The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1975601	111988	160164	1975601	holin,tRNA,capsid,terminase,tail	Streptococcus_phage(79.55%)	58	NA	NA
SQG45433.1|111988_113245_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	39.2	9.9e-72
SQG45434.1|113351_115655_+	penicillin-binding protein 1B	NA	NA	NA	NA	NA
SQG45435.1|115918_119485_+	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	25.9	2.4e-38
SQG45436.1|119576_123215_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.4	1.4e-65
SQG45437.1|123335_123701_+	dipicolinate synthase	NA	NA	NA	NA	NA
SQG45438.1|123773_124715_+	competence protein	NA	NA	NA	NA	NA
SQG45439.1|124779_125682_+	competence protein	NA	NA	NA	NA	NA
SQG45440.1|125682_125805_+	competence protein	NA	NA	NA	NA	NA
SQG45441.1|125762_127208_-	site-specific recombinase/resolvase	NA	E8ZDY7	Streptococcus_phage	72.8	4.0e-202
SQG45442.1|127357_127807_-	Host cell surface-exposed lipoprotein	NA	A0A097BY93	Leuconostoc_phage	51.7	8.0e-08
SQG45443.1|127859_128234_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	67.7	1.9e-47
SQG45444.1|128220_128583_-	XRE family transcriptional regulator	NA	M1PRN5	Streptococcus_phage	66.1	3.6e-35
SQG45445.1|128773_128974_+	XRE family transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	66.2	1.7e-18
SQG45446.1|129020_129746_+	phage antirepressor protein	NA	Q938N5	Temperate_phage	79.2	6.9e-110
SQG45447.1|129757_130099_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45448.1|130099_130312_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45449.1|130709_130868_+	Uncharacterised protein	NA	A0A141E1D2	Streptococcus_phage	73.1	2.8e-16
SQG45450.1|131394_131676_+	Uncharacterised protein	NA	A0A1S5SA04	Streptococcus_phage	46.7	1.8e-13
SQG45451.1|131675_131936_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45452.1|131948_132080_+	Uncharacterised protein	NA	A0A1S5SA31	Streptococcus_phage	69.0	4.2e-10
SQG45453.1|132083_132263_+	Uncharacterised protein	NA	A0A1S5SAF4	Streptococcus_phage	64.4	3.0e-14
SQG45454.1|132259_133033_+	phage protein RecT family	NA	A0A1S5SFP4	Streptococcus_phage	77.4	1.8e-108
SQG45455.1|133043_134072_+	phage protein	NA	A0A1S5SFI4	Streptococcus_phage	66.5	1.4e-116
SQG45456.1|134074_134344_+	Uncharacterised protein	NA	M1Q1G3	Streptococcus_phage	96.6	4.0e-47
SQG45457.1|134353_134677_+	Uncharacterised protein	NA	M1PS51	Streptococcus_phage	52.6	2.8e-18
SQG45458.1|134673_134853_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45459.1|135322_135664_+	phage protein	NA	M1PKX3	Streptococcus_phage	41.1	1.4e-12
SQG45460.1|135663_136092_+	holliday junction resolvase	NA	A0A141E1Z1	Streptococcus_phage	91.4	1.9e-70
SQG45461.1|136082_136397_+	phage protein	NA	A1EAD7	Streptococcus_phage	73.6	5.6e-32
SQG45462.1|136396_136846_+	phage protein	NA	A0A1C9LX52	Streptococcus_phage	54.2	8.5e-34
SQG45463.1|136826_137072_+	Uncharacterised protein	NA	W6LP69	Streptococcus_phage	50.0	3.3e-08
SQG45464.1|137068_137383_+	Uncharacterised protein	NA	A0A1S5S7Z8	Streptococcus_phage	49.5	1.6e-18
SQG45465.1|137457_137874_+	phage protein	NA	A0A141E1Y4	Streptococcus_phage	81.2	1.3e-55
SQG45466.1|138033_138765_+	Uncharacterized conserved protein	NA	A0A1L2JY44	Aeribacillus_phage	37.6	1.6e-26
SQG45467.1|138733_140032_+|terminase	putative phage terminase large subunit	terminase	A0A286QNX6	Streptococcus_phage	65.1	2.5e-163
SQG45468.1|140094_141555_+|capsid	Minor capsid protein	capsid	A0A286QNN2	Streptococcus_phage	72.2	5.2e-205
SQG45469.1|141559_143182_+|capsid	phage minor capsid 2 family protein	capsid	A0A286QMS2	Streptococcus_phage	70.9	3.8e-164
SQG45470.1|143178_143370_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45471.1|143420_143693_+	phage protein	NA	NA	NA	NA	NA
SQG45472.1|143860_144424_+	putative scaffolding protein	NA	A0A2H4JBH4	uncultured_Caudovirales_phage	66.5	1.0e-52
SQG45473.1|144444_145314_+|capsid	major capsid protein	capsid	D2J061	Enterococcus_phage	65.4	3.5e-100
SQG45474.1|145327_145486_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45475.1|145491_145692_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45476.1|145712_146117_+	phage protein	NA	C5IUJ7	Streptococcus_phage	54.6	2.9e-33
SQG45477.1|146103_146445_+	phage protein	NA	A0A286QMS6	Streptococcus_phage	64.5	1.6e-40
SQG45478.1|146444_146807_+	phage protein	NA	A0A286QMS1	Streptococcus_phage	67.2	2.9e-40
