The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	347564	358291	1793521	tRNA	Streptococcus_phage(50.0%)	11	NA	NA
SQG55785.1|347564_350288_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.1	4.3e-19
SQG55787.1|350548_350899_+	ribosome-binding factor A	NA	NA	NA	NA	NA
SQG55789.1|351000_351582_+	putative lysine decarboxylase	NA	A0A1G5S9X4	Enterococcus_phage	35.8	3.3e-22
SQG55791.1|351825_352092_+|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG55793.1|352272_352704_+	transcriptional repressor CopY	NA	NA	NA	NA	NA
SQG55794.1|352741_354979_+	cation-transporting ATP-ase, P-type	NA	E4ZFI9	Streptococcus_phage	30.9	8.4e-90
SQG55796.1|354990_355197_+	cation-transporting ATP-ase, cation chaperone	NA	NA	NA	NA	NA
SQG55797.1|355286_355913_+	membrane protein	NA	NA	NA	NA	NA
SQG55799.1|355905_356718_+	HAD-superfamily hydrolase / phosphatase	NA	Q0GXW5	Lactococcus_phage	41.9	6.8e-05
SQG55801.1|356755_357313_-	TetR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	49.6	1.8e-17
SQG55803.1|357445_358291_+	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	62.8	8.7e-96
>prophage 2
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	379535	388855	1793521		Bacillus_virus(50.0%)	9	NA	NA
SQG55838.1|379535_380879_+	ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	29.7	2.5e-44
SQG55840.1|381071_381899_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQG55842.1|381913_382717_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQG55844.1|382716_383460_+	polar amino acid transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.2	1.2e-27
SQG55846.1|383542_383767_+	membrane protein	NA	NA	NA	NA	NA
SQG55847.1|383833_384748_+	NADPH-dependent thioredoxin reductase	NA	G3MA85	Bacillus_virus	52.4	2.3e-86
SQG55849.1|384995_386456_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.7	6.1e-105
SQG55851.1|386455_387280_+	NAD+ synthase	NA	G3MA24	Bacillus_virus	54.6	3.5e-73
SQG55853.1|387517_388855_+	bleomycin hydrolase	NA	R4TV59	Phaeocystis_globosa_virus	35.5	9.3e-68
>prophage 3
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	437924	488667	1793521	transposase,tRNA,protease	Paenibacillus_phage(13.33%)	58	NA	NA
SQG55929.1|437924_438611_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	42.0	3.7e-36
SQG55931.1|438778_440038_+|transposase	IS3 familytransposase orf2	transposase	A0A0C5AC89	Paenibacillus_phage	46.9	8.5e-31
SQG55933.1|440952_441945_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.6	1.1e-52
SQG55934.1|442078_442810_-	signal peptide containing protein	NA	NA	NA	NA	NA
SQG55936.1|442981_443824_-	signal peptide containing protein	NA	NA	NA	NA	NA
SQG55938.1|443946_444495_+	methylase family protein	NA	NA	NA	NA	NA
SQG55939.1|444526_445024_+	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	33.1	6.6e-19
SQG55941.1|445001_446087_+	putative secreted protein containing a PDZ domain protein	NA	NA	NA	NA	NA
SQG55943.1|446217_446466_+	membrane protein	NA	NA	NA	NA	NA
SQG55945.1|446570_447899_+	phosphoesterase	NA	S4VPC4	Pandoravirus	24.3	4.6e-11
SQG55947.1|447928_448450_+	Hypothetical DUF1027 domain protein	NA	NA	NA	NA	NA
SQG55949.1|448510_449611_+	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA
SQG55951.1|449620_450127_+	glycopeptide antibiotics resistance protein	NA	NA	NA	NA	NA
SQG55953.1|450611_451178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.1e-05
SQG55954.1|451174_451423_+	ABC-type multidrug transport system, permease component	NA	NA	NA	NA	NA
SQG55956.1|451592_451787_+	ABC-2 type transport system permease protein	NA	NA	NA	NA	NA
