assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475665.1_45813_D02	LS483398	Bordetella pertussis strain NCTC10910 genome assembly, chromosome: 1	1	586526-586610	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|238aa|up_9|LS483398.1_575483_576197_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|348aa|up_8|LS483398.1_576270_577314_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|701aa|up_7|LS483398.1_577484_579587_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|277aa|up_6|LS483398.1_580140_580971_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|319aa|up_5|LS483398.1_580997_581954_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|164aa|up_4|LS483398.1_581972_582464_-	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|452aa|up_3|LS483398.1_582460_583816_-	TIGR01942, pcnB, poly(A) polymerase	NA|233aa|up_2|LS483398.1_583816_584515_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|234aa|up_1|LS483398.1_584511_585213_-	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|350aa|up_0|LS483398.1_585465_586515_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|314aa|down_0|LS483398.1_586620_587562_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|630aa|down_1|LS483398.1_587558_589448_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|213aa|down_2|LS483398.1_589534_590173_+	PRK10847, PRK10847, DedA family protein	NA|415aa|down_3|LS483398.1_590315_591560_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|179aa|down_4|LS483398.1_591631_592168_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|464aa|down_5|LS483398.1_592319_593711_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|304aa|down_6|LS483398.1_593727_594639_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|328aa|down_7|LS483398.1_594843_595827_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|300aa|down_8|LS483398.1_595891_596791_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|585aa|down_9|LS483398.1_596897_598652_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]
GCA_900475665.1_45813_D02	LS483398	Bordetella pertussis strain NCTC10910 genome assembly, chromosome: 1	2	767969-768062	2	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|156aa|up_9|LS483398.1_756523_756991_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|326aa|up_8|LS483398.1_757083_758061_+	pfam00665, rve, Integrase core domain	NA|402aa|up_7|LS483398.1_758256_759462_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|502aa|up_6|LS483398.1_759464_760970_+	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|438aa|up_5|LS483398.1_760985_762299_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|60aa|up_4|LS483398.1_762489_762669_-	pfam04391, DUF533, Protein of unknown function (DUF533)	DEDDh|245aa|up_3|LS483398.1_763078_763813_-	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|791aa|up_2|LS483398.1_763821_766194_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|317aa|up_1|LS483398.1_766257_767208_+	pfam00665, rve, Integrase core domain	NA|133aa|up_0|LS483398.1_767339_767738_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|LS483398.1_768148_768619_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|LS483398.1_768707_769052_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|459aa|down_2|LS483398.1_769151_770528_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|604aa|down_3|LS483398.1_770532_772344_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|173aa|down_4|LS483398.1_772340_772859_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_5|LS483398.1_772969_773725_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|411aa|down_6|LS483398.1_773920_775153_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_7|LS483398.1_775145_775931_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_8|LS483398.1_775997_776969_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|326aa|down_9|LS483398.1_776979_777957_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold
GCA_900475665.1_45813_D02	LS483398	Bordetella pertussis strain NCTC10910 genome assembly, chromosome: 1	3	1334392-1334486	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	TAAAAGGGCACCCGCAAGGGTGTCCTTTT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA|127aa|up_2|LS483398.1_1332378_1332759_+,NA	NA|68aa|up_9|LS483398.1_1324871_1325075_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|224aa|up_8|LS483398.1_1325099_1325771_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|261aa|up_7|LS483398.1_1325885_1326668_+	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|355aa|up_6|LS483398.1_1326692_1327757_+	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|570aa|up_5|LS483398.1_1327753_1329463_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|259aa|up_4|LS483398.1_1329985_1330762_+	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|425aa|up_3|LS483398.1_1330950_1332225_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|127aa|up_2|LS483398.1_1332378_1332759_+	NA	NA|278aa|up_1|LS483398.1_1332766_1333600_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|127aa|up_0|LS483398.1_1333944_1334325_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|222aa|down_0|LS483398.1_1334595_1335261_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|317aa|down_1|LS483398.1_1335356_1336307_-	pfam00665, rve, Integrase core domain	NA|350aa|down_2|LS483398.1_1336411_1337461_+	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins	NA|310aa|down_3|LS483398.1_1337598_1338528_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|428aa|down_4|LS483398.1_1338767_1340051_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|191aa|down_5|LS483398.1_1340123_1340696_-	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism]	NA|244aa|down_6|LS483398.1_1340755_1341487_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|312aa|down_7|LS483398.1_1341538_1342474_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|200aa|down_8|LS483398.1_1342706_1343306_+	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|1060aa|down_9|LS483398.1_1343263_1346443_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCA_900475665.1_45813_D02	LS483398	Bordetella pertussis strain NCTC10910 genome assembly, chromosome: 1	4	3792228-3792337	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG	Orphan	TTGACTGCCAAGACGGTATCTGTCCCC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG	NA,NA	NA|83aa|up_9|LS483398.1_3782567_3782816_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|293aa|up_8|LS483398.1_3782799_3783678_+	pfam00487, FA_desaturase, Fatty acid desaturase	NA|111aa|up_7|LS483398.1_3783713_3784046_+	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase	NA|107aa|up_6|LS483398.1_3785207_3785528_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|317aa|up_5|LS483398.1_3785626_3786577_+	pfam00665, rve, Integrase core domain	NA|156aa|up_4|LS483398.1_3786573_3787041_-	PRK00203, rnhA, ribonuclease H; Reviewed	NA|257aa|up_3|LS483398.1_3787083_3787854_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|267aa|up_2|LS483398.1_3787874_3788675_+	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|470aa|up_1|LS483398.1_3788685_3790095_+	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|262aa|up_0|LS483398.1_3790189_3790975_+	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|131aa|down_0|LS483398.1_3792338_3792731_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|227aa|down_1|LS483398.1_3792868_3793549_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|327aa|down_2|LS483398.1_3793553_3794534_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|317aa|down_3|LS483398.1_3794620_3795571_-	pfam00665, rve, Integrase core domain	NA|410aa|down_4|LS483398.1_3795652_3796882_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|234aa|down_5|LS483398.1_3797075_3797777_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|475aa|down_6|LS483398.1_3797776_3799201_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|352aa|down_7|LS483398.1_3799217_3800273_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|447aa|down_8|LS483398.1_3800269_3801610_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|588aa|down_9|LS483398.1_3801725_3803489_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional
