assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475335.1_42912_D01	LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1	365518-365636	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	TCCCACGCGTGTGCGAATGCGTGGGCGAATT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|184aa|up_6|LS483520.1_359825_360377_+,NA|65aa|up_5|LS483520.1_360398_360593_+,NA|163aa|up_4|LS483520.1_361355_361844_+,NA|84aa|up_3|LS483520.1_362423_362675_+,NA|238aa|up_2|LS483520.1_362768_363482_-,NA|38aa|up_1|LS483520.1_363558_363672_+,NA|84aa|down_6|LS483520.1_371456_371708_+,NA|114aa|down_8|LS483520.1_372573_372915_+	NA|163aa|up_9|LS483520.1_355767_356256_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_8|LS483520.1_356222_358403_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_7|LS483520.1_358609_359362_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|184aa|up_6|LS483520.1_359825_360377_+	NA	NA|65aa|up_5|LS483520.1_360398_360593_+	NA	NA|163aa|up_4|LS483520.1_361355_361844_+	NA	NA|84aa|up_3|LS483520.1_362423_362675_+	NA	NA|238aa|up_2|LS483520.1_362768_363482_-	NA	NA|38aa|up_1|LS483520.1_363558_363672_+	NA	NA|323aa|up_0|LS483520.1_363992_364961_-	pfam18740, EC042_2821, EC042_2821-lke REase	NA|79aa|down_0|LS483520.1_365684_365921_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|LS483520.1_365913_366612_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|LS483520.1_366687_367647_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|LS483520.1_367979_369317_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|LS483520.1_369489_370872_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|LS483520.1_370902_371457_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|LS483520.1_371456_371708_+	NA	NA|232aa|down_7|LS483520.1_371727_372423_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|LS483520.1_372573_372915_+	NA	NA|216aa|down_9|LS483520.1_373015_373663_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCA_900475335.1_42912_D01	LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	2	801662-802489	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-B,Type II-A,Type II-C	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	3	3	801698-801727|801896-801925|802358-802387	LS483520.1_1234624-1234595|LS483520.1_1214690-1214661|LS483520.1_1211606-1211577	II-A:II-A:II-A	3,12,12	12	TypeII-B,TypeII-A,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|LS483520.1_791122_791764_+,NA	NA|452aa|up_9|LS483520.1_789643_790999_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|LS483520.1_791122_791764_+	NA	NA|399aa|up_7|LS483520.1_791760_792957_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|LS483520.1_792966_793719_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|LS483520.1_793718_794483_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|LS483520.1_794482_795115_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|LS483520.1_795593_799700_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|LS483520.1_799699_800569_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|104aa|up_1|LS483520.1_800595_800907_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|LS483520.1_800896_801559_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|LS483520.1_803131_804964_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|454aa|down_1|LS483520.1_805303_806665_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|LS483520.1_806850_807288_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|LS483520.1_807417_808437_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|LS483520.1_808643_809069_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|LS483520.1_809087_809579_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|LS483520.1_809595_810405_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|LS483520.1_810401_811229_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|LS483520.1_811364_813014_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|LS483520.1_813017_813806_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCA_900475335.1_42912_D01	LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	3	1000664-1000765	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|LS483520.1_1008595_1009381_+	NA|83aa|up_9|LS483520.1_988379_988628_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|LS483520.1_988990_991309_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|LS483520.1_991838_993161_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|LS483520.1_993280_994516_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|LS483520.1_994885_995659_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|LS483520.1_996028_996865_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|LS483520.1_996880_997510_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|LS483520.1_997519_998161_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|LS483520.1_998267_998603_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|LS483520.1_998798_1000613_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|LS483520.1_1000788_1001346_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|LS483520.1_1001563_1003066_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|LS483520.1_1003128_1004142_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|LS483520.1_1004221_1007332_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|LS483520.1_1007516_1007888_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|LS483520.1_1007887_1008586_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|LS483520.1_1008595_1009381_+	NA	NA|205aa|down_7|LS483520.1_1009507_1010122_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|LS483520.1_1010862_1011483_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|LS483520.1_1011739_1014004_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCA_900475335.1_42912_D01	LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	4	1251283-1251645	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,32	2	2	1251581-1251613|1251582-1251614	LS483520.1_501234-501266|LS483520.1_501234-501266	I-C:I-C:I-C	5,5,5	5	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|64aa|up_8|LS483520.1_1244618_1244810_-,NA|50aa|up_7|LS483520.1_1245115_1245265_+,NA|174aa|up_4|LS483520.1_1246722_1247244_+,NA|188aa|down_9|LS483520.1_1262616_1263180_-	NA|243aa|up_9|LS483520.1_1243879_1244608_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_8|LS483520.1_1244618_1244810_-	NA	NA|50aa|up_7|LS483520.1_1245115_1245265_+	NA	NA|120aa|up_6|LS483520.1_1245958_1246318_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|LS483520.1_1246331_1246712_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|LS483520.1_1246722_1247244_+	NA	NA|366aa|up_3|LS483520.1_1247419_1248517_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|LS483520.1_1248627_1249734_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|LS483520.1_1249776_1250400_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|LS483520.1_1250412_1251123_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|LS483520.1_1251793_1252087_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|192aa|down_1|LS483520.1_1252097_1252673_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas1|139aa|down_2|LS483520.1_1252706_1253123_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_3|LS483520.1_1253119_1253794_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_4|LS483520.1_1253795_1254644_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_5|LS483520.1_1254648_1256544_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|251aa|down_6|LS483520.1_1256519_1257272_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_7|LS483520.1_1257404_1259813_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_8|LS483520.1_1259966_1262615_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_9|LS483520.1_1262616_1263180_-	NA
GCA_900475335.1_42912_D01	LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	5	1787176-1787272	5	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|LS483520.1_1782281_1782455_-,NA|538aa|up_8|LS483520.1_1782741_1784355_-,NA|174aa|up_7|LS483520.1_1784344_1784866_-,NA|89aa|up_6|LS483520.1_1784875_1785142_-,NA|65aa|up_5|LS483520.1_1785152_1785347_-,NA|111aa|up_4|LS483520.1_1785343_1785676_-,NA|61aa|up_3|LS483520.1_1785687_1785870_-,NA|81aa|up_2|LS483520.1_1786090_1786333_-,NA	NA|58aa|up_9|LS483520.1_1782281_1782455_-	NA	NA|538aa|up_8|LS483520.1_1782741_1784355_-	NA	NA|174aa|up_7|LS483520.1_1784344_1784866_-	NA	NA|89aa|up_6|LS483520.1_1784875_1785142_-	NA	NA|65aa|up_5|LS483520.1_1785152_1785347_-	NA	NA|111aa|up_4|LS483520.1_1785343_1785676_-	NA	NA|61aa|up_3|LS483520.1_1785687_1785870_-	NA	NA|81aa|up_2|LS483520.1_1786090_1786333_-	NA	NA|189aa|up_1|LS483520.1_1786389_1786956_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|LS483520.1_1786971_1787160_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|LS483520.1_1787328_1787772_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|LS483520.1_1787951_1789115_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|LS483520.1_1789271_1789883_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|LS483520.1_1790613_1790886_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_4|LS483520.1_1790902_1792264_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|LS483520.1_1792299_1792752_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|LS483520.1_1792748_1794725_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|LS483520.1_1794814_1796713_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|LS483520.1_1796836_1797154_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|LS483520.1_1797929_1799051_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