SQG55958.1|451786_451957_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQG55960.1|451977_452307_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQG55962.1|452325_452667_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQG55963.1|452875_453283_+	two-component response regulator	NA	NA	NA	NA	NA
SQG55965.1|453257_453461_+	two-component response regulator	NA	NA	NA	NA	NA
SQG55967.1|453586_454744_+	permease	NA	NA	NA	NA	NA
SQG55969.1|455192_455966_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	36.3	3.5e-27
SQG55971.1|455952_456534_+	phosphoribosyl anthranilate isomerase	NA	NA	NA	NA	NA
SQG55972.1|456607_457630_+	tryptophan synthase beta chain	NA	NA	NA	NA	NA
SQG55974.1|457744_458257_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA	NA
SQG55976.1|458222_458528_+	tryptophan synthase (alpha subunit)	NA	NA	NA	NA	NA
SQG55978.1|458563_459904_-	metal ion (Mn2+-iron) transporter (NRAMP) family protein	NA	NA	NA	NA	NA
SQG55979.1|459997_460648_-	type IV prepilin peptidase, putative	NA	NA	NA	NA	NA
SQG55982.1|460786_461311_+	Dps-like peroxide resistance protein	NA	NA	NA	NA	NA
SQG55984.1|461393_461651_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG55985.1|461643_462612_+	glucokinase	NA	NA	NA	NA	NA
SQG55987.1|462622_463003_+	Rhodanese-related sulfur transferase	NA	NA	NA	NA	NA
SQG55989.1|463017_463194_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG55991.1|463224_464049_+	signal peptide	NA	NA	NA	NA	NA
SQG55992.1|464236_466084_+	GTP-binding protein TypA	NA	A0A2K9L6L3	Tupanvirus	39.6	2.0e-20
SQG55994.1|466225_466498_+	membrane protein	NA	NA	NA	NA	NA
SQG55996.1|466640_467996_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA	NA
SQG55998.1|467998_469075_+	N-acetylglucosaminyl transferase	NA	NA	NA	NA	NA
SQG56000.1|469075_470311_+	putative cell division protein FtsQ (DivIB)	NA	NA	NA	NA	NA
SQG56002.1|470332_471286_-|transposase	transposase IS1239	transposase	H7BWC8	unidentified_phage	36.0	3.4e-40
SQG56003.1|471572_471830_+	phage protein	NA	NA	NA	NA	NA
SQG56005.1|471839_472190_+	phage protein	NA	NA	NA	NA	NA
SQG56006.1|472482_472686_+	Cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	73.8	5.7e-22
SQG56008.1|473359_473773_+	phage protein	NA	NA	NA	NA	NA
SQG56010.1|474029_474215_+	paratox	NA	J7KBZ4	Streptococcus_phage	66.1	3.1e-14
SQG56011.1|474569_475943_+	cell division protein FtsA	NA	NA	NA	NA	NA
SQG56012.1|475962_477288_+	cell division protein FtsZ	NA	NA	NA	NA	NA
SQG56015.1|477287_477962_+	pyridoxal phosphate enzyme, YggS family	NA	NA	NA	NA	NA
SQG56016.1|477974_478586_+	cell division protein sepF	NA	NA	NA	NA	NA
SQG56018.1|478589_478847_+	YggT family protein	NA	NA	NA	NA	NA
SQG56020.1|478843_479629_+	YlmH protein	NA	NA	NA	NA	NA
SQG56022.1|480735_483534_+|tRNA	isoleucyl-tRNA synthetase	tRNA	A0A2I2L3Y0	Orpheovirus	25.7	2.0e-72
SQG56024.1|483620_483923_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
SQG56025.1|483994_484441_-	NTP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQG56027.1|484642_486928_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.9	2.7e-128
SQG56029.1|487315_487852_+|transposase	IS861, transposase OrfA	transposase	A0A1B1P776	Bacillus_phage	28.5	7.6e-05
SQG56031.1|487947_488667_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	51.5	5.7e-56
>prophage 4
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	526135	532573	1793521	transposase	Bacillus_phage(33.33%)	6	NA	NA
SQG56100.1|526135_527089_-|transposase	transposase IS1239	transposase	H7BWC8	unidentified_phage	35.6	5.3e-41
SQG56102.1|527386_528931_+	regulator of gtfB	NA	A0A1B0RXH7	Streptococcus_phage	27.5	1.1e-35
SQG56103.1|529005_529542_+|transposase	IS861, transposase OrfA	transposase	A0A1B1P776	Bacillus_phage	28.5	7.6e-05
SQG56105.1|529637_530357_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	51.0	1.7e-55
