|707481_708372_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQG92579.1|708368_709346_+	transporter	NA	A1IMD5	Streptococcus_phage	75.7	7.8e-141
SQG92580.1|709342_710254_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	2.0e-106
SQG92581.1|710430_711846_-|integrase	integrase	integrase	A5GZ62	Lactococcus_phage	47.4	3.6e-110
SQG92582.1|711962_712328_-	phage protein	NA	Q9T1Z1	Lactococcus_phage	65.7	3.1e-18
SQG92583.1|712354_713116_-	cI-like repressor	NA	X2KUB8	Streptococcus_phage	41.6	5.5e-41
SQG92584.1|713299_713530_+	Cro-like protein	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	64.0	3.6e-20
SQG92585.1|713597_713735_+	phage protein	NA	NA	NA	NA	NA
SQG92586.1|713736_713919_+	phage protein	NA	Q938N3	Temperate_phage	85.2	1.8e-19
SQG92587.1|714018_714270_+	replication protein	NA	A0A060QMU7	Streptococcus_phage	41.5	5.1e-12
SQG92588.1|714418_714808_+	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	8.7e-51
SQG92589.1|714788_715022_+	phage protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
SQG92590.1|715018_715159_+	phage protein	NA	NA	NA	NA	NA
SQG92591.1|715167_715374_+	phage protein	NA	NA	NA	NA	NA
SQG92592.1|715535_716462_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	72.2	1.9e-91
SQG92593.1|716458_716659_+	phage protein	NA	NA	NA	NA	NA
SQG92594.1|716651_717449_+	phage protein	NA	J7KGZ1	Streptococcus_phage	84.5	5.4e-132
SQG92595.1|717458_717626_+	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	53.7	3.9e-08
SQG92596.1|717752_718145_+	phage protein	NA	M1PKQ2	Streptococcus_phage	40.2	3.5e-15
SQG92597.1|718141_718654_+	phage protein	NA	A0A1S5S8V7	Streptococcus_phage	75.6	3.3e-66
SQG92598.1|718640_718832_+	phage protein	NA	A3F626	Streptococcus_phage	100.0	4.6e-13
718709:718725	attR	TGACAAGAGATTGTTTA	NA	NA	NA	NA
SQG92599.1|718828_719098_+	phage protein	NA	Q938M2	Temperate_phage	98.9	1.2e-46
SQG92600.1|719107_719392_+	phage protein	NA	A3F628	Streptococcus_phage	94.7	1.3e-40
SQG92601.1|719381_719744_+|terminase	phage terminase	terminase	Q7Y4J8	Streptococcus_phage	70.3	4.7e-43
SQG92602.1|719747_720230_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	86.9	8.2e-83
SQG92603.1|720322_720844_+	phage protein	NA	C5IUI5	Streptococcus_phage	50.0	9.9e-26
SQG92604.1|720840_721011_+	phage protein	NA	NA	NA	NA	NA
SQG92605.1|721003_721177_+	phage protein	NA	NA	NA	NA	NA
SQG92606.1|721540_721981_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	3.6e-77
SQG92607.1|722657_723824_+	adenine methyltransferase	NA	Q708N6	Streptococcus_phage	53.4	2.7e-124
SQG92608.1|723837_724617_+	methionine adenosyltransferase	NA	NA	NA	NA	NA
SQG92609.1|724658_725054_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92610.1|725043_726435_+	phage protein	NA	A0A1S5SA12	Streptococcus_phage	77.4	1.8e-215
SQG92611.1|726443_727937_+	serine protein kinase	NA	A0A1S5SAF3	Streptococcus_phage	64.5	4.1e-181
SQG92612.1|727881_728802_+	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	A0A1S5S8W2	Streptococcus_phage	69.7	2.0e-114
SQG92613.1|728794_729070_+	phage protein	NA	Q938K9	Temperate_phage	77.3	6.6e-29
SQG92614.1|729200_729779_+	Phage minor structural protein GP20	NA	A0A1S5SAI6	Streptococcus_phage	65.1	8.7e-31
SQG92615.1|729795_730767_+	Uncharacterised protein	NA	Q708M6	Streptococcus_phage	61.9	6.0e-109
SQG92616.1|730780_731146_+	phage protein	NA	NA	NA	NA	NA
SQG92617.1|731186_731717_+	Uncharacterised protein	NA	A0A1S5SAD0	Streptococcus_phage	65.3	4.8e-60
SQG92618.1|731716_732019_+	Uncharacterised protein	NA	A0A1S5S8X2	Streptococcus_phage	48.5	1.6e-20
SQG92619.1|732015_732420_+	phage protein, HK97 gp10 family	NA	A0A1S5SAL3	Streptococcus_phage	70.4	3.9e-46
SQG92620.1|732421_732787_+	Uncharacterised protein	NA	A0A1S5SAQ0	Streptococcus_phage	38.8	2.2e-19
SQG92621.1|732787_733399_+	Uncharacterised protein	NA	A0A1S5S9Y8	Streptococcus_phage	68.3	2.6e-78
SQG92622.1|733402_733831_+	Uncharacterised protein	NA	A0A1S5SAG5	Streptococcus_phage	58.9	2.6e-40
SQG92623.1|733926_734157_+	Uncharacterised protein	NA	A0A1S5S929	Streptococcus_phage	56.2	4.2e-13
SQG92624.1|734143_736222_+|tail	Minor tail protein Gp26	tail	A0A1S5SF15	Streptococcus_phage	47.0	1.4e-59
SQG92625.1|736214_737687_+|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	72.6	7.5e-204
SQG92626.1|737687_741137_+	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	96.1	0.0e+00
SQG92627.1|741141_742998_+	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	72.0	2.3e-250
SQG92628.1|743008_743359_+	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	87.1	1.9e-49
SQG92629.1|743372_743495_+	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	95.0	6.9e-15
SQG92630.1|743507_743831_+	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQG92631.1|743830_744163_+	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	93.6	2.6e-48
SQG92632.1|744164_744929_+	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	95.7	1.2e-144
SQG92633.1|744940_745543_+	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	97.7	1.3e-90
SQG92634.1|745553_746327_+	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQG92635.1|746336_746558_+	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQG92636.1|746557_747220_+	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	86.9	2.0e-103
SQG92637.1|747422_747662_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92638.1|747730_747946_-	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	52.1	3.7e-11
SQG92639.1|747947_748550_-	AP2 domain	NA	A0A096XV31	Lactococcus_phage	31.5	4.4e-09
SQG92640.1|748549_748924_-	protein gp30	NA	NA	NA	NA	NA
SQG92641.1|749050_749407_-	phage protein	NA	NA	NA	NA	NA
SQG92642.1|749408_749882_-	Uncharacterised protein	NA	A3F671	Streptococcus_phage	92.9	1.4e-79
SQG92643.1|749916_750225_-	Uncharacterised protein	NA	A3F672	Streptococcus_phage	80.4	9.9e-42
SQG92644.1|750295_750487_-	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	68.3	3.2e-14
SQG92645.1|750625_750760_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92646.1|750922_751102_+	paratox	NA	A3F673	Streptococcus_phage	78.0	2.0e-18
SQG92647.1|751614_752064_+	ribosome maturation factor rimP	NA	NA	NA	NA	NA
SQG92648.1|752149_753364_+	transcription elongation factor	NA	NA	NA	NA	NA
SQG92649.1|753379_753676_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQG92650.1|753668_753971_+	ribosomal protein in infB 5'region	NA	NA	NA	NA	NA
SQG92651.1|753990_756888_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.0	4.5e-19
>prophage 8
