The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	36592	49027	1829590		Synechococcus_phage(28.57%)	8	NA	NA
SRX86668.1|36592_40366_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	9.4e-41
SRX86669.1|40599_42054_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	3.4e-55
SRX86670.1|42081_43104_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	42.0	3.6e-64
SRX86671.1|43271_43826_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SRX86672.1|44009_45557_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	4.4e-45
SRX86673.1|45614_46739_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SRX86674.1|46901_48257_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SRX86675.1|48535_49027_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.9e-18
>prophage 2
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	176970	184461	1829590	transposase,integrase	Shigella_phage(33.33%)	10	171050:171063	184578:184591
171050:171063	attL	TTTTTTTATCTCAA	NA	NA	NA	NA
SRX86797.1|176970_179613_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	35.9	1.5e-64
SRX86798.1|179799_180255_+	coA binding domain-containing protein	NA	NA	NA	NA	NA
SRX86799.1|180306_180774_+	ferric uptake regulator family protein	NA	NA	NA	NA	NA
SRX86800.1|181088_181229_+	trans-acting positive regulator	NA	NA	NA	NA	NA
SRX86801.1|181450_182785_+	phosphoadenosine phosphosulfate reductase family protein	NA	L0P6Z6	Lactobacillus_phage	39.5	6.8e-87
SRX86802.1|182777_183308_+	parB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	68.6	7.1e-64
SRX86803.1|183300_183510_+	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SRX86804.1|183636_183852_-	Transposase	NA	U5P429	Shigella_phage	43.9	7.7e-09
SRX86805.1|183891_184062_-|integrase	integrase	integrase	U5P429	Shigella_phage	44.4	5.7e-07
SRX86806.1|184164_184461_-|transposase	transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	33.3	9.3e-05
184578:184591	attR	TTTTTTTATCTCAA	NA	NA	NA	NA
>prophage 3
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	337882	343916	1829590		Streptococcus_phage(100.0%)	9	NA	NA
SRX86950.1|337882_338518_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SRX86951.1|338535_339411_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.4	1.9e-61
SRX86952.1|339429_339669_+	Tpl protein	NA	NA	NA	NA	NA
SRX86953.1|340073_340397_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SRX86954.1|340401_341265_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
SRX86955.1|341291_341684_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SRX86956.1|341730_342360_-	copper homeostasis protein	NA	NA	NA	NA	NA
SRX86957.1|342658_343015_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SRX86958.1|343088_343916_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	3.8e-128
>prophage 4
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	480347	519522	1829590	head,terminase,tail	Streptococcus_phage(63.27%)	62	NA	NA
SRX87097.1|480347_481196_-	glycosyl hydrolases 25 family protein	NA	A0A223LJI5	Bacillus_phage	31.3	1.9e-18
SRX87098.1|481520_482024_+	membrane protein	NA	NA	NA	NA	NA
SRX87099.1|482007_482391_+	Surface-layer 125 kDa protein	NA	NA	NA	NA	NA
SRX87100.1|482436_482733_-	glutathione peroxidase	NA	NA	NA	NA	NA
SRX87101.1|482741_484199_-	site-specific recombinase/resolvase	NA	Q38184	Lactococcus_phage	50.7	1.5e-132
SRX87102.1|484334_484853_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.3	7.8e-31
SRX87103.1|484864_485620_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	61.2	3.3e-78
SRX87104.1|485821_486034_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SRX87105.1|486074_486206_+	Uncharacterised protein	NA	NA	NA	NA	NA
SRX87106.1|486202_486385_-	phage membrane protein	NA	NA	NA	NA	NA
SRX87107.1|486617_486803_+	phage protein	NA	Q938N3	Temperate_phage	91.8	1.1e-22
SRX87108.1|487336_487726_+	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	8.7e-51
SRX87109.1|487706_487940_+	phage protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
SRX87110.1|487936_488077_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SRX87111.1|488085_488292_+	phage protein	NA	NA	NA	NA	NA
SRX87112.1|488347_488677_+	phage protein	NA	J7KGX3	Streptococcus_phage	87.2	1.7e-47
SRX87113.1|488679_489606_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SRX87114.1|489602_489803_+	phage protein	NA	NA	NA	NA	NA
SRX87115.1|489795_490593_+	phage protein	NA	J7KGZ1	Streptococcus_phage	82.3	3.4e-126
SRX87116.1|490769_491111_+	phage protein	NA	M1NS23	Streptococcus_phage	38.7	3.1e-12