SQG56106.1|530715_532293_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.8	2.3e-65
SQG56108.1|532333_532573_-	putative endonuclease	NA	W8W2G4	Invertebrate_iridovirus	41.1	1.6e-07
>prophage 5
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	558305	568573	1793521		Staphylococcus_phage(50.0%)	10	NA	NA
SQG56149.1|558305_559436_+	acetylornithine aminotransferase	NA	A0A249XSK4	Mycobacterium_phage	29.0	8.5e-14
SQG56151.1|559530_560088_+	oxidoreductase-associated protein	NA	NA	NA	NA	NA
SQG56153.1|560579_561635_+	riboflavin-specific deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	32.0	4.9e-40
SQG56154.1|561634_562237_+	riboflavin synthase (alpha subunit)	NA	A0A2H4PQS5	Staphylococcus_phage	38.4	4.1e-31
SQG56156.1|562237_563416_+	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	50.0	3.9e-102
SQG56158.1|563436_563898_+	riboflavin synthase subunit beta	NA	A0A2H4PQS3	Staphylococcus_phage	56.7	3.5e-43
SQG56160.1|563960_564527_-	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA	NA
SQG56161.1|564763_565729_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	2.0e-128
SQG56163.1|566115_568275_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.3	1.2e-261
SQG56165.1|568345_568573_-	glutaredoxin	NA	A0A0M7REK7	Lactobacillus_phage	41.6	1.3e-11
>prophage 6
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	823497	832335	1793521		Streptococcus_phage(57.14%)	8	NA	NA
SQG56574.1|823497_824184_+	Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family	NA	E8ZDN4	Streptococcus_phage	49.6	1.5e-58
SQG56575.1|824185_824389_+	Uncharacterised protein	NA	D0R0A4	Streptococcus_phage	47.7	6.0e-11
SQG56576.1|824389_825805_+	ImpB/MucB/SamB family protein	NA	M1Q231	Streptococcus_phage	72.8	8.3e-200
SQG56577.1|825806_826166_+	YolD-like protein	NA	E4ZFJ1	Streptococcus_phage	47.8	1.2e-17
SQG56578.1|826186_826381_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG56579.1|826500_827178_+	Methylase	NA	A0A2H4YF91	Aeromonas_phage	34.0	1.4e-08
SQG56580.1|827182_831553_+	reticulocyte binding protein	NA	A0A1V0SII8	Klosneuvirus	21.6	3.2e-24
SQG56581.1|831564_832335_+	phage protein	NA	A0A0N7GFI3	Staphylococcus_phage	33.5	5.4e-20
>prophage 7
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	895186	940588	1793521	transposase,tRNA,bacteriocin	Bacillus_phage(25.0%)	48	NA	NA
SQG56693.1|895186_895906_-|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	51.0	1.3e-55
SQG56695.1|895998_896535_-|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQG56697.1|896603_897842_-	putative histidine kinase sensor CiaH	NA	Q8QNA2	Ectocarpus_siliculosus_virus	36.8	2.4e-09
SQG56699.1|897921_898596_-	DNA-binding response regulator CiaR	NA	NA	NA	NA	NA
SQG56701.1|898763_901307_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.9	1.9e-66
SQG56704.1|901537_902191_-	phosphate transport system protein	NA	NA	NA	NA	NA
SQG56706.1|902221_902980_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.0	1.7e-18
SQG56709.1|902991_903795_-	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	NA	G3M9Y6	Bacillus_virus	29.0	1.3e-16
SQG56711.1|903805_904693_-	phosphate transport system permease	NA	NA	NA	NA	NA
SQG56713.1|904682_905600_-	phosphate transport system permease	NA	NA	NA	NA	NA
SQG56715.1|905609_906476_-	ABC transporter, phosphate-binding protein	NA	M4QRU1	Synechococcus_phage	29.1	7.7e-07
SQG56717.1|906620_907931_-	RNA methylase	NA	NA	NA	NA	NA
SQG56719.1|908287_909643_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.1	8.3e-32
SQG56721.1|909656_909989_-|bacteriocin	bacteriocin transport accessory protein, putative	bacteriocin	NA	NA	NA	NA
SQG56723.1|910083_910407_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
