The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	36269	48630	1795272		Synechococcus_phage(28.57%)	8	NA	NA
SQG52943.1|36269_40043_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
SQG52953.1|40203_41658_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	8.3e-54
SQG52956.1|41685_42708_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQG52958.1|42875_43430_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
SQG52960.1|43613_45161_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQG52963.1|45218_46343_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQG52965.1|46595_47861_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQG52968.1|48138_48630_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	184084	203552	1795272	integrase,transposase,tRNA	Bacillus_phage(66.67%)	19	177273:177286	186684:186697
177273:177286	attL	TACCAATGCCATTT	NA	NA	NA	NA
SQG53393.1|184084_184654_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.0	2.6e-27
SQG53397.1|184686_184902_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG53400.1|185057_186368_-	membrane protein	NA	NA	NA	NA	NA
SQG53403.1|186591_187464_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
186684:186697	attR	TACCAATGCCATTT	NA	NA	NA	NA
SQG53407.1|187763_188570_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	9.2e-63
SQG53411.1|188590_189106_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG53414.1|189191_190055_-	membrane protein	NA	NA	NA	NA	NA
SQG53418.1|190273_191416_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.9e-86
SQG53423.1|191633_191945_+	helper of Tim protein 13	NA	NA	NA	NA	NA
SQG53426.1|191948_192488_+	biotin transporter	NA	NA	NA	NA	NA
SQG53430.1|192655_193789_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG53433.1|193793_193904_+	hupothetical protein	NA	NA	NA	NA	NA
SQG53436.1|193953_194733_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQG53441.1|194732_195248_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQG53446.1|195861_197082_-	S-layer protein	NA	NA	NA	NA	NA
SQG53449.1|197493_198198_+	exotoxin G	NA	NA	NA	NA	NA
SQG53452.1|198286_198406_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG53455.1|198657_200007_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQG53458.1|202418_203552_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	342054	348089	1795272		Streptococcus_phage(100.0%)	8	NA	NA
SQG54008.1|342054_342690_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
SQG54010.1|342707_343583_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	1.0e-62
SQG54012.1|344246_344570_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQG54016.1|344574_345438_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
SQG54017.1|345464_345857_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG54019.1|345903_346533_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQG54021.1|346831_347188_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQG54023.1|347261_348089_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
>prophage 4
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	620503	631106	1795272		Streptococcus_phage(57.14%)	9	NA	NA
SQG54278.1|620503_622714_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
SQG54279.1|622821_623985_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQG54280.1|623981_624668_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQG54281.1|624761_625928_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQG54282.1|625988_626330_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
SQG54283.1|626550_627903_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	5.9e-30
SQG54284.1|627990_629259_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQG54285.1|629288_629729_-	membrane protein	NA	NA	NA	NA	NA
SQG54286.1|629963_631106_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.5	7.7e-23
>prophage 5
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	658063	691728	1795272	protease,head,transposase,tRNA	Bacillus_phage(33.33%)	32	NA	NA
SQG54311.1|658063_658783_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQG54312.1|658794_659787_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQG54313.1|659964_661023_+	regulatory protein	NA	NA	NA	NA	NA
SQG54314.1|661035_661959_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQG54315.1|662259_662928_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQG54316.1|662924_663836_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQG54317.1|663832_665779_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQG54318.1|665877_666471_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQG54319.1|666622_667330_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQG54320.1|667386_667605_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	54.4	1.7e-08
SQG54321.1|668286_669312_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQG54322.1|669811_669988_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQG54323.1|670215_670596_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG54324.1|670595_671444_+	degV family protein	NA	NA	NA	NA	NA
SQG54325.1|671568_672777_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQG54326.1|672773_674651_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQG54327.1|675540_675951_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQG54328.1|676032_678045_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQG54329.1|678264_678915_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQG54330.1|678917_679586_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	1.8e-19
