The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	40125	49951	2255201		Synechococcus_phage(33.33%)	6	NA	NA
SQF65937.1|40125_43851_+	phosphoribosyl formylglycin amidine synthase	NA	A6N228	Microbacterium_phage	25.5	2.9e-34
SQF65938.1|43969_45421_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	4.2e-58
SQF65939.1|45573_46602_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	43.4	5.6e-65
SQF65940.1|46594_47149_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.1	2.9e-23
SQF65941.1|47199_48744_+	IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	48.1	3.7e-76
SQF65942.1|48823_49951_-	autolysin	NA	F8HGP2	Streptococcus_phage	28.1	3.4e-07
>prophage 2
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	186519	274703	2255201	bacteriocin,integrase,protease,transposase,tRNA	Staphylococcus_phage(13.64%)	90	177323:177339	283705:283720
177323:177339	attL	ATTTTTAGGAGGTATCC	NA	NA	NA	NA
SQF66071.1|186519_186744_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
177323:177339	attL	ATTTTTAGGAGGTATCC	NA	NA	NA	NA
SQF66072.1|186766_187087_+	role in replication	NA	NA	NA	NA	NA
SQF66073.1|187455_187746_-	Cobalt-zinc-cadmium resistance protein CzcD	NA	NA	NA	NA	NA
SQF66074.1|188035_188320_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF66075.1|188541_188778_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SQF66076.1|189130_189523_+	mitogenic factor, Streptodornase B	NA	NA	NA	NA	NA
SQF66077.1|189798_190719_+	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQF66078.1|190732_193198_+	histidine triad protein	NA	NA	NA	NA	NA
SQF66079.1|193476_193920_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66080.1|194287_194959_-|integrase	integrase core domain protein	integrase	A0A0C5AEB1	Paenibacillus_phage	43.6	2.7e-36
SQF66081.1|195561_196023_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain protein	tRNA	NA	NA	NA	NA
SQF66082.1|196161_196413_-	HTH-type transcriptional regulator yozG	NA	NA	NA	NA	NA
SQF66083.1|196390_196909_-	membrane protein	NA	NA	NA	NA	NA
SQF66084.1|197015_198470_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF66085.1|198585_199299_-	ATPase components of ABC transporters	NA	A0A2I4R674	Erysipelothrix_phage	35.0	2.5e-19
SQF66086.1|199267_199915_-	ATPase components of ABC transporters	NA	A0A2I4R674	Erysipelothrix_phage	29.4	5.4e-13
SQF66087.1|200188_200809_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
SQF66088.1|200885_201482_+	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA	NA
SQF66089.1|201491_202142_+	nucleotide-binding protein	NA	NA	NA	NA	NA
SQF66090.1|202270_202573_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQF66091.1|202620_202797_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66092.1|202897_203185_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66093.1|203257_203368_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
SQF66094.1|203487_203814_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
SQF66095.1|203983_204391_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	45.9	1.2e-26
SQF66096.1|204605_204884_-	acetyltransferase	NA	NA	NA	NA	NA
204393:204409	attR	GGATACCTCCTAAAAAT	NA	NA	NA	NA
SQF66097.1|205282_205909_-	Dipeptide transport ATP-binding protein dppF	NA	G3M9Y6	Bacillus_virus	24.0	6.8e-13
204393:204409	attR	GGATACCTCCTAAAAAT	NA	NA	NA	NA
SQF66098.1|205892_206696_-	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	4.6e-06
SQF66099.1|206707_207529_-	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQF66100.1|207525_208503_-	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQF66101.1|208615_210244_-	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQF66102.1|210663_211341_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF66103.1|211708_212998_-	Emm-like cell surface protein CspZ.1	NA	NA	NA	NA	NA