SQG56725.1|910512_911337_-	zinc transporter, ZIP family	NA	NA	NA	NA	NA
SQG56727.1|911435_912200_-	inositol monophosphatase family protein	NA	NA	NA	NA	NA
SQG56729.1|912189_912465_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG56731.1|912546_912951_-	transcriptional regulator	NA	NA	NA	NA	NA
SQG56733.1|912981_913926_-	riboflavin biosynthesis protein RibC	NA	NA	NA	NA	NA
SQG56735.1|913939_914821_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQG56737.1|914895_916257_-	putative sensory box protein	NA	NA	NA	NA	NA
SQG56739.1|916249_916489_-	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
SQG56741.1|916576_917914_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQG56742.1|917985_918582_-	Restriction endonuclease S subunit	NA	NA	NA	NA	NA
SQG56744.1|918693_921327_-	putative ABC transporter permease	NA	NA	NA	NA	NA
SQG56746.1|921337_922039_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	3.2e-35
SQG56749.1|922180_922729_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQG56751.1|922772_923264_-	thiol peroxidase	NA	NA	NA	NA	NA
SQG56753.1|923490_923805_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
SQG56755.1|924233_926585_-	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	41.7	2.3e-130
SQG56758.1|926691_927159_-	glutamine amidotransferase	NA	NA	NA	NA	NA
SQG56759.1|927203_927386_-	pyridoxine biosynthesis protein	NA	NA	NA	NA	NA
SQG56761.1|927369_927849_-	pyridoxine biosynthesis protein	NA	NA	NA	NA	NA
SQG56763.1|927870_928026_-	pyridoxine biosynthesis protein	NA	NA	NA	NA	NA
SQG56765.1|928130_928505_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG56767.1|928501_929530_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQG56769.1|930019_931351_+	alanine or glycine:cation symporter	NA	NA	NA	NA	NA
SQG56771.1|931385_931556_-	HAD-superfamily hydrolase / phosphatase	NA	NA	NA	NA	NA
SQG56773.1|932275_932644_+|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	33.7	5.4e-10
SQG56776.1|933652_934975_-	VncS, histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	2.4e-12
SQG56778.1|934971_935628_-	DNA-binding response regulator VncR	NA	W8CYM9	Bacillus_phage	36.3	6.6e-27
SQG56780.1|935774_937154_-	ABC transporter, transmembrane protein Vexp3	NA	NA	NA	NA	NA
SQG56782.1|937209_937857_-	ABC transporter, ATP-binding protein Vexp2	NA	G3M9Y6	Bacillus_virus	34.8	7.5e-23
SQG56784.1|937869_939147_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
SQG56786.1|939551_939923_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	75.8	8.6e-40
SQG56788.1|939892_940087_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	73.4	2.3e-20
SQG56790.1|940258_940588_+|transposase	transposase for IS660	transposase	A0A1X9I5T2	Streptococcus_phage	62.6	3.5e-37
>prophage 8
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1003919	1024847	1793521	tRNA	Bacillus_phage(37.5%)	22	NA	NA
SQG56941.1|1003919_1004765_+	oxidoreductase, aldo/keto reductase family	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	2.0e-55
SQG56943.1|1004806_1006033_-	two component system histidine kinase	NA	W8CYF6	Bacillus_phage	22.7	1.1e-06
SQG56945.1|1006041_1006722_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	30.2	3.1e-19
SQG56947.1|1006724_1007360_-	RelA/SpoT domain-containing protein	NA	NA	NA	NA	NA
SQG56949.1|1007459_1009232_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.0	1.6e-46
SQG56951.1|1009221_1011036_-	ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	29.1	3.8e-16
SQG56953.1|1011039_1011480_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQG56955.1|1011624_1012035_-	polypeptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	2.5e-08
SQG56957.1|1012225_1012540_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQG56959.1|1012697_1014047_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
SQG56960.1|1014283_1014781_+	membrane protein	NA	NA	NA	NA	NA
SQG56962.1|1014817_1015309_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	61.6	7.4e-47
SQG56964.1|1015458_1015770_-	radical SAM domain-containing protein	NA	E7DN68	Pneumococcus_phage	39.8	1.4e-14
SQG56966.1|1015770_1016091_-	radical SAM domain-containing protein	NA	E7DN68	Pneumococcus_phage	45.1	4.4e-24
SQG56968.1|1016170_1016617_-	6-pyruvoyl tetrahydrobiopterin synthase, putative	NA	J9PV91	Bacillus_phage	57.8	2.9e-42
SQG56970.1|1016616_1017081_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.0	1.2e-38
SQG56972.1|1017105_1017270_-	queuosine biosynthesis protein QueC	NA	M1PKZ7	Cellulophaga_phage	66.0	9.7e-12
SQG56974.1|1017434_1019204_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	1.0e-58
SQG56976.1|1019206_1020946_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.2e-37
SQG56978.1|1021053_1021749_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG56980.1|1021776_1023645_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.0	2.7e-65
SQG56982.1|1023641_1024847_-|tRNA	tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.0	2.1e-42
>prophage 9
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1352877	1362735	1793521		Streptococcus_phage(75.0%)	12	NA	NA
SQG57607.1|1352877_1353969_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	81.8	7.8e-174
SQG57609.1|1354103_1354733_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
SQG57611.1|1354849_1355191_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
SQG57614.1|1355271_1356507_-	ammonium transporter	NA	NA	NA	NA	NA
SQG57616.1|1356855_1357728_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	NA	M1PLC5	Streptococcus_phage	74.3	7.5e-119
SQG57618.1|1357737_1358058_-	DNA replication intiation control protein	NA	M1PFV3	Streptococcus_phage	62.3	9.1e-30
SQG57620.1|1358050_1358851_-	putative PSP1-like protein	NA	NA	NA	NA	NA
SQG57622.1|1358847_1359723_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	2.2e-70
SQG57624.1|1359743_1360370_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.6	4.6e-70
SQG57627.1|1360464_1361124_-	acetoin utilization protein AcuB	NA	M1NSC5	Streptococcus_phage	63.8	1.7e-70
SQG57629.1|1361260_1361971_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	7.0e-14
SQG57631.1|1361970_1362735_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	7.2e-17
>prophage 10
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1512075	1518230	1793521		Lactobacillus_phage(66.67%)	9	NA	NA
SQG57971.1|1512075_1513224_+	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	30.1	8.6e-22
SQG57973.1|1513532_1513691_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.3	5.3e-07
SQG57975.1|1513776_1514505_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	63.9	1.0e-73
SQG57977.1|1514501_1514963_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	56.7	4.3e-41
SQG57979.1|1514989_1515880_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	66.9	1.3e-110
SQG57981.1|1516265_1516646_-	putative lipoprotein	NA	NA	NA	NA	NA
SQG57983.1|1516718_1517354_-	putative membrane protein yetF	NA	NA	NA	NA	NA
SQG57985.1|1517357_1517807_-	Protein of uncharacterised function (DUF3290)	NA	NA	NA	NA	NA
SQG57987.1|1517915_1518230_-	thioredoxin 1	NA	A0A1J0GW78	Streptomyces_phage	47.3	3.9e-17
>prophage 11
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1593299	1650720	1793521	transposase,tRNA,protease	Bacillus_phage(41.67%)	56	NA	NA
SQG58133.1|1593299_1593803_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQG58135.1|1593922_1594702_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	49.6	3.9e-66