SRX87117.1|491107_491620_+	phage protein	NA	Q708P9	Streptococcus_phage	74.4	3.4e-63
SRX87118.1|491606_491804_+	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
SRX87119.1|491797_492082_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SRX87120.1|492078_492348_+	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	91.0	1.2e-43
SRX87121.1|492357_492642_+	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
SRX87122.1|492645_493128_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SRX87123.1|493117_493882_+	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	3.6e-133
SRX87124.1|493929_494661_+	phage protein	NA	A0A2H4JBN7	uncultured_Caudovirales_phage	38.1	1.4e-25
SRX87125.1|494657_494828_+	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SRX87126.1|495095_495515_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	80.6	3.0e-57
SRX87127.1|496116_496473_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SRX87128.1|496469_497738_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SRX87129.1|497730_499224_+	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SRX87130.1|499229_499454_+	phage protein	NA	NA	NA	NA	NA
SRX87131.1|499503_499683_+	phage protein	NA	NA	NA	NA	NA
SRX87132.1|499675_499942_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	86.4	7.3e-33
SRX87133.1|500051_501467_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
SRX87134.1|501547_502009_+	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SRX87135.1|502033_502945_+|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.3	9.9e-114
SRX87136.1|502944_503145_+	phage protein	NA	NA	NA	NA	NA
SRX87137.1|503154_503577_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
SRX87138.1|503536_503875_+	phage protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
SRX87139.1|503867_504104_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	67.9	6.7e-22
SRX87140.1|504104_504440_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SRX87141.1|504451_505030_+|tail	Major tail protein	tail	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
SRX87142.1|505040_505304_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SRX87143.1|505318_505690_+	phage protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
SRX87144.1|505689_508047_+	phage protein	NA	M1NRG5	Streptococcus_phage	50.6	6.5e-141
SRX87145.1|508043_508739_+	phage protein	NA	A0A1B1P761	Bacillus_phage	29.6	7.6e-05
SRX87146.1|508735_510700_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	51.3	2.0e-103
SRX87147.1|510699_511725_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	83.3	3.7e-149
SRX87148.1|511734_513519_+	gp58-like family protein	NA	Q938J9	Temperate_phage	48.8	7.4e-97
SRX87149.1|513530_513959_+	phage protein	NA	A3F661	Streptococcus_phage	89.4	6.8e-65
SRX87150.1|513961_514594_+	phage protein	NA	Q938J7	Temperate_phage	48.1	2.9e-43
SRX87151.1|514604_514904_+	phage protein	NA	Q938J6	Temperate_phage	91.7	9.6e-42
SRX87152.1|514900_515086_+	phage protein	NA	Q938J5	Temperate_phage	96.7	1.1e-24
SRX87153.1|515089_515200_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	6.7e-09
SRX87154.1|515196_516402_+	N-acetylmuramoyl-L-alanine amidase	NA	Q938J4	Temperate_phage	84.0	2.5e-205
SRX87155.1|516518_516875_-	phage protein	NA	NA	NA	NA	NA
SRX87156.1|516938_517178_-	Phage protein	NA	NA	NA	NA	NA
SRX87157.1|517526_517730_-	glutathione peroxidase	NA	NA	NA	NA	NA
SRX87158.1|517722_519522_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	36.7	5.0e-109
>prophage 5
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	644048	654651	1829590		Streptococcus_phage(57.14%)	9	NA	NA
SRX87268.1|644048_646259_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
SRX87269.1|646366_647530_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SRX87270.1|647526_648213_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SRX87271.1|648306_649473_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.0	2.5e-32
SRX87272.1|649533_649875_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
SRX87273.1|650095_651448_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	4.5e-30
SRX87274.1|651535_652804_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SRX87275.1|652833_653274_-	membrane protein	NA	NA	NA	NA	NA
SRX87276.1|653508_654651_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
>prophage 6
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	661289	719231	1829590	transposase,tRNA,head,protease	Bacillus_phage(18.75%)	51	NA	NA
SRX87285.1|661289_662423_+|transposase	transposase	transposase	NA	NA	NA	NA