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1103221	1109743	2249230	tRNA,transposase	Streptococcus_phi-m46.1-like_phage(33.33%)	9	NA	NA
SQG92956.1|1103221_1104583_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	89.8	8.4e-234
SQG92957.1|1104795_1104969_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92958.1|1104965_1105790_+	41 kDa protein	NA	A0A286QNA4	Streptococcus_phage	37.6	7.6e-12
SQG92959.1|1105791_1105887_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG92960.1|1105947_1106238_+	C-5 cytosine-specific DNA methylase	NA	A0A1X9I6Y5	Streptococcus_phage	77.1	2.5e-39
SQG92961.1|1106278_1107058_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.0	1.2e-67
SQG92962.1|1107093_1107384_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	56.2	2.6e-20
SQG92963.1|1107962_1108802_+	YaeC family protein	NA	NA	NA	NA	NA
SQG92964.1|1108948_1109743_+	phosphorylase, Pnp/UDP family	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	82.9	5.0e-77
>prophage 9
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1150399	1196218	2249230	protease,tRNA,transposase	Paenibacillus_phage(15.38%)	48	NA	NA
SQG93004.1|1150399_1151374_+|transposase	transposase	transposase	H7BUM7	unidentified_phage	32.8	1.2e-37
SQG93005.1|1151638_1152658_+	maltose operon transcriptional repressor	NA	NA	NA	NA	NA
SQG93006.1|1152776_1154273_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQG93007.1|1154303_1156568_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQG93008.1|1156804_1157359_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	35.6	9.9e-16
SQG93009.1|1157423_1157726_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93010.1|1157920_1158907_+	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQG93011.1|1158982_1159612_+	uridine kinase	NA	NA	NA	NA	NA
SQG93012.1|1159690_1160299_+	glutathione S-transferase	NA	NA	NA	NA	NA
SQG93013.1|1160481_1161399_+	exfoliative toxin	NA	NA	NA	NA	NA
SQG93014.1|1161503_1161680_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQG93015.1|1161812_1162697_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG93016.1|1162784_1164023_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG93017.1|1164015_1164651_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG93018.1|1164665_1165595_+	ribonuclease Z	NA	NA	NA	NA	NA
SQG93019.1|1165594_1166359_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQG93020.1|1166355_1168563_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.3	3.0e-71
SQG93021.1|1168710_1169229_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.7	7.8e-31
SQG93022.1|1169446_1170130_+	DNA replication protein	NA	Q938N2	Temperate_phage	35.6	6.5e-09
SQG93023.1|1170126_1170783_+	endonuclease III	NA	NA	NA	NA	NA
SQG93024.1|1170863_1171550_+	anthranilate synthase component I	NA	NA	NA	NA	NA
SQG93025.1|1171539_1172328_+	NGG1p interacting factor 3 family protein	NA	NA	NA	NA	NA
SQG93026.1|1172345_1173167_+	Zinc transporter ZIP11	NA	NA	NA	NA	NA
SQG93027.1|1173191_1174298_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQG93028.1|1174355_1175225_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
SQG93029.1|1175224_1175818_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	NA	NA	NA	NA
SQG93030.1|1176061_1177105_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.6	2.9e-69
SQG93031.1|1177293_1178019_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG93032.1|1178106_1178298_-|tRNA	Isoleucyl-tRNA synthetase, putative	tRNA	W6LMT3	Streptococcus_phage	59.0	6.4e-15
SQG93033.1|1178493_1178973_+	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
SQG93034.1|1179021_1180203_+	permease	NA	NA	NA	NA	NA
SQG93035.1|1180192_1181440_+	tetra tricopeptide repeat family protein	NA	NA	NA	NA	NA
SQG93036.1|1181502_1183155_-	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	39.0	2.3e-07
SQG93037.1|1183332_1183674_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93038.1|1184417_1185197_-|transposase	ISSdy1, transposase OrfB	transposase	A0A2I7SC85	Paenibacillus_phage	48.3	1.1e-65
SQG93039.1|1185232_1185523_-	Mobile element protein	NA	A0A0C5AJ30	Paenibacillus_phage	53.9	5.9e-20
SQG93040.1|1185692_1185914_+	group II intron-interrupted relaxase ltrB	NA	NA	NA	NA	NA
SQG93041.1|1186033_1186771_+	acid phosphatase, class B	NA	NA	NA	NA	NA
SQG93042.1|1187384_1187897_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93043.1|1187910_1188555_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93044.1|1188778_1189033_+|transposase	DDE transposase	transposase	NA	NA	NA	NA
SQG93045.1|1189011_1190043_+|transposase	DDE transposase	transposase	NA	NA	NA	NA
SQG93046.1|1190505_1191501_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG93047.1|1191518_1192388_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG93048.1|1192384_1193143_+	spermidine/putrescine import ATP-binding protein potA	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	7.7e-11
SQG93049.1|1193354_1195016_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQG93050.1|1195109_1195895_+	acetyl esterase	NA	NA	NA	NA	NA
SQG93051.1|1195924_1196218_+|protease	protease	protease	NA	NA	NA	NA
>prophage 10
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1228068	1267299	2249230	transposase,tRNA,bacteriocin	Paenibacillus_phage(25.0%)	46	NA	NA
SQG93079.1|1228068_1228299_+|bacteriocin	bacteriocin ubericin-A	bacteriocin	NA	NA	NA	NA
SQG93080.1|1228298_1228595_+	putative sakacin P immunity protein	NA	NA	NA	NA	NA
SQG93081.1|1228784_1229954_+	Predicted lipase	NA	NA	NA	NA	NA
SQG93082.1|1230064_1231084_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG93083.1|1231290_1231716_+	PTS system mannose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG93084.1|1231735_1232227_+	PTS system mannose/fructose family transporter subunit IIB	NA	NA	NA	NA	NA
SQG93085.1|1232243_1233053_+	PTS system, mannose-specific IIC component	NA	NA	NA	NA	NA
SQG93086.1|1233049_1233877_+	phospotransferase system (PTS), enzyme II component D	NA	NA	NA	NA	NA
SQG93087.1|1234022_1235672_+	two-component sensor kinase YesM	NA	NA	NA	NA	NA
SQG93088.1|1235675_1236470_+	response regulatory protein	NA	NA	NA	NA	NA
SQG93089.1|1236456_1237506_+	iron(III)-binding protein	NA	NA	NA	NA	NA
SQG93090.1|1237601_1238108_+	Fe-S-cluster oxidoreductase	NA	NA	NA	NA	NA
SQG93091.1|1238226_1238901_+	HAD superfamily hydrolase	NA	A0A1D8KNV9	Synechococcus_phage	27.0	1.5e-10
SQG93092.1|1238916_1239483_+	acetyltransferase	NA	NA	NA	NA	NA
SQG93093.1|1239700_1240372_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93094.1|1240419_1241127_+	5'-nucleotidase yjjG	NA	NA	NA	NA	NA