SQF66104.1|213344_213476_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66105.1|213673_213937_+|transposase	transposase insK for insertion sequence element IS150	transposase	A0A0C5AEB1	Paenibacillus_phage	45.0	1.5e-09
SQF66106.1|213960_215136_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	33.2	1.2e-31
SQF66107.1|215259_215616_+	lipoprotein	NA	NA	NA	NA	NA
SQF66108.1|216263_216578_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66109.1|216667_217642_+|integrase	phage integrase family site specific recombinase	integrase	Q9AZR0	Lactococcus_phage	31.9	2.1e-37
SQF66110.1|218087_219377_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF66111.1|219393_219483_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66112.1|219533_221111_+|bacteriocin	bacteriocin ABC-type exporter, ATP binding/permease	bacteriocin	A0A1V0SE00	Indivirus	31.6	1.4e-17
SQF66113.1|221130_221334_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF66114.1|221471_221825_+	lipoprotein	NA	NA	NA	NA	NA
SQF66115.1|221875_222820_-|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	27.9	2.3e-20
SQF66116.1|223290_223710_+	Uncharacterized protein conserved in bacteria	NA	A0A075LYF5	Staphylococcus_phage	28.7	2.7e-05
SQF66117.1|223639_224728_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	33.2	6.2e-30
SQF66118.1|224986_225451_+|integrase	phage integrase family site specific recombinase	integrase	NA	NA	NA	NA
SQF66119.1|225579_226107_+|integrase	phage integrase family site specific recombinase	integrase	A7J266	Streptococcus_phage	31.2	1.8e-14
SQF66120.1|226525_226618_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF66121.1|226622_227756_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF66122.1|227870_229160_-	recombination factor protein	NA	A0A127AWE7	Bacillus_phage	45.7	2.0e-96
SQF66123.1|229192_229759_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	1.0e-31
SQF66124.1|229791_231549_-	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	S4VT78	Pandoravirus	27.7	1.8e-34
SQF66125.1|231864_232059_-	phage encoded transcriptional regulator, ArpU family	NA	NA	NA	NA	NA
SQF66126.1|232246_232348_+	RhuM	NA	NA	NA	NA	NA
SQF66127.1|232403_232874_+	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQF66128.1|232875_233220_+	RNA-binding protein	NA	NA	NA	NA	NA
SQF66129.1|233239_233434_+	NUDIX hydrolase	NA	NA	NA	NA	NA
SQF66130.1|233442_233667_+	NUDIX hydrolase	NA	NA	NA	NA	NA
SQF66131.1|233864_236402_-	histidine triad protein	NA	NA	NA	NA	NA
SQF66132.1|236963_237917_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
SQF66133.1|237916_238675_+	16S ribosomal RNA methyltransferase	NA	NA	NA	NA	NA
SQF66134.1|238840_239848_+	HTH-type transcriptional regulator	NA	NA	NA	NA	NA
SQF66135.1|240117_242304_+	PTS system, glucose-specific II ABC component	NA	NA	NA	NA	NA
SQF66136.1|242382_243207_+	putative RgfB protein	NA	NA	NA	NA	NA
SQF66137.1|243215_243728_-	putative kinase	NA	NA	NA	NA	NA
SQF66138.1|243752_244790_-	glucanase; deblocking aminopeptidase	NA	NA	NA	NA	NA
SQF66139.1|244860_245412_-	Substrate-specific component STY3230 of queuosine-regulated ECF transporter	NA	NA	NA	NA	NA
SQF66140.1|245415_246396_-	inosine-uridine preferring nucleoside hydrolase	NA	NA	NA	NA	NA
SQF66141.1|246677_247145_-	flavoprotein	NA	NA	NA	NA	NA
SQF66142.1|247631_249161_+	trans-acting regulator SP_1800	NA	NA	NA	NA	NA
SQF66143.1|249347_250799_+	M protein	NA	NA	NA	NA	NA
SQF66144.1|251003_253376_-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein	NA	NA	NA	NA	NA
SQF66145.1|253627_255730_+	GTP diphosphokinase	NA	A0A2I2L310	Orpheovirus	35.3	5.3e-09
SQF66146.1|255726_255846_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF66147.1|255859_256303_+|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQF66148.1|256569_257820_-	streptokinase	NA	Q4ZCZ1	Staphylococcus_virus	25.3	1.8e-20
SQF66149.1|258312_259158_+	leucine rich protein	NA	NA	NA	NA	NA
SQF66150.1|259753_260887_+	Multiple sugar-binding transport ATP-binding protein msmK	NA	G9BWD6	Planktothrix_phage	31.8	2.1e-20
SQF66151.1|260968_262576_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQF66152.1|262973_264014_+	lipoprotein	NA	NA	NA	NA	NA
SQF66153.1|264474_268101_+	pullulanase	NA	NA	NA	NA	NA
SQF66154.1|268253_268544_-	SpeK	NA	Q938I9	Temperate_phage	47.1	5.0e-11
SQF66155.1|268699_269050_+	thioredoxin	NA	NA	NA	NA	NA
SQF66156.1|269156_269516_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF66157.1|269742_270492_+	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.4	7.3e-22
SQF66158.1|270504_271299_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQF66159.1|271396_272656_+|protease	pheromone-processing membrane metalloprotease	protease	NA	NA	NA	NA
SQF66160.1|272846_274703_+|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
283705:283720	attR	TCTCTTTTTGGTAGCA	NA	NA	NA	NA
>prophage 3
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	293529	341890	2255201	tRNA,integrase,transposase,holin	Streptococcus_phage(30.0%)	49	285897:285913	310775:310791
285897:285913	attL	ACCATTCATTTTGGGAG	NA	NA	NA	NA
SQF66176.1|293529_294873_+|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.5	3.8e-53
SQF66177.1|294865_295267_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
SQF66178.1|295383_296088_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66179.1|296105_296414_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66180.1|296824_297610_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF66181.1|297657_298404_+	rRNA methyltransferase	NA	NA	NA	NA	NA
SQF66182.1|298407_298926_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF66183.1|299025_299886_+	DegV family protein	NA	NA	NA	NA	NA
SQF66184.1|300019_300718_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF66185.1|300714_300921_+	Cro/CI family transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	56.1	2.3e-10
SQF66186.1|301138_301585_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SQF66187.1|301605_301998_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
SQF66188.1|302134_303289_-|integrase	phage integrase family site specific recombinase	integrase	Q938N9	Temperate_phage	33.2	2.1e-44
SQF66189.1|303342_303861_-	DNA-binding protein	NA	W6LMS6	Streptococcus_phage	38.7	9.6e-05
SQF66190.1|304013_304298_+	DNA-binding protein	NA	NA	NA	NA	NA
SQF66191.1|304395_305130_+	DnaD and phage-associated domain protein	NA	R9QM95	Lactococcus_phage	65.7	5.3e-17
SQF66192.1|305144_305435_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66193.1|305427_305790_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66194.1|305789_306146_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66195.1|306658_307480_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	42.0	9.1e-50
SQF66196.1|307512_307806_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF66197.1|308715_309330_+	cadmium resistance protein	NA	NA	NA	NA	NA
SQF66198.1|309341_309680_+	cadmium efflux system accessory protein	NA	E4ZFI8	Streptococcus_phage	34.3	4.5e-11
SQF66199.1|310515_312465_+	PRD domain/PTS system IIA domain protein	NA	NA	NA	NA	NA
310775:310791	attR	ACCATTCATTTTGGGAG	NA	NA	NA	NA
SQF66200.1|312466_312925_+	PTS system galactitol-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF66201.1|312934_313285_+	Galactitol permease IIC component	NA	NA	NA	NA	NA
SQF66202.1|313277_314255_+	Galactitol permease IIC component	NA	NA	NA	NA	NA