SRX87286.1|662427_662559_+	hupothetical protein	NA	NA	NA	NA	NA
SRX87287.1|662712_663234_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SRX87288.1|663249_664509_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	37.8	1.0e-63
SRX87289.1|664518_665505_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.2e-25
SRX87290.1|665548_666631_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
SRX87291.1|666876_670053_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SRX87292.1|670258_671530_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SRX87293.1|671529_672240_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.0	4.5e-37
SRX87294.1|672251_673472_+	permease family protein	NA	NA	NA	NA	NA
SRX87295.1|673725_675459_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
SRX87296.1|675585_675858_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SRX87297.1|675867_676107_+	RNA binding protein	NA	NA	NA	NA	NA
SRX87298.1|677038_680065_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SRX87299.1|680084_680486_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
SRX87300.1|680651_681527_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SRX87301.1|681662_682184_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SRX87302.1|682398_682917_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SRX87303.1|682906_683638_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SRX87304.1|683637_684630_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	1.4e-28
SRX87305.1|684806_685865_+	regulatory protein	NA	NA	NA	NA	NA
SRX87306.1|685877_686801_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SRX87307.1|687101_687770_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SRX87308.1|687766_688678_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SRX87309.1|688674_690621_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SRX87310.1|690719_691313_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SRX87311.1|691464_692172_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SRX87312.1|693128_694154_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SRX87313.1|694632_694809_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SRX87314.1|695037_695418_+|transposase	transposase	transposase	NA	NA	NA	NA
SRX87315.1|695417_696266_+	degV family protein	NA	NA	NA	NA	NA
SRX87316.1|696390_697599_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.5	4.8e-39
SRX87317.1|697595_699473_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	2.5e-63
SRX87318.1|700366_700777_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SRX87319.1|700858_702871_-	5'-nucleotidase	NA	NA	NA	NA	NA
SRX87320.1|703089_703740_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SRX87321.1|703742_704411_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SRX87322.1|704419_705652_+	two component system histidine kinase	NA	NA	NA	NA	NA
SRX87323.1|705944_706823_+	mevalonate kinase	NA	NA	NA	NA	NA
SRX87324.1|706804_707749_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SRX87325.1|707741_708749_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SRX87326.1|708741_709731_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SRX87327.1|709960_711238_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SRX87328.1|711224_712400_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SRX87329.1|712608_713448_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SRX87330.1|713527_714025_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SRX87331.1|714044_714215_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SRX87332.1|714344_715574_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SRX87333.1|715583_716183_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SRX87334.1|716330_717074_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SRX87335.1|717131_719231_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.1	2.8e-119
>prophage 7
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	1189951	1248517	1829590	capsid,terminase,protease,holin,head,tail	Temperate_phage(57.14%)	84	NA	NA
SRX87783.1|1189951_1190989_-|protease	ATP-dependent protease La	protease	NA	NA	NA	NA
SRX87784.1|1190975_1191467_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	33.8	1.5e-15
SRX87785.1|1191456_1191996_-	methyltransferase	NA	NA	NA	NA	NA
SRX87786.1|1192118_1193111_-	asparagine synthetase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	38.2	1.5e-51
SRX87787.1|1193423_1194374_-	carbamate kinase	NA	NA	NA	NA	NA
SRX87788.1|1194393_1195725_-	dipeptidase, family protein	NA	NA	NA	NA	NA