SQG93095.1|1241204_1242581_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQG93096.1|1242636_1242786_+	phosphatase	NA	NA	NA	NA	NA
SQG93097.1|1242915_1244700_+	excinuclease ABC subunit C	NA	NA	NA	NA	NA
SQG93098.1|1244761_1245169_-	pyruvate oxidase	NA	NA	NA	NA	NA
SQG93099.1|1245196_1245376_-	pyruvate oxidase	NA	NA	NA	NA	NA
SQG93100.1|1245339_1246059_-	pyruvate oxidase	NA	NA	NA	NA	NA
SQG93101.1|1246066_1246411_-	pyruvate oxidase	NA	NA	NA	NA	NA
SQG93102.1|1246723_1247326_+	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
SQG93103.1|1247503_1248913_+	dipeptidase	NA	NA	NA	NA	NA
SQG93104.1|1248980_1250357_-|tRNA	tRNA modification GTPase	tRNA	NA	NA	NA	NA
SQG93105.1|1250498_1251182_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQG93106.1|1251260_1252472_+	phosphopentomutase	NA	NA	NA	NA	NA
SQG93107.1|1252490_1252931_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
SQG93108.1|1252914_1253724_+	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	8.7e-53
SQG93109.1|1254276_1254990_+	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQG93110.1|1254982_1255753_+	attenuator of transcription, LytR family regulator	NA	NA	NA	NA	NA
SQG93111.1|1255834_1256752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQG93112.1|1256981_1257524_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93113.1|1257735_1258428_+	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQG93114.1|1258488_1259100_+	orotate phosphoribosyl transferase	NA	Q58MW1	Prochlorococcus_phage	34.1	1.3e-05
SQG93115.1|1259158_1259905_+	acetyl transferase GNAT family	NA	NA	NA	NA	NA
SQG93116.1|1259975_1260491_+|transposase	transposase IS861 orfA	transposase	NA	NA	NA	NA
SQG93117.1|1260526_1261324_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	51.0	2.5e-60
SQG93118.1|1261502_1262957_+	amidase	NA	NA	NA	NA	NA
SQG93119.1|1263075_1263939_+	cystine-binding protein	NA	NA	NA	NA	NA
SQG93120.1|1263967_1264618_+	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQG93121.1|1264603_1265572_-|transposase	transposase	transposase	H7BWC8	unidentified_phage	32.3	7.0e-33
SQG93122.1|1265796_1266141_+	Protein virD4	NA	NA	NA	NA	NA
SQG93123.1|1266193_1266484_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	55.1	1.0e-19
SQG93124.1|1266519_1267299_+|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.0	1.2e-67
>prophage 11
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1387144	1449817	2249230	tRNA,transposase	Bacillus_phage(22.73%)	60	NA	NA
SQG93244.1|1387144_1388491_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
SQG93245.1|1388667_1390065_+	Na+ transporting oxaloacetate decarboxylase alpha chain	NA	NA	NA	NA	NA
SQG93246.1|1390202_1390721_-	(citrate [pro-3S]-lyase)-ligase	NA	NA	NA	NA	NA
SQG93247.1|1390877_1391255_-	(citrate [pro-3S]-lyase)-ligase	NA	NA	NA	NA	NA
SQG93248.1|1391521_1392004_-	PnkB-like serine/threonine kinase protein	NA	NA	NA	NA	NA
SQG93249.1|1392169_1393135_+	Nisin-resistance protein	NA	NA	NA	NA	NA
SQG93250.1|1393171_1393924_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	3.1e-28
SQG93251.1|1393925_1395881_+	bacitracin export permease protein	NA	NA	NA	NA	NA
SQG93252.1|1395924_1396590_+	two-component response regulator	NA	NA	NA	NA	NA
SQG93253.1|1396586_1397534_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQG93254.1|1397592_1398135_-	heptaprenyl diphosphate synthase protein	NA	NA	NA	NA	NA
SQG93255.1|1398294_1400187_+	NADH dehydrogenase FAD-containing subunit	NA	NA	NA	NA	NA
SQG93256.1|1400265_1401264_+	geranylgeranyl pyrophosphate synthase	NA	NA	NA	NA	NA
SQG93257.1|1401354_1401861_+	major membrane immunogen, membrane-anchored lipoprotein	NA	NA	NA	NA	NA
SQG93258.1|1401931_1402984_+	membrane-associated lipoprotein	NA	NA	NA	NA	NA
SQG93259.1|1402973_1403924_+	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA	NA
SQG93260.1|1403994_1404435_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG93261.1|1404511_1405582_-	site-specific tyrosine recombinase XerS	NA	NA	NA	NA	NA
SQG93262.1|1406237_1406705_+	peptidoglycan branched peptide synthesis protein	NA	NA	NA	NA	NA
SQG93263.1|1406822_1407482_+	peptidoglycan branched peptide synthesis protein	NA	NA	NA	NA	NA
SQG93264.1|1407512_1407935_-	Mannose-6-phosphate isomerase	NA	Q2I8C5	Bacillus_phage	61.8	7.5e-40
SQG93265.1|1408059_1409130_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	9.7e-44
SQG93266.1|1409113_1409647_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	38.7	4.7e-23
SQG93267.1|1409801_1410827_-	oxidoreductase	NA	NA	NA	NA	NA
SQG93268.1|1411001_1411694_+	phage transcriptional repressor	NA	E8ZDN4	Streptococcus_phage	52.1	1.3e-62
SQG93269.1|1411840_1412896_-	ferric reductase	NA	NA	NA	NA	NA
SQG93270.1|1412856_1413033_-	ferric reductase	NA	NA	NA	NA	NA
SQG93271.1|1413328_1414891_-	signal recognition particle protein	NA	NA	NA	NA	NA
SQG93272.1|1414905_1415247_-	DNA-binding protein	NA	NA	NA	NA	NA
SQG93273.1|1415347_1416046_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG93274.1|1416125_1417568_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93275.1|1417734_1419297_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	30.3	1.9e-19
SQG93276.1|1419432_1420044_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	95.0	8.7e-98
SQG93277.1|1419994_1420933_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	89.6	5.6e-144
SQG93278.1|1421092_1422256_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
SQG93279.1|1422356_1423580_-	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase / UDP-N-acetylmuramoylpentapeptide-lysine	NA	NA	NA	NA	NA
SQG93280.1|1423737_1424694_-|transposase	putative transposase	transposase	H7BVY4	unidentified_phage	32.2	1.4e-33
SQG93281.1|1424709_1425282_-|transposase	ISSdy1, transposase OrfB	transposase	A0A2I7SC85	Paenibacillus_phage	50.5	1.4e-52
SQG93282.1|1425524_1425815_-	Mobile element protein	NA	A0A0C5AJ30	Paenibacillus_phage	53.9	1.3e-19
SQG93283.1|1426416_1428045_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQG93284.1|1428157_1429135_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQG93285.1|1429131_1429953_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQG93286.1|1429964_1430768_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	A0A2R8FG22	Brazilian_cedratvirus	26.6	2.7e-06
SQG93287.1|1430751_1431378_+	Dipeptide transport ATP-binding protein dppF	NA	G3M9Y6	Bacillus_virus	27.0	1.6e-14
SQG93288.1|1431458_1431659_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQG93289.1|1431826_1434298_-	histidine triad protein	NA	NA	NA	NA	NA