SQG58137.1|1595335_1596154_-	iron/zinc/copper transport system ATP-binding protein	NA	NA	NA	NA	NA
SQG58139.1|1596164_1596878_-	iron/zinc/copper transport system permease protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.3	1.3e-15
SQG58141.1|1596920_1597847_-	iron/zinc/copper transport system substrate-binding protein	NA	NA	NA	NA	NA
SQG58143.1|1598103_1599375_-	malate-sodium symport	NA	NA	NA	NA	NA
SQG58145.1|1599396_1601019_-	malate dehydrogenase	NA	NA	NA	NA	NA
SQG58147.1|1601175_1602057_+	malolactic fermentation system transcriptional regulator	NA	NA	NA	NA	NA
SQG58149.1|1602115_1603381_-	D-Alanine extra membranal transfer protein	NA	NA	NA	NA	NA
SQG58151.1|1603373_1603613_-	D-alanine-poly(phosphoribitol) ligase	NA	NA	NA	NA	NA
SQG58153.1|1603645_1604908_-	integral membrane protein (involved in D-Ala transport)	NA	NA	NA	NA	NA
SQG58155.1|1604904_1606443_-	D-alanine-poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	28.1	3.0e-38
SQG58157.1|1606458_1606581_-	D-Ala-teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
SQG58159.1|1606590_1607748_-	Regulation of D-alanyl-lipoteichoicacid biosynthesis, sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.6	2.1e-20
SQG58161.1|1607744_1608434_-	Regulation of D-alanyl-lipoteichoicacid biosynthesis, DltR	NA	W8CYM9	Bacillus_phage	35.5	1.4e-30
SQG58163.1|1608759_1609554_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQG58165.1|1609712_1610264_-	beta-(1,3-1,4)-glucanase	NA	NA	NA	NA	NA
SQG58167.1|1610365_1610557_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58170.1|1610878_1611724_-	binding-protein-dependent transport systems inner membrane component	NA	NA	NA	NA	NA
SQG58172.1|1611723_1612668_-	lactose/L-arabinose transport system permease protein	NA	NA	NA	NA	NA
SQG58174.1|1612828_1614196_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58177.1|1614576_1617273_+	cellobiose phosphorylase-like protein	NA	NA	NA	NA	NA
SQG58179.1|1617293_1619705_+	glycosyltransferase 36	NA	NA	NA	NA	NA
SQG58181.1|1620084_1620768_-	Endo-beta-1,3-1,4 glucanase (Licheninase)	NA	NA	NA	NA	NA
SQG58183.1|1621194_1621368_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58185.1|1621635_1621770_-	LSU ribosomal protein L34p	NA	NA	NA	NA	NA
SQG58187.1|1621961_1622363_-	membrane protein	NA	NA	NA	NA	NA
SQG58190.1|1622373_1622829_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQG58192.1|1622842_1623682_-	ABC-2 type transport system permease protein	NA	NA	NA	NA	NA
SQG58194.1|1623682_1624534_-	antibiotic transport system ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	8.9e-16
SQG58196.1|1624610_1625330_-|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	51.0	1.7e-55
SQG58198.1|1625425_1625962_-|transposase	IS861, transposase OrfA	transposase	A0A1B1P776	Bacillus_phage	28.8	5.8e-05
SQG58200.1|1626097_1627105_-	putative RNA-binding protein	NA	NA	NA	NA	NA
SQG58202.1|1627117_1627888_-	preprotein translocase YidC subunit	NA	NA	NA	NA	NA
SQG58204.1|1627916_1628276_-	ribonuclease P protein component	NA	NA	NA	NA	NA
SQG58206.1|1628416_1629835_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SQG58208.1|1630246_1631497_-	argininosuccinate synthase	NA	NA	NA	NA	NA
SQG58211.1|1631653_1632820_-	MFS transporter, CP family, cyanate transporter	NA	NA	NA	NA	NA
SQG58213.1|1632925_1634383_-|tRNA	nondiscriminating glutamyl-tRNA synthetase	tRNA	A0A2K9L0I5	Tupanvirus	23.9	2.1e-09
SQG58215.1|1634505_1635003_-	Protein of uncharacterised function (DUF567)	NA	NA	NA	NA	NA
SQG58217.1|1635041_1635968_-	Oxidoreductase, aldo-keto reductase family	NA	NA	NA	NA	NA
SQG58219.1|1635994_1636492_-	carbonic anhydrase	NA	NA	NA	NA	NA