SRX87789.1|1195741_1197235_-	arginine/ornithine antiporter	NA	NA	NA	NA	NA
SRX87790.1|1197404_1198418_-	ornithine transcarbamylase	NA	NA	NA	NA	NA
SRX87791.1|1198457_1198886_-	acetyltransferase	NA	NA	NA	NA	NA
SRX87792.1|1198985_1200221_-	arginine deiminase	NA	NA	NA	NA	NA
SRX87793.1|1200494_1201175_-	Fumarate and nitrate reduction regulatory protein	NA	NA	NA	NA	NA
SRX87794.1|1201316_1201790_+	arginine repressor	NA	NA	NA	NA	NA
SRX87795.1|1201955_1202672_-	B3/4 domain-containing protein	NA	NA	NA	NA	NA
SRX87796.1|1202685_1203765_-	cytoplasmic protein	NA	NA	NA	NA	NA
SRX87797.1|1203837_1205571_-	two-component sensor kinase	NA	Q9EYF3	Enterobacteria_phage	33.2	1.1e-25
SRX87798.1|1205567_1206308_-	two-component response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	6.2e-05
SRX87799.1|1206552_1206735_-	phage protein	NA	A3F673	Streptococcus_phage	78.3	6.9e-19
SRX87800.1|1206945_1207185_+	Phage protein	NA	NA	NA	NA	NA
SRX87801.1|1207224_1207698_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	92.3	1.6e-78
SRX87802.1|1207699_1208056_+	phage protein	NA	NA	NA	NA	NA
SRX87803.1|1208188_1208563_+	protein gp30	NA	NA	NA	NA	NA
SRX87804.1|1208562_1209165_+	AP2 domain	NA	A0A1S5SAA5	Streptococcus_phage	30.5	2.1e-19
SRX87805.1|1209166_1209382_+	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	52.1	3.7e-11
SRX87806.1|1209450_1209690_+	Uncharacterised protein	NA	NA	NA	NA	NA
SRX87807.1|1209876_1211079_-	phage associated protein	NA	Q938J4	Temperate_phage	97.5	4.6e-236
SRX87808.1|1211194_1211422_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SRX87809.1|1211418_1211694_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SRX87810.1|1211703_1212321_-	phage protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
SRX87811.1|1212323_1212755_-	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SRX87812.1|1212766_1214650_-	phage protein	NA	Q938J9	Temperate_phage	98.1	8.3e-256
SRX87813.1|1214664_1215678_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	99.1	2.3e-183
SRX87814.1|1215674_1217819_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	95.2	0.0e+00
SRX87815.1|1217815_1218532_-	phage protein	NA	Q938K2	Temperate_phage	99.2	4.2e-136
SRX87816.1|1218528_1221789_-	phage protein	NA	Q938K3	Temperate_phage	97.4	0.0e+00
SRX87817.1|1221778_1222360_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	97.9	7.7e-104
SRX87818.1|1222363_1222798_-	phage protein	NA	Q938K5	Temperate_phage	97.9	4.2e-70
SRX87819.1|1222841_1223303_-|tail	tail shaft protein	tail	Q938K6	Temperate_phage	78.8	1.9e-60
SRX87820.1|1223302_1223701_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	98.5	6.5e-70
SRX87821.1|1223697_1224054_-	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SRX87822.1|1224053_1224413_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	99.1	2.0e-57
SRX87823.1|1224375_1224792_-	phage protein	NA	Q938K7	Temperate_phage	99.1	3.3e-56
SRX87824.1|1224845_1225664_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SRX87825.1|1225667_1226276_-	phage protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
SRX87826.1|1226407_1226674_-	secreted phage protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
SRX87827.1|1226735_1226975_-	phage protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
SRX87828.1|1226946_1228425_-|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.8	5.3e-274
SRX87829.1|1228429_1229932_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.8	5.4e-282
SRX87830.1|1229945_1231157_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SRX87831.1|1231239_1231713_-	phage protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
SRX87832.1|1231763_1232141_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SRX87833.1|1232593_1233271_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
SRX87834.1|1233249_1233768_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
SRX87835.1|1234680_1235118_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	98.6	6.7e-76
SRX87836.1|1235384_1236020_-	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
SRX87837.1|1236021_1236306_-	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.3	2.8e-38
SRX87838.1|1236302_1236716_-	phage protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
SRX87839.1|1236725_1236995_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SRX87840.1|1236991_1237276_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
SRX87841.1|1237269_1237467_-	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
SRX87842.1|1237453_1237966_-	phage protein	NA	Q708P9	Streptococcus_phage	73.8	3.4e-63