SQG93290.1|1434310_1435231_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQG93291.1|1435466_1439021_-	C5A peptidase	NA	A0A218KC60	Bacillus_phage	39.4	7.8e-05
SQG93292.1|1439477_1440167_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93293.1|1440499_1440751_-	immunogenic protein	NA	NA	NA	NA	NA
SQG93294.1|1440828_1442421_-	immunogenic secreted protein	NA	A8AST1	Listeria_phage	39.8	8.9e-09
SQG93295.1|1442522_1443911_-	two-component system histidine kinase	NA	A0A1V0SGX0	Hokovirus	28.7	1.6e-09
SQG93296.1|1443907_1444561_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	34.4	2.7e-28
SQG93297.1|1444654_1445872_-	ABC transporter permease	NA	NA	NA	NA	NA
SQG93298.1|1445884_1446559_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	5.4e-32
SQG93299.1|1446545_1447808_-	ATP-binding cassette transporter-like protein	NA	NA	NA	NA	NA
SQG93300.1|1448222_1448507_-	ABC transporter	NA	NA	NA	NA	NA
SQG93301.1|1448779_1449070_+	Mobile element protein	NA	A0A0C5AJ30	Paenibacillus_phage	53.9	5.9e-20
SQG93302.1|1449123_1449546_+|transposase	ISSdy1, transposase OrfB	transposase	A0A0C5AEB1	Paenibacillus_phage	48.0	1.4e-25
SQG93303.1|1449487_1449817_+|transposase	ISSdy1, transposase OrfB	transposase	A0A2I7SC85	Paenibacillus_phage	51.5	1.2e-21
>prophage 12
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1516635	1524435	2249230	integrase,transposase	Streptococcus_phage(50.0%)	7	1519663:1519676	1532036:1532049
SQG93375.1|1516635_1517958_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	55.2	3.9e-135
SQG93376.1|1518117_1519758_-	mercuric reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.8	3.7e-50
1519663:1519676	attL	AATATTTTTAGCAC	NA	NA	NA	NA
SQG93377.1|1519786_1520179_-	mercuric resistance operon regulatory protein MerR	NA	NA	NA	NA	NA
SQG93378.1|1520826_1521168_+|integrase	integrase catalytic subunit	integrase	A0A0C5AEA5	Paenibacillus_phage	40.6	1.1e-14
SQG93379.1|1521442_1523572_-	cation transporter E1-E2 family ATPase	NA	E4ZFI9	Streptococcus_phage	100.0	0.0e+00
SQG93380.1|1523564_1523933_-	cadmium efflux system accessory protein	NA	E4ZFI8	Streptococcus_phage	100.0	1.4e-63
SQG93381.1|1524135_1524435_+	Uncharacterised protein	NA	Q6DMX6	Streptococcus_phage	96.0	5.3e-48
1532036:1532049	attR	AATATTTTTAGCAC	NA	NA	NA	NA
>prophage 13
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1629497	1671707	2249230	terminase,integrase,transposase,tail	Streptococcus_phage(75.47%)	64	1640488:1640502	1673141:1673155
SQG93476.1|1629497_1630757_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	9.3e-62
SQG93477.1|1630772_1631294_-	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQG93478.1|1631572_1632187_+	membrane-associated alkaline phosphatase	NA	M1Q152	Streptococcus_phage	37.2	2.9e-24
SQG93479.1|1632313_1633207_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQG93480.1|1633196_1633655_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SQG93481.1|1633651_1634566_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.8	1.3e-07
SQG93482.1|1635034_1636255_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	61.8	1.1e-165
SQG93483.1|1636251_1636365_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	91.4	2.6e-08
SQG93484.1|1636373_1636601_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQG93485.1|1636597_1636870_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQG93486.1|1636881_1637502_-	phage protein	NA	A3F662	Streptococcus_phage	88.3	1.4e-79
SQG93487.1|1637504_1637690_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93488.1|1637703_1639416_-	gp58-like family protein	NA	M1PRW0	Streptococcus_phage	51.6	5.5e-41
SQG93489.1|1639424_1640075_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	76.5	2.4e-90
SQG93490.1|1640074_1640773_-	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	77.4	2.4e-19
1640488:1640502	attL	CATCATCTAAGCTAA	NA	NA	NA	NA
SQG93491.1|1640772_1642737_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	49.2	7.4e-98
SQG93492.1|1642733_1643429_-	phage protein	NA	M1Q167	Streptococcus_phage	39.5	2.2e-41
SQG93493.1|1643425_1645267_-|tail	minor tail protein GP26	tail	A0A1P8BKD8	Lactococcus_phage	53.0	1.2e-81
SQG93494.1|1645444_1646005_-	endodeoxyribonuclease	NA	Q38127	Lactococcus_phage	79.0	8.9e-81
SQG93495.1|1646091_1646682_-	phage protein	NA	Q38126	Lactococcus_phage	57.4	1.4e-47
SQG93496.1|1646681_1647053_-	phage protein	NA	M1PFF5	Streptococcus_phage	61.0	1.2e-33
SQG93497.1|1647067_1647331_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	2.9e-18
SQG93498.1|1647340_1647925_-|tail	major tail protein	tail	M1NS84	Streptococcus_phage	65.2	1.4e-60
SQG93499.1|1647936_1648272_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQG93500.1|1648272_1648509_-	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	67.9	6.7e-22
SQG93501.1|1648501_1648840_-	phage protein	NA	M1PFF8	Streptococcus_phage	70.3	5.8e-43
SQG93502.1|1648799_1649222_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	71.5	1.3e-47
SQG93503.1|1649242_1649476_-	phage protein	NA	M1PL08	Streptococcus_phage	56.8	3.9e-14
SQG93504.1|1649477_1650371_-	phage associated structural protein	NA	M1PFL0	Streptococcus_phage	70.9	4.4e-122
SQG93505.1|1650388_1650829_-	phage protein	NA	A0A0B5A7G6	Streptococcus_phage	60.4	1.9e-38
SQG93506.1|1650908_1652324_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
SQG93507.1|1652387_1652657_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	74.4	2.8e-24
SQG93508.1|1652718_1652916_-	Uncharacterised protein	NA	S6C469	Thermus_phage	46.2	1.1e-06
SQG93509.1|1652915_1654127_-	phage protein	NA	Q7Y4I9	Streptococcus_phage	66.8	3.7e-116
SQG93510.1|1654119_1655388_-	structural phage protein	NA	A0A1X9I693	Streptococcus_phage	76.7	2.2e-191
SQG93511.1|1655384_1655741_-	phage protein	NA	M1PRL3	Streptococcus_phage	60.0	1.1e-07
SQG93512.1|1656340_1656760_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	82.0	3.5e-58
SQG93513.1|1656833_1657085_-	phage protein	NA	M1PF60	Streptococcus_phage	57.8	4.8e-18
SQG93514.1|1657081_1657237_-	phage protein	NA	NA	NA	NA	NA
SQG93515.1|1657233_1657542_-	phage protein	NA	A1EAD7	Streptococcus_phage	80.2	1.7e-33
SQG93516.1|1657538_1657694_-	phage protein	NA	A1EAD6	Streptococcus_phage	82.4	1.1e-17
SQG93517.1|1657665_1657842_-	phage protein	NA	A1EAD5	Streptococcus_phage	98.1	7.2e-21
SQG93518.1|1657834_1658224_-	phage protein	NA	A1EAD4	Streptococcus_phage	85.3	7.8e-60
SQG93519.1|1658528_1659860_-	phage protein	NA	X2KU14	Streptococcus_phage	80.1	1.2e-208