SQG58221.1|1636607_1637855_-	DNA repair protein	NA	NA	NA	NA	NA
SQG58223.1|1638004_1638451_-	dUTP pyrophosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	50.0	1.4e-31
SQG58225.1|1638477_1639245_-	DNA integration/recombination/invertion protein	NA	NA	NA	NA	NA
SQG58227.1|1639444_1640461_+	NAD(P)+-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG58229.1|1640521_1641442_+	UDP-glucose pyrophosphorylase	NA	A0A127AW70	Bacillus_phage	51.7	7.5e-77
SQG58231.1|1641503_1642175_-	rhomboid family membrane protein	NA	NA	NA	NA	NA
SQG58233.1|1642171_1642699_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQG58235.1|1642979_1644113_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
SQG58237.1|1644171_1644870_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SQG58239.1|1645360_1646380_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG58241.1|1646774_1647311_+	ATPase involved in DNA repair	NA	NA	NA	NA	NA
SQG58243.1|1647384_1649499_-	Cu2+-Cu+-Ag+-P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.8	2.0e-64
SQG58246.1|1649644_1649962_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58248.1|1649979_1650720_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1716374	1764662	1793521	integrase,transposase,tRNA	Streptococcus_phage(58.33%)	60	1718266:1718282	1732857:1732873
SQG58378.1|1716374_1717652_-|tRNA	histidyl-tRNA synthetase	tRNA	A0A2K9L0H9	Tupanvirus	26.2	1.6e-24
SQG58380.1|1717940_1718117_+	LSU ribosomal protein L32p	NA	NA	NA	NA	NA
SQG58382.1|1718132_1718282_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA	NA
1718266:1718282	attL	TTACTGAAGTTAAATAA	NA	NA	NA	NA
SQG58384.1|1718428_1719811_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58386.1|1719897_1721394_-|integrase	phage integrase family site specific recombinase	integrase	A1EAB7	Streptococcus_phage	24.7	2.7e-15
SQG58389.1|1721409_1721658_-	excisionase	NA	NA	NA	NA	NA
SQG58391.1|1721644_1722280_-	DNA translocase FtsK	NA	NA	NA	NA	NA
SQG58393.1|1722509_1722761_-	membrane protein	NA	NA	NA	NA	NA
SQG58395.1|1722818_1723139_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58397.1|1723334_1723841_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58399.1|1724461_1724983_-	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
SQG58401.1|1725080_1726565_-|integrase	phage integrase family site specific recombinase	integrase	A0A1S5SA77	Streptococcus_phage	24.8	6.6e-06
SQG58403.1|1726574_1726823_-	excisionase	NA	NA	NA	NA	NA
SQG58404.1|1726890_1727919_-	DNA relaxase nicK	NA	A0A1S5SEX3	Streptococcus_phage	25.6	5.5e-20
SQG58406.1|1727921_1728353_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58408.1|1728863_1729082_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58410.1|1729081_1729297_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58412.1|1729618_1730539_+	Cro/CI family transcriptional regulator	NA	NA	NA	NA	NA
SQG58414.1|1730559_1731048_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58417.1|1731859_1732669_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58419.1|1733047_1733233_-	Uncharacterised protein	NA	NA	NA	NA	NA
1732857:1732873	attR	TTACTGAAGTTAAATAA	NA	NA	NA	NA
SQG58421.1|1733608_1734490_-	Transcription regulator	NA	A0A1V0SBJ0	Catovirus	25.2	4.7e-12
SQG58423.1|1734566_1735619_-	membrane protein	NA	NA	NA	NA	NA
SQG58424.1|1735661_1736033_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58426.1|1736036_1736153_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58428.1|1736731_1736971_+	putative protein YtgB	NA	NA	NA	NA	NA
SQG58430.1|1737032_1737599_+	membrane protein	NA	NA	NA	NA	NA
SQG58432.1|1737610_1737781_+	putative lipoprotein	NA	NA	NA	NA	NA
SQG58435.1|1737795_1738356_+	General stress protein, Gls24 family	NA	NA	NA	NA	NA