SQG45479.1|146803_147205_+|capsid	minor capsid protein	capsid	A0A2H4JHL9	uncultured_Caudovirales_phage	61.9	4.4e-42
SQG45480.1|147205_147667_+|tail	major tail shaft protein	tail	A0A1P8VVM4	Streptococcus_phage	51.3	2.1e-35
SQG45481.1|147729_148098_+	Uncharacterised protein	NA	A0A286QNZ4	Streptococcus_phage	51.2	1.7e-24
SQG45482.1|148099_148699_+	phage protein	NA	A0A286QMS7	Streptococcus_phage	46.9	6.2e-48
SQG45483.1|148714_152092_+	phage protein	NA	A0A286QN99	Streptococcus_phage	36.8	5.5e-08
SQG45484.1|152088_153531_+|tail	tail protein	tail	K4JTI1	Streptococcus_phage	32.3	6.9e-61
SQG45485.1|153530_156311_+	prophage LambdaSa1, N-acetylmuramoyl-L-alanine amidase, family 4	NA	A0A286QQK2	Streptococcus_phage	33.2	2.2e-119
SQG45486.1|156324_158334_+	phage structural protein	NA	A0A286QNJ5	Streptococcus_phage	57.5	1.7e-203
SQG45487.1|158346_158745_+	Protein of uncharacterised function (DUF1366)	NA	A0A1P8VVN2	Streptococcus_phage	35.7	4.2e-08
SQG45488.1|158744_158966_+	Uncharacterised protein	NA	A0A1X9I5T1	Streptococcus_phage	61.7	2.8e-14
SQG45489.1|158978_159449_+|holin	holin protein	holin	NA	NA	NA	NA
SQG45490.1|159450_160164_+	lysin	NA	Q2I7P1	Streptococcus_phage	84.0	1.7e-113
>prophage 2
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1975601	193045	201317	1975601		Streptococcus_phage(66.67%)	10	NA	NA
SQG45527.1|193045_193417_-	Death on curing protein	NA	D0R0D2	Streptococcus_phage	64.2	3.5e-41
SQG45528.1|193413_193671_-	Phd_YefM	NA	A0A1X9I6A0	Streptococcus_phage	71.8	2.2e-26
SQG45529.1|193862_195113_-	tellurite resistance protein	NA	M1PLC8	Streptococcus_phage	65.9	8.2e-127
SQG45530.1|195121_195982_-	membrane protein	NA	M1PFV6	Streptococcus_phage	37.8	1.5e-26
SQG45531.1|196336_197629_+	adenylosuccinate synthetase	NA	G5CQQ4	Megavirus	36.7	8.6e-71
SQG45532.1|197752_197926_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45533.1|198007_198364_+	Lin0147	NA	NA	NA	NA	NA
SQG45534.1|198590_199634_+	basic membrane protein	NA	NA	NA	NA	NA
SQG45535.1|199673_200447_-	pyruvate formate-lyase activating enzyme	NA	NA	NA	NA	NA
SQG45536.1|200573_201317_+	DeoR family regulatory protein	NA	A0A077SK06	Escherichia_phage	26.0	5.4e-17
>prophage 3
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1975601	480736	495392	1975601		Streptococcus_phage(85.71%)	20	NA	NA
SQG45818.1|480736_481501_+	branched-chain amino acid transport ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.3e-17
SQG45819.1|481500_482211_+	branched-chain amino acid transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.7	1.1e-16
SQG45820.1|482280_482943_+	5'-AMP-activated protein kinase subunit gamma-3	NA	M1NSC5	Streptococcus_phage	57.9	3.5e-60
SQG45821.1|483026_483662_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.8	2.3e-69
SQG45822.1|483677_484553_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	53.2	5.8e-79
SQG45823.1|484549_485350_+	stage 0 sporulation protein	NA	NA	NA	NA	NA
SQG45824.1|485339_485693_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	57.5	2.3e-26
SQG45825.1|485670_486534_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	72.4	8.5e-115
SQG45826.1|486659_487055_+	membrane protein	NA	NA	NA	NA	NA
SQG45827.1|487087_487720_-	CutC family protein	NA	NA	NA	NA	NA
SQG45828.1|487843_488938_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	76.6	3.4e-161
SQG45829.1|488953_489502_+	GNAT family acetyltransferase	NA	M1PSC3	Streptococcus_phage	53.9	2.6e-48
SQG45830.1|489532_490735_+	D-isomer specific 2-hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	77.6	4.7e-172
SQG45831.1|490783_491323_+	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	54.2	5.1e-41
SQG45832.1|491262_491616_+	ArsC family protein	NA	M1PLC0	Streptococcus_phage	60.9	1.6e-35
SQG45833.1|491648_492551_-	cation efflux family protein	NA	M1Q1N9	Streptococcus_phage	48.3	2.9e-73
SQG45834.1|492948_493365_-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein	NA	NA	NA	NA	NA
SQG45835.1|493386_493761_-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein	NA	NA	NA	NA	NA
SQG45836.1|493900_494524_-	DNA alkylation repair enzyme	NA	NA	NA	NA	NA
SQG45837.1|494564_495392_-	exodeoxyribonuclease	NA	M1PSC0	Streptococcus_phage	78.0	3.3e-124
>prophage 4
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1975601	499299	535927	1975601	tRNA,protease,bacteriocin	Staphylococcus_phage(25.0%)	46	NA	NA
SQG45842.1|499299_501306_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.3	5.6e-85