SQG93520.1|1659856_1660678_-	replication protein	NA	A0A1S5SDK7	Streptococcus_phage	85.3	8.0e-139
SQG93521.1|1660697_1661231_-	Uncharacterised protein	NA	B3GVY6	Streptococcus_phage	46.9	3.8e-33
SQG93522.1|1661249_1662011_-	Uncharacterised protein	NA	B3GVY5	Streptococcus_phage	75.9	4.7e-101
SQG93523.1|1662011_1663202_-	putative helicase	NA	A0A1S5SCR2	Streptococcus_phage	79.3	2.6e-186
SQG93524.1|1663164_1663650_-	phage protein	NA	X2KUD4	Streptococcus_phage	80.1	1.2e-73
SQG93525.1|1663646_1664015_-	phage protein	NA	A0A1S5SB89	Streptococcus_phage	58.8	4.7e-30
SQG93526.1|1664011_1664491_-	phage protein	NA	A0A1S5SA85	Streptococcus_phage	89.3	4.2e-71
SQG93527.1|1664502_1664646_-	Uncharacterised protein	NA	A0A1X9I663	Streptococcus_phage	61.4	1.1e-08
SQG93528.1|1664645_1664786_-	phage protein	NA	NA	NA	NA	NA
SQG93529.1|1664801_1665068_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SQG93530.1|1665145_1665337_-	phage DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	71.4	2.1e-18
SQG93531.1|1665631_1665994_+	phage DNA-binding protein	NA	A0A1S5S9V0	Streptococcus_phage	65.2	6.2e-35
SQG93532.1|1666017_1666398_+	cI-like repressor	NA	A0A1S5S9U5	Streptococcus_phage	62.4	8.0e-41
SQG93533.1|1666399_1666834_+	prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQG93534.1|1666961_1668065_+|integrase	putative phage integrase	integrase	Q938N9	Temperate_phage	42.5	2.2e-67
SQG93535.1|1668149_1668443_-	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQG93536.1|1668470_1668797_-	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
SQG93537.1|1668808_1669123_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQG93538.1|1669425_1670400_-|transposase	transposase	transposase	H7BUM7	unidentified_phage	33.1	9.5e-38
SQG93539.1|1670513_1671707_-	Capsule biosynthesis protein capA	NA	A0A2H4JC87	uncultured_Caudovirales_phage	31.2	5.8e-37
1673141:1673155	attR	CATCATCTAAGCTAA	NA	NA	NA	NA
>prophage 14
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1761037	1840478	2249230	head,portal,tRNA,transposase,bacteriocin,terminase,integrase,tail	Streptococcus_phage(60.71%)	102	1770973:1770988	1840411:1840426
SQG93616.1|1761037_1761199_-|bacteriocin	bacteriocin-like prepropeptide	bacteriocin	NA	NA	NA	NA
SQG93617.1|1761899_1763207_-	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.3e-239
SQG93618.1|1763431_1763887_+	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	38.7	5.1e-18
SQG93619.1|1763913_1764582_-	phosphoserine phosphatase	NA	NA	NA	NA	NA
SQG93620.1|1764714_1766439_-	septation ring formation regulator	NA	NA	NA	NA	NA
SQG93621.1|1766788_1768741_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.9	8.9e-144
SQG93622.1|1768741_1769311_-	DNA gyrase subunit B	NA	NA	NA	NA	NA
SQG93623.1|1769403_1770615_-	Cell division protein ftsW	NA	NA	NA	NA	NA
1770973:1770988	attL	AAGAGGTCTCATTTTC	NA	NA	NA	NA
SQG93624.1|1771236_1771584_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQG93625.1|1771698_1772961_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	1.9e-94
SQG93626.1|1772953_1773238_-	chorismate mutase	NA	NA	NA	NA	NA
SQG93627.1|1773413_1773863_-	flavodoxin	NA	NA	NA	NA	NA
SQG93628.1|1774029_1775163_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG93629.1|1775208_1776276_-	adenosine deaminase	NA	NA	NA	NA	NA
SQG93630.1|1776526_1777306_+	glutathione S-transferase	NA	NA	NA	NA	NA
SQG93631.1|1777390_1777822_+	acetyltransferase	NA	NA	NA	NA	NA
SQG93632.1|1777827_1778769_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
SQG93633.1|1778871_1779858_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	33.8	2.5e-38
SQG93634.1|1780006_1780321_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQG93635.1|1780531_1780936_-	PTS system mannose/fructose EIIAB component	NA	NA	NA	NA	NA
SQG93636.1|1780935_1781751_-	PTS system, mannose/fructose/N -acetylgalactosamine-specific component IID	NA	NA	NA	NA	NA
SQG93637.1|1781737_1782640_-	PTS system mannose/fructose permease IIC component	NA	NA	NA	NA	NA
SQG93638.1|1782682_1783168_-	PTS system mannose/fructose transporter subunit IIB	NA	NA	NA	NA	NA
SQG93639.1|1783164_1784949_-	beta-galactosidase	NA	NA	NA	NA	NA
SQG93640.1|1785069_1785783_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG93641.1|1785845_1786841_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
SQG93642.1|1786850_1788029_-	tagatose-6-phosphate aldose/ketose isomerase	NA	NA	NA	NA	NA
SQG93643.1|1788048_1788771_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG93644.1|1788928_1790476_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQG93645.1|1790627_1792046_-	dipeptidase	NA	NA	NA	NA	NA
SQG93646.1|1792319_1792559_+	Phage protein	NA	NA	NA	NA	NA
SQG93647.1|1792622_1792979_+	phage protein	NA	NA	NA	NA	NA
SQG93648.1|1793105_1793480_+	protein gp30	NA	NA	NA	NA	NA
SQG93649.1|1793479_1794082_+	AP2 domain	NA	A0A096XV31	Lactococcus_phage	31.5	3.4e-09
SQG93650.1|1794083_1794299_+	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	52.1	3.7e-11
SQG93651.1|1794367_1794607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93652.1|1794810_1795563_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	98.8	1.2e-144
SQG93653.1|1795564_1795897_-	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	100.0	5.7e-51
SQG93654.1|1795898_1796219_-	Uncharacterised protein	NA	A3F663	Streptococcus_phage	100.0	7.1e-51
SQG93655.1|1796229_1796841_-	phage protein	NA	Q938J7	Temperate_phage	92.1	3.6e-83
SQG93656.1|1796843_1797272_-	phage protein	NA	A3F661	Streptococcus_phage	97.9	7.0e-70
SQG93657.1|1797284_1799192_-	phage infection protein	NA	Q938J9	Temperate_phage	55.2	1.5e-87
SQG93658.1|1799200_1799854_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	71.0	1.0e-80
SQG93659.1|1799853_1800639_-	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	74.2	3.9e-18
SQG93660.1|1800635_1802744_-	phage protein	NA	A3F656	Streptococcus_phage	42.6	1.0e-129
SQG93661.1|1802740_1803511_-|tail	phage tail protein	tail	A1EAB1	Streptococcus_phage	43.9	2.0e-54
SQG93662.1|1803510_1806510_-	phage protein	NA	J7KDT4	Streptococcus_phage	36.0	6.9e-55
SQG93663.1|1806519_1806711_-	Uncharacterised protein	NA	A1EAF6	Streptococcus_phage	54.7	3.0e-12
SQG93664.1|1806848_1807217_-	Phage protein	NA	NA	NA	NA	NA
SQG93665.1|1807229_1807790_-|tail	major tail protein	tail	A1EAF4	Streptococcus_phage	46.6	3.5e-37
SQG93666.1|1807790_1808177_-	phage protein	NA	NA	NA	NA	NA
SQG93667.1|1808173_1808530_-	phage protein, HK97 gp10 family	NA	A7J2A0	Streptococcus_phage	29.2	4.4e-09