SQG58437.1|1738439_1738643_+	CsbD-like protein	NA	NA	NA	NA	NA
SQG58439.1|1738845_1739565_-|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	51.5	2.4e-54
SQG58441.1|1739660_1739849_-	OrfA, transposon ISSsa2	NA	NA	NA	NA	NA
SQG58443.1|1740005_1740197_-|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQG58445.1|1740275_1740629_-	membrane protein	NA	NA	NA	NA	NA
SQG58447.1|1740848_1743176_-	cell wall surface protein	NA	NA	NA	NA	NA
SQG58449.1|1743307_1743844_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SQG58451.1|1743998_1744166_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG58453.1|1744651_1745263_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
SQG58455.1|1745519_1745792_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQG58457.1|1745816_1747178_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	62.6	2.3e-154
SQG58459.1|1747211_1747664_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SQG58461.1|1747660_1749640_-	putative signaling protein consisting of a modified GGDEF domain and a DHH domain-containing protein	NA	NA	NA	NA	NA
SQG58463.1|1749749_1751654_-	glucose inhibited division protein A	NA	NA	NA	NA	NA
SQG58465.1|1751962_1753084_-|tRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA	NA	NA	NA	NA
SQG58468.1|1753342_1754014_+	L-serine dehydratase beta subunit	NA	NA	NA	NA	NA
SQG58470.1|1754025_1754898_+	L-serine dehydratase alpha subunit	NA	NA	NA	NA	NA
SQG58473.1|1754986_1755622_+	HAD-superfamily hydrolase/phosphatase	NA	NA	NA	NA	NA
SQG58475.1|1755650_1756319_-	transglycosylase	NA	Q4Z8Z7	Staphylococcus_phage	73.5	9.7e-26
SQG58477.1|1756571_1757171_-	LysM repeat-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	45.3	1.2e-22
SQG58480.1|1757422_1758592_-	Integrase	NA	A0A1X9I5Y5	Streptococcus_phage	46.4	2.3e-86
SQG58482.1|1758722_1759301_-	DNA polymerase III subunit beta	NA	A0A286QNE7	Streptococcus_phage	55.9	2.4e-12
SQG58484.1|1759620_1760268_+	prophage Sa05 BRO domain-containing protein	NA	NA	NA	NA	NA
SQG58485.1|1760447_1760645_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58487.1|1760657_1760906_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58489.1|1761114_1761270_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58491.1|1761262_1761403_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG58494.1|1761407_1761683_+	phage related protein	NA	NA	NA	NA	NA
SQG58496.1|1761699_1761972_+	phage protein	NA	NA	NA	NA	NA
SQG58498.1|1763033_1763456_+	putative autolysin regulatory protein arpU	NA	A0A141E173	Streptococcus_phage	39.1	1.5e-16
SQG58500.1|1764353_1764662_+|transposase	ISSag3, transposase	transposase	NA	NA	NA	NA
>prophage 13
LS483403	Streptococcus lutetiensis strain NCTC13774 genome assembly, chromosome: 1	1793521	1768791	1777075	1793521		Staphylococcus_phage(50.0%)	9	NA	NA
SQG58508.1|1768791_1769370_-	IS1272 ORF1 and ORF2	NA	A0A146ICT8	Staphylococcus_phage	65.2	1.9e-25
SQG58510.1|1769425_1769851_-	IS1272 ORF1 and ORF2	NA	A0A146ICT8	Staphylococcus_phage	40.8	3.9e-20
SQG58513.1|1770522_1771317_-	ABC transporter permease	NA	NA	NA	NA	NA
SQG58515.1|1771309_1772152_-	cobalt/nickel transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	6.8e-16
SQG58517.1|1772127_1772967_-	cobalt/nickel transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	5.9e-20
SQG58519.1|1772963_1773518_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQG58522.1|1773530_1774475_-	putative membrane associated protein	NA	NA	NA	NA	NA
SQG58525.1|1774540_1775830_-	Peptidase, M16 family	NA	A0A2K9V7S4	Bandra_megavirus	28.7	1.2e-19
SQG58527.1|1775830_1777075_-	putative Zn-dependent peptidase	NA	A0A1X9I714	Streptococcus_phage	43.0	3.0e-89