SQG45843.1|501519_501702_+	membrane protein	NA	NA	NA	NA	NA
SQG45844.1|501667_502201_+|tRNA	lysyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQG45845.1|502362_503706_+	branched-chain amino acid transport system carrier protein	NA	NA	NA	NA	NA
SQG45846.1|503813_504146_-	signal peptide	NA	NA	NA	NA	NA
SQG45847.1|504344_504581_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQG45848.1|504573_505272_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SQG45849.1|505368_506331_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SQG45850.1|506461_507838_+	bifunctional GlmU protein	NA	A0A2K9L4K9	Tupanvirus	38.1	2.4e-34
SQG45851.1|507858_508416_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQG45852.1|508412_508673_+	membrane protein	NA	NA	NA	NA	NA
SQG45853.1|508688_509381_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
SQG45854.1|509415_510063_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
SQG45855.1|510208_511141_+	extracellular manganese-binding protein	NA	NA	NA	NA	NA
SQG45856.1|511200_511923_+	metal cation ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	2.9e-15
SQG45857.1|511926_512766_+	metal cation ABC transporter membrane protein	NA	NA	NA	NA	NA
SQG45858.1|513273_514086_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	39.0	1.8e-21
SQG45859.1|514181_516590_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	51.7	3.2e-87
SQG45860.1|516618_516975_-	membrane protein	NA	NA	NA	NA	NA
SQG45861.1|517219_517645_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQG45862.1|517750_518440_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQG45863.1|518579_519308_+	uridylate kinase	NA	NA	NA	NA	NA
SQG45864.1|519343_519901_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQG45865.1|520015_520870_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQG45866.1|520953_521463_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
SQG45867.1|521459_521675_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQG45868.1|521855_522935_+	PhoH-like protein	NA	W8D063	Erwinia_phage	47.5	7.3e-47
SQG45869.1|522979_523555_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQG45870.1|523647_524148_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
SQG45871.1|524125_524530_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQG45872.1|524551_525451_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQG45873.1|525861_526248_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45874.1|526306_527098_+	membrane protein	NA	NA	NA	NA	NA
SQG45875.1|527084_527738_+	membrane protein	NA	NA	NA	NA	NA
SQG45876.1|527700_528330_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	3.5e-17
SQG45877.1|528757_529498_+	response regulator protein	NA	NA	NA	NA	NA
SQG45878.1|529628_530840_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQG45879.1|530849_530996_-	COMC family	NA	NA	NA	NA	NA
SQG45880.1|531031_533185_-|bacteriocin	bacteriocin transport/processing ATP-binding protein	bacteriocin	W8CYL7	Bacillus_phage	28.8	9.1e-41
SQG45881.1|533442_533649_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45882.1|534267_534492_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45883.1|534502_534703_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45884.1|534699_534876_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQG45885.1|534896_535208_+	membrane protein	NA	NA	NA	NA	NA
SQG45886.1|535379_535625_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45887.1|535627_535927_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 5
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1975601	982889	991143	1975601		Bacillus_virus(33.33%)	8	NA	NA
SQG46320.1|982889_983810_+	pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	34.8	2.1e-31
SQG46321.1|983878_984112_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
SQG46322.1|984188_985499_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	29.2	2.2e-05
SQG46323.1|985491_986166_-	response regulator protein	NA	W8CYM9	Bacillus_phage	33.2	5.2e-27
SQG46324.1|986287_988825_-	lysyl-aminopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	25.1	2.2e-70
SQG46325.1|988895_989549_-	phosphate transport system protein	NA	NA	NA	NA	NA
SQG46326.1|989568_990327_-	phosphate import ATP-binding protein 1	NA	G3M9Y6	Bacillus_virus	30.5	6.5e-18
SQG46327.1|990339_991143_-	Phosphate transport ATP-binding protein pstB2	NA	G3M9Y6	Bacillus_virus	31.8	5.3e-18