SQG93668.1|1808529_1808826_-	phage protein	NA	NA	NA	NA	NA
SQG93669.1|1808822_1809176_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	52.1	3.0e-26
SQG93670.1|1809189_1809432_-	phage protein	NA	NA	NA	NA	NA
SQG93671.1|1809441_1810515_-|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	57.1	8.1e-107
SQG93672.1|1810517_1810898_-	structural protein	NA	W6LM71	Streptococcus_phage	34.6	8.0e-09
SQG93673.1|1810907_1811438_-	phage protein	NA	E8ZDF3	Streptococcus_phage	42.8	7.5e-13
SQG93674.1|1811668_1811938_-	phage protein	NA	Q7Y4I7	Streptococcus_phage	79.0	6.9e-31
SQG93675.1|1811939_1812209_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.3e-32
SQG93676.1|1812201_1812381_-	phage protein	NA	NA	NA	NA	NA
SQG93677.1|1812395_1813310_-	Phage Mu protein F like protein	NA	A1EAE3	Streptococcus_phage	49.7	5.9e-74
SQG93678.1|1813290_1814781_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	3.7e-142
SQG93679.1|1814792_1816034_-|terminase	Phage terminase, large subunit	terminase	W6LLG2	Streptococcus_phage	79.7	1.7e-193
SQG93680.1|1816020_1816353_-|terminase	Phage terminase, small subunit	terminase	U6E976	Streptococcus_phage	76.4	6.5e-39
SQG93681.1|1817128_1817569_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	3.6e-77
SQG93682.1|1817931_1818267_-	phage protein	NA	NA	NA	NA	NA
SQG93683.1|1818263_1818788_-	phage protein	NA	C5IUI5	Streptococcus_phage	37.8	1.8e-14
SQG93684.1|1818777_1819389_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	36.1	3.2e-31
SQG93685.1|1819459_1820098_-	modification methylase	NA	A0A140HLV8	Bacillus_phage	64.5	1.0e-64
SQG93686.1|1820100_1820385_-	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	1.1e-39
SQG93687.1|1820381_1820894_-	phage protein	NA	A3F627	Streptococcus_phage	65.9	1.4e-37
SQG93688.1|1820896_1821121_-	phage associated protein	NA	NA	NA	NA	NA
SQG93689.1|1821117_1821513_-	phage protein	NA	Q5YA86	Bacillus_phage	59.5	4.8e-41
SQG93690.1|1821505_1821688_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93691.1|1821978_1824222_-	ATPase	NA	Q5YA88	Bacillus_phage	64.5	3.4e-288
SQG93692.1|1824211_1824841_-	AP2 domain protein	NA	A0A2R3ZXW2	Staphylococcus_phage	38.9	1.2e-38
SQG93693.1|1824850_1826434_-	DNA/RNA helicase	NA	A0A097BY72	Enterococcus_phage	77.2	7.5e-234
SQG93694.1|1826433_1827069_-	phage protein	NA	A0A097BY29	Enterococcus_phage	46.7	3.3e-31
SQG93695.1|1827090_1827825_-	phage protein	NA	Q0R597	Streptococcus_phage	60.1	7.3e-75
SQG93696.1|1827826_1828249_-	phage protein	NA	M1I9V9	Streptococcus_phage	63.4	1.6e-37
SQG93697.1|1828288_1829383_-	phage protein	NA	A0A0K2CZH1	Paenibacillus_phage	52.1	1.4e-101
SQG93698.1|1829398_1830685_-	chromosome segregation ATPases	NA	A0A097BY67	Enterococcus_phage	66.3	2.0e-152
SQG93699.1|1830668_1830914_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93700.1|1830915_1831134_-	phage protein	NA	NA	NA	NA	NA
SQG93701.1|1831143_1831284_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	86.7	6.1e-15
SQG93702.1|1831280_1831556_-	phage protein	NA	A7J272	Streptococcus_phage	97.8	1.6e-46
SQG93703.1|1831613_1831790_-	phage protein	NA	NA	NA	NA	NA
SQG93704.1|1831929_1832148_+	Uncharacterised protein	NA	A0A141E1D0	Streptococcus_phage	39.1	4.7e-06
SQG93705.1|1832133_1832265_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93706.1|1832283_1832490_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93707.1|1832636_1832852_-	XRE family transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
SQG93708.1|1832907_1833687_+	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
SQG93709.1|1833622_1833787_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93710.1|1833820_1833979_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	90.4	5.8e-22
SQG93711.1|1834342_1835095_+	Repressor protein	NA	J7KJ52	Streptococcus_phage	90.4	9.3e-126
SQG93712.1|1835132_1835813_+	Uncharacterised protein	NA	A0A097PAS7	Streptococcus_pyogenes_phage	85.7	2.0e-74
SQG93713.1|1835946_1837026_+|integrase	integrase	integrase	A7J266	Streptococcus_phage	85.8	5.4e-175
SQG93714.1|1837224_1837860_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG93715.1|1837859_1838651_-	phosphotransferase	NA	NA	NA	NA	NA
SQG93716.1|1838715_1839750_-	ABC transporter	NA	NA	NA	NA	NA
SQG93717.1|1839752_1840478_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.8e-25
1840411:1840426	attR	GAAAATGAGACCTCTT	NA	NA	NA	NA
>prophage 15
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	1938731	1992774	2249230	protease,tRNA,transposase,integrase	Bacillus_phage(25.0%)	60	1970135:1970151	1986256:1986272
SQG93809.1|1938731_1939040_-|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG93810.1|1939196_1940096_+	ribonuclease HIII	NA	NA	NA	NA	NA
SQG93811.1|1940117_1940711_+	signal peptidase I	NA	NA	NA	NA	NA
SQG93812.1|1940770_1943224_+	Exodeoxyribonuclease V alpha chain	NA	A0A0K2FLP8	Brevibacillus_phage	27.0	1.3e-59
SQG93813.1|1943314_1943803_+	membrane protein	NA	NA	NA	NA	NA
SQG93814.1|1943891_1944989_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQG93815.1|1945197_1947525_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	33.4	7.1e-116
SQG93816.1|1947629_1948082_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG93817.1|1948205_1950113_-	alpha amylase	NA	NA	NA	NA	NA
SQG93818.1|1950199_1951561_-	ABC-type sugar transport system, periplasmic component	NA	NA	NA	NA	NA
SQG93819.1|1951601_1951772_-	ABC-type sugar transport system, periplasmic component	NA	NA	NA	NA	NA
SQG93820.1|1951827_1952178_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93821.1|1952178_1952490_-	Predicted integral membrane protein	NA	NA	NA	NA	NA
SQG93822.1|1952501_1953401_-	ABC transporter permease ytcP	NA	NA	NA	NA	NA
SQG93823.1|1953413_1954352_-	polysaccharide ABC transporter permease	NA	NA	NA	NA	NA
SQG93824.1|1954958_1955990_+	regulatory protein	NA	NA	NA	NA	NA
SQG93825.1|1956101_1957037_-	beta-lactamase family protein	NA	NA	NA	NA	NA
SQG93826.1|1957033_1957786_-	C3-degrading proteinase	NA	NA	NA	NA	NA
SQG93827.1|1958011_1958953_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG93828.1|1959056_1959905_-	Aquaporin-4	NA	NA	NA	NA	NA
SQG93829.1|1960031_1962314_+	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
SQG93830.1|1962386_1962779_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
SQG93831.1|1962948_1963170_-	helix-turn-helix family protein	NA	U5U3X7	Lactobacillus_phage	44.1	7.4e-07
SQG93832.1|1963339_1963714_+	Transcriptional regulator	NA	A0A097BY95	Leuconostoc_phage	53.7	4.9e-19
SQG93833.1|1963964_1964567_-	Chromosome assembly-related protein	NA	NA	NA	NA	NA
SQG93834.1|1964702_1965848_-	sensor histidine kinase	NA	NA	NA	NA	NA
SQG93835.1|1966054_1966699_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQG93836.1|1967010_1968039_-	histidine kinase protein	NA	A0A1V0SGX0	Hokovirus	26.1	6.5e-13
SQG93837.1|1968040_1968727_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.3	1.2e-31
SQG93838.1|1968849_1969239_-	exported protein	NA	NA	NA	NA	NA
SQG93839.1|1969433_1969946_-	GNAT family acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	40.9	8.8e-27
1970135:1970151	attL	TTATGATGAATATGCAA	NA	NA	NA	NA
SQG93840.1|1970400_1971162_-	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
SQG93841.1|1971158_1972061_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	1.4e-30
SQG93842.1|1972057_1972264_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93843.1|1972253_1973333_-	Cro/CI family transcriptional regulator	NA	NA	NA	NA	NA
SQG93844.1|1973630_1974245_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG93845.1|1974332_1975112_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.0	1.2e-67
SQG93846.1|1975147_1975438_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	56.2	2.6e-20
SQG93847.1|1975490_1975967_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQG93848.1|1976125_1976263_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93849.1|1976633_1977779_-	restriction enzyme BgcI subunit beta	NA	NA	NA	NA	NA
SQG93850.1|1977799_1979845_-	restriction enzyme BgcI subunit alpha	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	34.9	5.7e-77
SQG93851.1|1979969_1981136_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93852.1|1981417_1981867_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93853.1|1982049_1982370_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93854.1|1982369_1983455_+	FtsK/SpoIIIE family	NA	NA	NA	NA	NA
SQG93855.1|1983454_1984066_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93856.1|1984200_1984797_+	replication protein	NA	NA	NA	NA	NA
SQG93857.1|1984789_1985044_+	hyptothetic protein	NA	NA	NA	NA	NA
SQG93858.1|1985040_1985541_+|integrase	integrase	integrase	NA	NA	NA	NA
SQG93859.1|1985518_1985875_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	33.3	3.9e-05
SQG93860.1|1985975_1986179_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	48.2	4.7e-08
SQG93861.1|1986257_1986557_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
1986256:1986272	attR	TTATGATGAATATGCAA	NA	NA	NA	NA
SQG93862.1|1986613_1987351_-	transcriptional regulator, MerR family	NA	NA	NA	NA	NA
SQG93863.1|1987503_1988091_-	DNA polymerase III subunit epsilon	NA	A0A0A8WJ41	Clostridium_phage	28.6	1.2e-11
SQG93864.1|1988138_1988669_-	DNA-binding protein	NA	NA	NA	NA	NA
SQG93865.1|1989327_1990503_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	tRNA	A0A2H4PQX1	Staphylococcus_phage	54.2	2.5e-16
SQG93866.1|1990562_1990811_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93867.1|1991158_1991428_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQG93868.1|1991757_1992774_-|protease	metalloendopeptidase, glycoprotease family protein	protease	A0A0R6PI74	Moraxella_phage	42.5	7.3e-57
>prophage 16
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	2039411	2098926	2249230	tRNA,transposase	Bacillus_phage(30.77%)	57	NA	NA
SQG93915.1|2039411_2040860_-|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG93916.1|2040992_2042261_-	lantibiotic efflux protein	NA	NA	NA	NA	NA
SQG93917.1|2042355_2043057_-	membrane protein	NA	NA	NA	NA	NA
SQG93918.1|2043060_2043507_-	LytR/AlgR family response regulator	NA	NA	NA	NA	NA
SQG93919.1|2043735_2044452_-	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQG93920.1|2044587_2045082_-	carbonic anhydrase	NA	NA	NA	NA	NA
SQG93921.1|2045271_2046534_-	DNA repair protein RadA	NA	NA	NA	NA	NA
SQG93922.1|2046715_2047162_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q332E8	Clostridium_botulinum_C_phage	52.7	5.9e-35
SQG93923.1|2047269_2048037_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG93924.1|2048156_2049941_-	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	28.6	8.6e-45
SQG93925.1|2049940_2051650_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	3.1e-36
SQG93926.1|2051642_2052092_-	HTH-type transcriptional regulator ywhA	NA	NA	NA	NA	NA
SQG93927.1|2052292_2053309_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG93928.1|2053340_2054243_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	51.5	2.1e-76
SQG93929.1|2054457_2055048_+	integral membrane protein	NA	NA	NA	NA	NA
SQG93930.1|2055224_2055899_-	integral membrane protein	NA	NA	NA	NA	NA
SQG93931.1|2055895_2056480_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQG93932.1|2056963_2059273_-	fibronectin binding protein	NA	NA	NA	NA	NA
SQG93933.1|2059596_2060625_+|transposase	transposase	transposase	H7BUM7	unidentified_phage	33.0	2.8e-40
SQG93934.1|2060896_2062402_+	transcriptional regulator	NA	NA	NA	NA	NA
SQG93935.1|2062515_2063640_-	Uncharacterized protein conserved in bacteria (DUF2133)	NA	NA	NA	NA	NA
SQG93936.1|2063675_2064173_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93937.1|2064400_2064526_+|transposase	truncated IS1239 transposase	transposase	NA	NA	NA	NA
SQG93938.1|2064696_2065389_+|transposase	putative transposase	transposase	H7BW61	unidentified_phage	37.5	2.3e-30
SQG93939.1|2065520_2066870_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQG93940.1|2067109_2067691_-	Thiol-disulfide oxidoreductase resA	NA	NA	NA	NA	NA
SQG93941.1|2067805_2068426_-	membrane protein	NA	NA	NA	NA	NA
SQG93942.1|2068510_2069215_-	Exotoxin type G	NA	NA	NA	NA	NA
SQG93943.1|2069638_2070859_+	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
SQG93944.1|2070960_2071488_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQG93945.1|2071487_2072267_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQG93946.1|2072406_2072946_-	biotin transporter	NA	NA	NA	NA	NA
SQG93947.1|2072949_2073261_-	Helper of Tim protein 13	NA	NA	NA	NA	NA
SQG93948.1|2073465_2074608_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	1.7e-86
SQG93949.1|2074827_2075694_+	integral membrane protein	NA	NA	NA	NA	NA
SQG93950.1|2075814_2076282_-	ferric uptake regulator family protein	NA	NA	NA	NA	NA
SQG93951.1|2076348_2076789_-	CoA binding protein	NA	NA	NA	NA	NA
SQG93952.1|2076807_2076921_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG93953.1|2076995_2079770_-	DNA polymerase I	NA	S5M8J1	Bacillus_phage	34.7	4.8e-50