SRX87843.1|1237962_1238301_-	phage protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
SRX87844.1|1238477_1238645_-	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	55.6	6.0e-09
SRX87845.1|1238654_1239452_-	phage protein	NA	J7KGZ1	Streptococcus_phage	82.3	5.8e-126
SRX87846.1|1239444_1239645_-	phage protein	NA	NA	NA	NA	NA
SRX87847.1|1239641_1240568_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	70.7	7.0e-91
SRX87848.1|1240570_1240900_-	phage protein	NA	J7KGX3	Streptococcus_phage	87.2	1.1e-46
SRX87849.1|1240955_1241162_-	phage protein	NA	NA	NA	NA	NA
SRX87850.1|1241170_1241311_-	phage protein	NA	NA	NA	NA	NA
SRX87851.1|1241316_1241529_-	phage protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
SRX87852.1|1241509_1241896_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	1.1e-48
SRX87853.1|1242056_1242308_-	replication protein	NA	A0A141E1D1	Streptococcus_phage	39.0	7.4e-11
SRX87854.1|1242407_1242593_-	phage protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
SRX87855.1|1242621_1242879_-	phage protein	NA	NA	NA	NA	NA
SRX87856.1|1242984_1243200_+	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SRX87857.1|1243173_1243422_-	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SRX87858.1|1243500_1243701_+	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
SRX87859.1|1243697_1243847_-	phage protein	NA	Q938N4	Temperate_phage	98.0	1.5e-19
SRX87860.1|1243879_1244608_-	phage antirepressor protein	NA	Q938N5	Temperate_phage	99.6	3.4e-133
SRX87861.1|1244618_1244810_-	phage protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
SRX87862.1|1245115_1245265_+	Uncharacterised protein	NA	NA	NA	NA	NA
SRX87863.1|1245958_1246318_+	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
SRX87864.1|1246331_1246712_+	phage protein	NA	Q938N7	Temperate_phage	99.2	5.3e-69
SRX87865.1|1246722_1247244_+	phage protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
SRX87866.1|1247419_1248517_+	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	99.7	6.0e-206
>prophage 8
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	1403303	1443088	1829590	terminase,portal,integrase,tail	Streptococcus_pyogenes_phage(57.63%)	60	1408679:1408694	1443853:1443868
SRX88002.1|1403303_1404764_-	permease family protein	NA	A0A0R6PHV4	Moraxella_phage	28.6	7.1e-37
SRX88003.1|1405103_1405286_-	paratox	NA	J7KBZ4	Streptococcus_phage	83.1	2.8e-20
SRX88004.1|1405506_1406262_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SRX88005.1|1406383_1407043_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SRX88006.1|1407042_1407264_-	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SRX88007.1|1407273_1408047_-	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SRX88008.1|1408057_1408660_-	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SRX88009.1|1408671_1409436_-	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	98.4	8.0e-149
1408679:1408694	attL	AATTTACAATATGGAT	NA	NA	NA	NA
SRX88010.1|1409437_1409770_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	99.1	7.4e-51
SRX88011.1|1409769_1410093_-	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SRX88012.1|1410106_1410229_-	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	100.0	4.8e-16
SRX88013.1|1410242_1410590_-	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	99.1	6.5e-58
SRX88014.1|1410600_1412463_-	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.4	0.0e+00
SRX88015.1|1412467_1415908_-	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	98.7	0.0e+00
SRX88016.1|1415908_1417393_-|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.6	2.8e-291
SRX88017.1|1417393_1419199_-	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
SRX88018.1|1419191_1419650_-	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
SRX88019.1|1419622_1419940_-	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SRX88020.1|1419952_1420459_-	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SRX88021.1|1420470_1420881_-	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SRX88022.1|1420882_1421266_-	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SRX88023.1|1421274_1421586_-	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	98.1	1.0e-49
SRX88024.1|1421582_1421927_-	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SRX88025.1|1421940_1422234_-	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SRX88026.1|1422246_1423137_-	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SRX88027.1|1423155_1423725_-	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	98.4	8.5e-71