SQG54331.1|679594_680827_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQG54332.1|681130_682009_+	mevalonate kinase	NA	NA	NA	NA	NA
SQG54333.1|681990_682935_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQG54334.1|682927_683941_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQG54335.1|683927_684917_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQG54336.1|685079_685943_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG54337.1|686114_687392_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQG54338.1|687378_688554_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQG54339.1|688762_689602_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	4.9e-83
SQG54340.1|689681_690179_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQG54341.1|690198_690369_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQG54342.1|690498_691728_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	2.3e-137
>prophage 6
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	722533	775226	1795272	tail,tRNA,terminase,integrase,portal,head	Streptococcus_phage(39.62%)	69	736832:736880	776323:776371
SQG54372.1|722533_723433_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQG54373.1|723505_724744_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQG54374.1|724736_725372_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQG54375.1|725386_726316_+	ribonuclease Z	NA	NA	NA	NA	NA
SQG54376.1|726315_727080_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQG54377.1|727076_729287_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.2	3.9e-71
SQG54378.1|729437_729956_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
SQG54379.1|730036_730720_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.9e-09
SQG54380.1|730716_731373_+	endonuclease III	NA	NA	NA	NA	NA
SQG54381.1|731444_732131_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQG54382.1|732120_732909_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG54383.1|732943_734050_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQG54384.1|734107_734977_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	2.7e-100
SQG54385.1|734976_735570_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQG54386.1|735813_736854_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.5e-68
736832:736880	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
SQG54387.1|736947_738087_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	3.4e-119
SQG54388.1|738222_738903_-	Uncharacterised protein	NA	A0A097PAS7	Streptococcus_pyogenes_phage	88.3	4.7e-76
SQG54389.1|738940_739696_-	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	64.5	2.2e-82
SQG54390.1|739855_740083_+	phage protein	NA	A0A141E1R7	Streptococcus_phage	60.0	4.5e-15
SQG54391.1|740133_740859_+	phage antirepressor protein	NA	A0A141E1D3	Streptococcus_phage	72.4	1.8e-94
SQG54392.1|740890_741157_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQG54393.1|741091_741898_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	81.7	2.3e-122
SQG54394.1|742039_742276_-	phage protein	NA	NA	NA	NA	NA
SQG54395.1|742418_742730_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.4	4.1e-43
SQG54396.1|742731_742917_+	phage protein	NA	Q938N3	Temperate_phage	90.2	1.2e-21
SQG54397.1|743399_743786_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
SQG54398.1|743766_744000_+	phage protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
SQG54399.1|743996_744137_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQG54400.1|744145_744352_+	phage protein	NA	NA	NA	NA	NA
SQG54401.1|744407_744737_+	phage protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
SQG54402.1|744739_745531_+	phage protein RecT family	NA	A0A1S5SFP4	Streptococcus_phage	82.0	1.4e-119
SQG54403.1|745540_746569_+	phage protein	NA	E8ZD61	Streptococcus_phage	65.6	7.2e-121
SQG54404.1|746764_747103_+	phage protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
SQG54405.1|747099_747612_+	phage protein	NA	Q708P9	Streptococcus_phage	73.2	2.9e-62
SQG54406.1|747598_747793_+	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.7e-11
SQG54407.1|747789_748035_+	phage protein	NA	A0A1P8VVL2	Streptococcus_phage	92.5	4.5e-21
SQG54408.1|748086_748548_+	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	60.1	4.5e-46
SQG54409.1|748544_748715_+	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	98.2	8.4e-27
SQG54410.1|748997_749438_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	4.2e-78
SQG54411.1|749752_750667_+	phage protein	NA	NA	NA	NA	NA
SQG54412.1|750685_751147_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG54413.1|751174_751657_+|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
SQG54414.1|751634_752924_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.5e-184
SQG54415.1|752935_754438_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
SQG54416.1|754418_755981_+	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	1.6e-47
SQG54417.1|755984_756170_+	phage protein	NA	NA	NA	NA	NA
SQG54418.1|756555_756822_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.7	1.7e-26
SQG54419.1|756965_757499_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQG54420.1|757508_757889_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	36.3	6.4e-06
SQG54421.1|757891_758941_+|head	phage head protein	head	B0YL60	Streptococcus_virus	56.9	2.6e-105
SQG54422.1|758952_759219_+	phage protein	NA	NA	NA	NA	NA
SQG54423.1|759230_759584_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	7.4e-25
SQG54424.1|759580_759889_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQG54425.1|759878_760235_+	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
SQG54426.1|760231_760621_+	phage protein	NA	Q38611	Lactococcus_phage	69.0	1.6e-44
SQG54427.1|760630_761284_+|tail	major tail protein	tail	D7RWD5	Brochothrix_phage	53.3	6.6e-43
SQG54428.1|761343_761697_+	phage protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
SQG54429.1|761738_762068_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
SQG54430.1|762082_765718_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQG54431.1|765750_766530_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.6	9.2e-68
SQG54432.1|766526_768578_+	phage protein	NA	A3F656	Streptococcus_phage	83.8	0.0e+00
SQG54433.1|768574_769696_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	73.3	1.9e-127
SQG54434.1|769708_771622_+	phage infection protein	NA	Q938J9	Temperate_phage	61.3	2.7e-92
SQG54435.1|771635_771797_+	phage protein	NA	NA	NA	NA	NA
SQG54436.1|771799_772411_+	phage protein	NA	Q938J7	Temperate_phage	91.1	5.7e-81
SQG54437.1|772421_772718_+	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQG54438.1|772714_772900_+	phage protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
SQG54439.1|773153_774275_+	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	J7KIY0	Streptococcus_phage	93.0	2.4e-202
SQG54440.1|774548_775226_+	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.4	2.4e-27
776323:776371	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
>prophage 7
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	1047531	1090028	1795272	integrase,transposase,tRNA	Enterococcus_phage(23.08%)	42	1069312:1069327	1095499:1095514
SQG54697.1|1047531_1048047_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG54698.1|1048067_1048874_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	4.1e-63
SQG54699.1|1048922_1049654_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQG54700.1|1049767_1050133_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQG54701.1|1050252_1051473_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQG54702.1|1051846_1053331_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG54703.1|1053435_1053837_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQG54704.1|1053921_1054161_-	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.2	4.4e-37
SQG54705.1|1054232_1054400_-	phosphorylase Pnp/Udp family protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	94.4	2.8e-22
SQG54706.1|1054623_1054716_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQG54707.1|1054754_1056110_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.2	3.6e-253
SQG54708.1|1056191_1057643_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQG54709.1|1057850_1058342_-	shikimate kinase	NA	NA	NA	NA	NA
SQG54710.1|1058334_1059618_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQG54711.1|1059728_1060694_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQG54712.1|1060695_1061556_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQG54713.1|1061571_1062855_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQG54714.1|1062863_1063406_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQG54715.1|1063643_1064213_-	Protein G-related alpha 2 macroglobulin-binding protein GraB	NA	NA	NA	NA	NA
SQG54716.1|1064570_1065830_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQG54717.1|1066003_1067200_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQG54718.1|1067735_1070114_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
1069312:1069327	attL	TTTTCTGCTTTTTTAG	NA	NA	NA	NA
SQG54719.1|1070317_1071259_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQG54720.1|1071578_1072712_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG54721.1|1072981_1074667_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.7e-47
SQG54722.1|1074666_1075164_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQG54723.1|1075308_1076118_+	membrane protein	NA	NA	NA	NA	NA
SQG54724.1|1076170_1076434_-	membrane protein	NA	NA	NA	NA	NA
SQG54725.1|1076513_1077140_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQG54726.1|1077237_1078323_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQG54727.1|1078433_1079708_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQG54728.1|1079803_1081231_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQG54729.1|1081415_1083149_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQG54730.1|1083153_1083417_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQG54731.1|1083809_1084028_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQG54732.1|1084047_1086207_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.4	2.3e-262
SQG54733.1|1086224_1086494_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG54734.1|1086528_1087488_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQG54735.1|1087462_1088776_+	chloride channel protein	NA	NA	NA	NA	NA
SQG54736.1|1088871_1089165_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG54737.1|1089197_1089767_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	39.0	2.6e-27