SQG93954.1|2079784_2081512_-	glycine betaine transport system permease	NA	NA	NA	NA	NA
SQG93955.1|2081529_2082726_-	glycine betaine transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.7	1.5e-29
SQG93956.1|2083156_2084068_-	transcriptional regulator	NA	A0A1V0SBJ0	Catovirus	25.7	2.4e-14
SQG93957.1|2084279_2085371_-	putative L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA	NA
SQG93958.1|2085667_2087314_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
SQG93959.1|2087596_2088313_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
SQG93960.1|2088314_2089178_-	L-xylulose 5-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQG93961.1|2089181_2089844_-	3-keto-L-gulonate-6-phosphate decarboxylase	NA	NA	NA	NA	NA
SQG93962.1|2089952_2090438_-	PTS system 3-keto-L-gulonate specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG93963.1|2090560_2090839_-	PTS system, 3-keto-L-gulonate specific IIB component	NA	NA	NA	NA	NA
SQG93964.1|2090909_2092343_-	Ascorbate-specific PTS system, EIIC component	NA	NA	NA	NA	NA
SQG93965.1|2092647_2095149_-	LeuS	NA	A0A2H4PQS0	Staphylococcus_phage	65.7	0.0e+00
SQG93966.1|2095319_2096453_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG93967.1|2096673_2097105_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG93968.1|2097101_2097260_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG93969.1|2097544_2097772_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG93970.1|2097820_2098111_+	Mobile element protein	NA	A0A0C5AJ30	Paenibacillus_phage	53.9	5.9e-20
SQG93971.1|2098164_2098926_+|transposase	ISSdy1, transposase OrfB	transposase	A0A2I7SC85	Paenibacillus_phage	49.0	2.7e-64
>prophage 17
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	2172924	2184424	2249230	tRNA	Streptococcus_phage(50.0%)	9	NA	NA
SQG94037.1|2172924_2175480_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	25.2	5.9e-39
SQG94038.1|2175466_2175820_-	membrane protein	NA	NA	NA	NA	NA
SQG94039.1|2175816_2176254_-	arginine repressor	NA	NA	NA	NA	NA
SQG94040.1|2176542_2178234_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.4	6.4e-74
SQG94041.1|2178303_2179701_-	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.3	6.5e-48
SQG94042.1|2179877_2180792_-	transporter	NA	M1Q1P6	Streptococcus_phage	40.1	2.0e-53
SQG94043.1|2180821_2181721_-	hypothetical membrane spanning protein	NA	M1Q1P6	Streptococcus_phage	35.2	6.1e-47
SQG94044.1|2181741_2182683_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQG94045.1|2182675_2184424_-|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SJ84	Klosneuvirus	26.0	9.1e-15
>prophage 18
LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 genome assembly, chromosome: 1	2249230	2200781	2245118	2249230	protease,tRNA,transposase	Streptococcus_phage(45.45%)	44	NA	NA
SQG94065.1|2200781_2201396_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG94066.1|2201689_2201830_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG94067.1|2201831_2202602_-	putative Fe-S-cluster oxidoreductase	NA	NA	NA	NA	NA
SQG94068.1|2202672_2203536_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG94069.1|2204324_2205167_+	integral membrane protein	NA	NA	NA	NA	NA
SQG94070.1|2205250_2205571_-	redox-active disulfide protein 2	NA	NA	NA	NA	NA
SQG94071.1|2205652_2206324_-	NUDIX hydrolase	NA	NA	NA	NA	NA
SQG94072.1|2206470_2206797_+	transcriptional regulator PadR-like family protein	NA	NA	NA	NA	NA
SQG94073.1|2206783_2207371_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG94074.1|2207367_2208441_+	Adhesin AIDA-I	NA	NA	NA	NA	NA
SQG94075.1|2208565_2210839_-	phage protein	NA	NA	NA	NA	NA
SQG94076.1|2210973_2211507_+	putative transcriptional regulator, TetR/AcrR family	NA	NA	NA	NA	NA
SQG94077.1|2211807_2212446_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	88.9	1.7e-104
SQG94078.1|2212396_2212933_-|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	95.8	1.4e-75
SQG94079.1|2213007_2213619_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
SQG94080.1|2213807_2214275_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQG94081.1|2214427_2214700_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG94082.1|2214715_2216077_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.0	1.1e-153
SQG94083.1|2216112_2216565_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SQG94084.1|2216561_2218538_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
SQG94085.1|2218628_2220527_-|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	tRNA	NA	NA	NA	NA
SQG94086.1|2220578_2221028_-	phosphohydrolase	NA	NA	NA	NA	NA
SQG94087.1|2221241_2221850_-	MarC membrane protein	NA	NA	NA	NA	NA
SQG94088.1|2221881_2223003_-|tRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA	NA	NA	NA	NA
SQG94089.1|2223299_2223971_+	L-serine dehydratase subunit beta	NA	NA	NA	NA	NA
SQG94090.1|2223982_2224855_+	L-serine dehydratase subunit alpha	NA	NA	NA	NA	NA
SQG94091.1|2224880_2225528_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SQG94092.1|2225590_2226205_-	transglycosylase	NA	Q4Z8Z7	Staphylococcus_phage	75.0	7.1e-23
SQG94093.1|2226390_2227191_-	cobalt transport protein	NA	NA	NA	NA	NA
SQG94094.1|2227183_2228026_-	cobalt transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	3.7e-14
SQG94095.1|2228001_2228841_-	cobalt transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	30.8	1.5e-20
SQG94096.1|2228843_2229386_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQG94097.1|2229399_2230431_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG94098.1|2230480_2231764_-|protease	zinc protease	protease	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	30.3	4.6e-16
SQG94099.1|2231765_2233010_-|protease	zinc protease	protease	A0A1X9I714	Streptococcus_phage	42.5	2.3e-92
SQG94100.1|2233318_2233732_+	hypothetical cytosolic protein	NA	A0A1X9I5V8	Streptococcus_phage	70.7	2.0e-21
SQG94101.1|2233733_2234840_+	recombination protein F	NA	NA	NA	NA	NA
SQG94102.1|2234896_2235760_-	glucose uptake family protein	NA	NA	NA	NA	NA
SQG94103.1|2235971_2237453_-	inositol-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	5.8e-95
SQG94104.1|2237669_2238692_-|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG94105.1|2239117_2239990_+	membrane protein	NA	NA	NA	NA	NA
SQG94106.1|2240068_2241688_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	25.5	7.1e-46
SQG94107.1|2241772_2244382_+	ABC transporter permease	NA	NA	NA	NA	NA
SQG94108.1|2244992_2245118_+|transposase	truncated IS1239 transposase	transposase	NA	NA	NA	NA
