assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475275.1_42685_F01	LS483364	Streptococcus sanguinis strain NCTC11086 genome assembly, chromosome: 1	1	1069368-1073564	1,1,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	Type III-C,Type II-C,Type II-A,Type III-D,Type III-B,Type III-A,Type II-B	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACA	36,36,36,36,37	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	58,63,63,58,58	63	TypeIII-C,TypeII-C,TypeII-A,TypeIII-D,TypeIII-B,TypeIII-A,TypeII-B	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	NA,NA	NA|147aa|up_9|LS483364.1_1059149_1059590_+	PRK07308, PRK07308, flavodoxin; Validated	NA|461aa|up_8|LS483364.1_1059714_1061097_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|88aa|up_7|LS483364.1_1061393_1061657_+	PRK07248, PRK07248, chorismate mutase	NA|125aa|up_6|LS483364.1_1061656_1062031_+	PRK14221, PRK14221, fluoride efflux transporter CrcB	NA|109aa|up_5|LS483364.1_1062027_1062354_+	PRK14229, PRK14229, fluoride efflux transporter CrcB	NA|116aa|up_4|LS483364.1_1062472_1062820_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	cas9|1392aa|up_3|LS483364.1_1063239_1067415_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|LS483364.1_1067414_1068281_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|115aa|up_1|LS483364.1_1068277_1068622_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|LS483364.1_1068611_1069277_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|458aa|down_0|LS483364.1_1073597_1074971_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|226aa|down_1|LS483364.1_1075147_1075825_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|down_2|LS483364.1_1075838_1077050_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|271aa|down_3|LS483364.1_1077078_1077891_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|263aa|down_4|LS483364.1_1078151_1078940_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	csm6|254aa|down_5|LS483364.1_1078936_1079698_+	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	NA|246aa|down_6|LS483364.1_1079709_1080447_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	cas1|334aa|down_7|LS483364.1_1080559_1081561_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|109aa|down_8|LS483364.1_1081563_1081890_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|245aa|down_9|LS483364.1_1084288_1085023_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCA_900475275.1_42685_F01	LS483364	Streptococcus sanguinis strain NCTC11086 genome assembly, chromosome: 1	2	1081994-1083202	4,2	PILER-CR,CRISPRCasFinder	no	cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	Type III-C,Type II-C,Type II-A,Type III-D,Type III-B,Type III-A,Type II-B	GTAAGACACCCCAGTCACCTCGAGAGGGGACGGAAACAAAT,GTAAGACACCCCAGTCACCTCGAGAGGGGACGGAAAC	41,37	0	0	NA	NA	II-B,III-A:II-B,III-A	2,16	16	TypeIII-C,TypeII-C,TypeII-A,TypeIII-D,TypeIII-B,TypeIII-A,TypeII-B	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	NA,NA|288aa|down_9|LS483364.1_1093984_1094848_+	csn2|222aa|up_9|LS483364.1_1068611_1069277_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|458aa|up_8|LS483364.1_1073597_1074971_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|226aa|up_7|LS483364.1_1075147_1075825_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|up_6|LS483364.1_1075838_1077050_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|271aa|up_5|LS483364.1_1077078_1077891_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|263aa|up_4|LS483364.1_1078151_1078940_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	csm6|254aa|up_3|LS483364.1_1078936_1079698_+	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	NA|246aa|up_2|LS483364.1_1079709_1080447_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	cas1|334aa|up_1|LS483364.1_1080559_1081561_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|109aa|up_0|LS483364.1_1081563_1081890_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|245aa|down_0|LS483364.1_1084288_1085023_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|735aa|down_1|LS483364.1_1085003_1087208_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|130aa|down_2|LS483364.1_1087211_1087601_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|LS483364.1_1087600_1088263_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|LS483364.1_1088264_1089164_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|360aa|down_5|LS483364.1_1089165_1090245_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|390aa|down_6|LS483364.1_1090241_1091411_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm6|427aa|down_7|LS483364.1_1091407_1092688_+	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|303aa|down_8|LS483364.1_1092767_1093676_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|288aa|down_9|LS483364.1_1093984_1094848_+	NA
GCA_900475275.1_42685_F01	LS483364	Streptococcus sanguinis strain NCTC11086 genome assembly, chromosome: 1	3	1083545-1084083	2	CRT	no	cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	Type III-A,Type III-D,Type III-C,Type III-B	CCCCAGTCACCTCGAGAGGGNACG	24	0	0	NA	NA	NA	7	7	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	NA,NA|288aa|down_9|LS483364.1_1093984_1094848_+	csn2|222aa|up_9|LS483364.1_1068611_1069277_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|458aa|up_8|LS483364.1_1073597_1074971_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|226aa|up_7|LS483364.1_1075147_1075825_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|up_6|LS483364.1_1075838_1077050_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|271aa|up_5|LS483364.1_1077078_1077891_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|263aa|up_4|LS483364.1_1078151_1078940_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	csm6|254aa|up_3|LS483364.1_1078936_1079698_+	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	NA|246aa|up_2|LS483364.1_1079709_1080447_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	cas1|334aa|up_1|LS483364.1_1080559_1081561_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|109aa|up_0|LS483364.1_1081563_1081890_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|245aa|down_0|LS483364.1_1084288_1085023_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|735aa|down_1|LS483364.1_1085003_1087208_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|130aa|down_2|LS483364.1_1087211_1087601_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|LS483364.1_1087600_1088263_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|LS483364.1_1088264_1089164_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|360aa|down_5|LS483364.1_1089165_1090245_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|390aa|down_6|LS483364.1_1090241_1091411_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm6|427aa|down_7|LS483364.1_1091407_1092688_+	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|303aa|down_8|LS483364.1_1092767_1093676_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|288aa|down_9|LS483364.1_1093984_1094848_+	NA
GCA_900475275.1_42685_F01	LS483364	Streptococcus sanguinis strain NCTC11086 genome assembly, chromosome: 1	5	1898408-1898497	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	Orphan	TTGAACTGACATTTTGTCAGTTTTA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,cas9,cas1,cas2,csn2,csm6,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DinG	NA|515aa|up_1|LS483364.1_1896140_1897685_-,NA	NA|144aa|up_9|LS483364.1_1888649_1889081_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|LS483364.1_1889073_1889463_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|up_7|LS483364.1_1889482_1890043_-	PRK00529, PRK00529, elongation factor P; Validated	NA|354aa|up_6|LS483364.1_1890104_1891166_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|944aa|up_5|LS483364.1_1891317_1894149_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|315aa|up_4|LS483364.1_1894276_1895221_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|225aa|up_3|LS483364.1_1895239_1895914_+	COG4858, COG4858, Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]	NA|70aa|up_2|LS483364.1_1895931_1896141_-	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|515aa|up_1|LS483364.1_1896140_1897685_-	NA	NA|238aa|up_0|LS483364.1_1897677_1898391_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|205aa|down_0|LS483364.1_1898531_1899146_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|80aa|down_1|LS483364.1_1899241_1899481_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|165aa|down_2|LS483364.1_1899517_1900012_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|97aa|down_3|LS483364.1_1900023_1900314_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|422aa|down_4|LS483364.1_1900492_1901758_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|677aa|down_5|LS483364.1_1901957_1903988_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|300aa|down_6|LS483364.1_1904102_1905002_+	COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism]	NA|209aa|down_7|LS483364.1_1905016_1905643_+	COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]	NA|558aa|down_8|LS483364.1_1905709_1907383_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|200aa|down_9|LS483364.1_1907395_1907995_+	COG3758, COG3758, Uncharacterized protein conserved in bacteria [Function unknown]