SQG54738.1|1089806_1090028_+|transposase	transposase	transposase	U5P429	Shigella_phage	44.3	2.5e-10
1095499:1095514	attR	TTTTCTGCTTTTTTAG	NA	NA	NA	NA
>prophage 8
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	1331822	1381491	1795272	tail,tRNA,terminase,integrase,portal	Streptococcus_phage(80.0%)	64	1337286:1337302	1378087:1378103
SQG54956.1|1331822_1334684_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
SQG54957.1|1334703_1335006_-	ribosomal protein in infB 5'region	NA	NA	NA	NA	NA
SQG54958.1|1334998_1335295_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQG54959.1|1335310_1336456_-	transcription elongation factor	NA	NA	NA	NA	NA
SQG54960.1|1336642_1337179_-	ribosome maturation factor rimP	NA	NA	NA	NA	NA
1337286:1337302	attL	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
SQG54961.1|1337423_1337603_-	paratox	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
SQG54962.1|1337841_1339014_+	DNA/RNA non-specific endonuclease family protein	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
SQG54963.1|1339129_1340326_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q938J4	Temperate_phage	82.2	6.1e-196
SQG54964.1|1340322_1340433_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	88.9	8.7e-09
SQG54965.1|1340436_1340622_-	phage protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
SQG54966.1|1340618_1340918_-	phage protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
SQG54967.1|1340928_1341549_-	phage protein	NA	A3F662	Streptococcus_phage	88.8	8.3e-80
SQG54968.1|1341551_1341713_-	phage protein	NA	NA	NA	NA	NA
SQG54969.1|1341721_1343629_-	gp58-like family protein	NA	Q938J9	Temperate_phage	60.9	1.3e-134
SQG54970.1|1343639_1344275_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
SQG54971.1|1344274_1345330_-	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
SQG54972.1|1345326_1347309_-	phage protein	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
SQG54973.1|1347318_1348161_-	phage protein	NA	A7J2A6	Streptococcus_phage	99.6	8.5e-160
SQG54974.1|1348172_1352555_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	76.4	3.2e-226
SQG54975.1|1352569_1352803_-	phage protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
SQG54976.1|1352877_1353333_-	phage protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
SQG54977.1|1353386_1353986_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
SQG54978.1|1353997_1354357_-	phage protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
SQG54979.1|1354360_1354705_-	phage protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
SQG54980.1|1354701_1354980_-	phage protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
SQG54981.1|1354990_1355347_-	phage protein	NA	A7J298	Streptococcus_phage	97.5	2.8e-56
SQG54982.1|1355358_1356246_-	phage protein	NA	A7J297	Streptococcus_phage	99.7	3.6e-161
SQG54983.1|1356258_1356828_-	phage protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
SQG54984.1|1356983_1357250_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
SQG54985.1|1357252_1357369_-	phage membrane protein	NA	A7J294	Streptococcus_phage	97.4	3.0e-07
SQG54986.1|1357471_1358917_-	phage protein	NA	A7J293	Streptococcus_phage	92.9	3.4e-257
SQG54987.1|1358876_1360409_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
SQG54988.1|1360424_1361702_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
SQG54989.1|1361691_1362144_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQG54990.1|1362233_1362650_-	phage protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
SQG54991.1|1362646_1362838_-	phage protein	NA	NA	NA	NA	NA
SQG54992.1|1362827_1363679_-	DNA methylase family protein	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
SQG54993.1|1363687_1363954_-	phage protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
SQG54994.1|1363950_1364118_-	phage protein	NA	A7J285	Streptococcus_phage	94.5	1.9e-23
SQG54995.1|1364118_1365441_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
SQG54996.1|1365437_1365713_-	phage protein	NA	A7J283	Streptococcus_phage	100.0	9.1e-47
SQG54997.1|1366099_1368484_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.4	4.1e-276
SQG54998.1|1368488_1370411_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
SQG54999.1|1370453_1371011_-	phage protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
SQG55000.1|1371021_1371420_-	phage protein	NA	NA	NA	NA	NA
SQG55001.1|1371423_1372578_-	phage protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
SQG55002.1|1372577_1372877_-	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQG55003.1|1372964_1373168_-	phage protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
SQG55004.1|1373177_1373318_-	phage protein	NA	NA	NA	NA	NA
SQG55005.1|1373314_1373701_-	phage protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
SQG55006.1|1373697_1373901_-	phage protein	NA	NA	NA	NA	NA
SQG55007.1|1373893_1374064_-	phage protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
SQG55008.1|1374060_1374336_-	phage protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
SQG55009.1|1374397_1374613_-	phage protein	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
SQG55010.1|1374660_1375074_+	phage protein	NA	NA	NA	NA	NA
SQG55011.1|1375054_1375210_-	phage protein	NA	NA	NA	NA	NA
SQG55012.1|1375535_1375886_+	Cro/CI family phage transcriptional regulator	NA	A7J269	Streptococcus_phage	73.5	5.6e-41
SQG55013.1|1375899_1376283_+	phage protein	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
SQG55014.1|1376293_1376845_+	phage protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
SQG55015.1|1376961_1378041_+|integrase	integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
SQG55016.1|1378238_1378874_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
1378087:1378103	attR	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
SQG55017.1|1378873_1379665_-	phosphotransferase	NA	NA	NA	NA	NA
SQG55018.1|1379728_1380763_-	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
SQG55019.1|1380765_1381491_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
>prophage 9
LS483401	Streptococcus pyogenes strain NCTC10085 genome assembly, chromosome: 1	1795272	1562636	1633140	1795272	transposase,protease,bacteriocin,tRNA	Streptococcus_phage(15.79%)	56	NA	NA
SQG55188.1|1562636_1563980_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	29.9	2.5e-52
SQG55189.1|1564007_1564238_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG55190.1|1564716_1565298_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQG55191.1|1565306_1566059_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQG55192.1|1566051_1568184_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQG55193.1|1568464_1569193_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQG55194.1|1569205_1570585_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQG55195.1|1570611_1570896_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQG55196.1|1570888_1572949_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQG55197.1|1573300_1573570_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQG55198.1|1573745_1573946_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG55199.1|1574455_1575070_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQG55200.1|1575102_1575645_-	oxidoreductase	NA	NA	NA	NA	NA
SQG55201.1|1575776_1576205_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQG55202.1|1576314_1580712_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQG55203.1|1580965_1582822_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQG55204.1|1583019_1584279_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQG55205.1|1584351_1585146_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQG55206.1|1585158_1585908_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	7.3e-22
SQG55207.1|1586126_1586492_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQG55208.1|1586607_1586955_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQG55209.1|1587096_1590594_-	pullulanase	NA	NA	NA	NA	NA
SQG55210.1|1590791_1592405_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQG55211.1|1592533_1593667_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	1.1e-24
SQG55212.1|1593964_1594813_-	leucine rich protein	NA	NA	NA	NA	NA
SQG55213.1|1595153_1596476_+	streptokinase	NA	NA	NA	NA	NA
SQG55214.1|1596573_1597017_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQG55215.1|1597031_1599251_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	39.5	8.9e-07
SQG55216.1|1599502_1600780_-	collagen-like surface protein	NA	NA	NA	NA	NA
SQG55217.1|1601161_1601623_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQG55218.1|1602017_1602836_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SQG55219.1|1602918_1605105_-	PTS system, glucose-specific II ABC component	NA	A0A2I7SAJ6	Vibrio_phage	43.0	1.5e-06
SQG55220.1|1605461_1606211_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQG55221.1|1606210_1607164_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQG55222.1|1607234_1607705_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQG55223.1|1608398_1609262_+|transposase	transposase	transposase	NA	NA	NA	NA
SQG55224.1|1609405_1609747_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG55225.1|1610543_1612301_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.7	8.2e-40
SQG55226.1|1612333_1612900_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQG55227.1|1612932_1614201_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQG55228.1|1614699_1615140_+	acetyltransferase	NA	NA	NA	NA	NA
SQG55229.1|1615194_1615665_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQG55230.1|1615949_1616651_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQG55231.1|1616977_1617202_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQG55232.1|1617380_1619009_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQG55233.1|1619121_1620099_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQG55234.1|1620095_1620917_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQG55235.1|1620928_1621732_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQG55236.1|1621715_1622342_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQG55237.1|1622424_1622625_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQG55238.1|1622793_1625265_-	histidine triad protein	NA	NA	NA	NA	NA
SQG55239.1|1625277_1626198_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQG55240.1|1626375_1627509_-|transposase	transposase	transposase	NA	NA	NA	NA
SQG55241.1|1627759_1631263_-	C5A peptidase	NA	NA	NA	NA	NA
SQG55242.1|1631696_1632356_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
SQG55243.1|1632333_1633140_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.6	3.9e-130