SRX88028.1|1423833_1423968_-	Uncharacterised protein	NA	NA	NA	NA	NA
SRX88029.1|1423969_1424239_-	phage protein	NA	Q938K9	Temperate_phage	85.2	5.6e-33
SRX88030.1|1424245_1425154_-	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	98.2	6.7e-86
SRX88031.1|1425122_1426448_-|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	97.0	1.0e-236
SRX88032.1|1426447_1427722_-|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SRX88033.1|1427711_1428092_-	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SRX88034.1|1428701_1429136_-	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	93.1	5.5e-70
SRX88035.1|1429420_1429591_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SRX88036.1|1429587_1430091_-	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	98.8	5.9e-92
SRX88037.1|1430377_1430563_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SRX88038.1|1430728_1431064_-	Uncharacterised protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
SRX88039.1|1431066_1431351_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SRX88040.1|1431347_1431518_-	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SRX88041.1|1431514_1431928_-	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SRX88042.1|1431924_1432209_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SRX88043.1|1432202_1432454_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SRX88044.1|1432450_1432807_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	94.9	1.8e-58
SRX88045.1|1432790_1433111_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SRX88046.1|1433355_1434276_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	100.0	1.1e-179
SRX88047.1|1434281_1434836_-	DNA primase	NA	J7KH16	Streptococcus_phage	93.3	3.1e-86
SRX88048.1|1434825_1435629_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SRX88049.1|1435640_1436099_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SRX88050.1|1436114_1437344_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	100.0	3.3e-237
SRX88051.1|1437445_1438126_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SRX88052.1|1438126_1438609_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SRX88053.1|1438756_1439071_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	2.7e-50
SRX88054.1|1439086_1439224_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
SRX88055.1|1439254_1439506_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
SRX88056.1|1439600_1439819_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	2.0e-33
SRX88057.1|1440007_1440367_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SRX88058.1|1440350_1440728_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SRX88059.1|1440738_1440891_+	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SRX88060.1|1441061_1441748_+	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SRX88061.1|1441921_1443088_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	41.9	1.6e-79
1443853:1443868	attR	AATTTACAATATGGAT	NA	NA	NA	NA
>prophage 9
LS483520	Streptococcus pyogenes strain NCTC8322 genome assembly, chromosome: 1	1829590	1781753	1792264	1829590		Streptococcus_phage(77.78%)	16	NA	NA
SRX88372.1|1781753_1782101_-	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	60.7	6.8e-31
SRX88373.1|1782281_1782455_-	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SRX88374.1|1782741_1784355_-	bacteriophage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
SRX88375.1|1784344_1784866_-	phage protein	NA	NA	NA	NA	NA
SRX88376.1|1784875_1785142_-	phage protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.4e-12
SRX88377.1|1785152_1785347_-	phage protein	NA	NA	NA	NA	NA
SRX88378.1|1785343_1785676_-	phage protein	NA	NA	NA	NA	NA
SRX88379.1|1785687_1785870_-	phage protein	NA	NA	NA	NA	NA
SRX88380.1|1786090_1786333_-	Prophage antirepressor	NA	NA	NA	NA	NA
SRX88381.1|1786389_1786956_-	phage antirepressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
SRX88382.1|1786971_1787160_-	phage protein	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
SRX88383.1|1787328_1787772_+	phage transcriptional regulator, Cro/CI family	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
SRX88384.1|1787951_1789115_+	tyrosine recombinase XerD	NA	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
SRX88385.1|1789271_1789883_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
SRX88386.1|1790613_1790886_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SRX88387.1|1790902_1792264_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