SQF66203.1|314259_314544_+	PTS system galactitol-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQF66204.1|314545_315385_+	fructose-bisphosphate aldolase, class II	NA	NA	NA	NA	NA
SQF66205.1|315384_316062_+	triosephosphate isomerase	NA	NA	NA	NA	NA
SQF66206.1|316073_316595_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF66207.1|316841_317657_+	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQF66208.1|323228_323711_+	competence protein	NA	NA	NA	NA	NA
SQF66209.1|323941_325291_-	aspartate kinase	NA	NA	NA	NA	NA
SQF66210.1|325436_326186_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SQF66211.1|326175_326943_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQF66212.1|326929_327403_+	membrane protein	NA	NA	NA	NA	NA
SQF66213.1|327413_327977_+	TIGR01440 family protein	NA	NA	NA	NA	NA
SQF66214.1|328039_328885_-	potassium efflux system/small-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQF66215.1|329271_330675_+	alpha-amylase	NA	NA	NA	NA	NA
SQF66216.1|330930_332304_+	alpha-amylase	NA	NA	NA	NA	NA
SQF66217.1|332511_333795_+	trigger factor	NA	NA	NA	NA	NA
SQF66218.1|334008_334575_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
SQF66219.1|334857_336462_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	46.4	2.1e-138
SQF66220.1|336540_338298_+	two-component system, LytT family, sensor histidine kinase LytS	NA	Q9EYF3	Enterobacteria_phage	31.2	1.6e-64
SQF66221.1|338294_339023_+	two-component response regulator	NA	NA	NA	NA	NA
SQF66222.1|339200_340655_+	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	91.7	2.4e-255
SQF66223.1|340715_341165_+	murein hydrolase regulator	NA	NA	NA	NA	NA
SQF66224.1|341182_341890_+|holin	antiholin-like protein	holin	NA	NA	NA	NA
>prophage 4
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	412838	466623	2255201	integrase,portal,terminase,capsid,tail	Streptococcus_phage(55.38%)	80	415272:415294	463487:463509
SQF66291.1|412838_413720_+	primosomal protein	NA	S5MU12	Brevibacillus_phage	33.3	2.5e-29
SQF66292.1|413782_415093_+	GTP-binding protein EngA	NA	NA	NA	NA	NA
415272:415294	attL	GATTTTTGTTATAATGAAAAGAT	NA	NA	NA	NA
SQF66293.1|415430_416597_-|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	43.3	4.3e-77
SQF66294.1|416773_417667_-	phage protein	NA	A0A1I9LJQ0	Stx_converting_phage	47.5	2.8e-68
SQF66295.1|417702_418461_-	Phage transcriptional repressor	NA	J7KJ52	Streptococcus_phage	67.7	1.5e-91
SQF66296.1|418624_418726_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66297.1|418819_419113_+	phage protein	NA	A0A1X9I661	Streptococcus_phage	76.7	1.3e-35
SQF66298.1|419096_419267_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66299.1|419324_419483_+	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	96.2	2.0e-22
SQF66300.1|419581_420223_-	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
SQF66301.1|420272_420482_+	phage protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	98.6	3.7e-32
SQF66302.1|420470_420857_-	phage protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	98.4	8.0e-65
SQF66303.1|420930_421137_+	XRE family transcriptional regulator	NA	A0A1S5SFQ0	Streptococcus_phage	57.4	1.2e-14
SQF66304.1|421161_421923_+	Antirepressor	NA	L0P8P6	Lactobacillus_phage	52.9	9.6e-70
SQF66305.1|421935_422073_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66306.1|422051_422273_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66307.1|422697_422952_+	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	94.0	3.8e-39
SQF66308.1|422982_423111_+	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	95.2	9.5e-15
SQF66309.1|423107_423500_+	phage protein	NA	W6LMS6	Streptococcus_phage	49.3	6.8e-11
SQF66310.1|423487_423670_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66311.1|423779_424091_+	phage protein	NA	A0A1S5PRW6	Streptococcus_phage	49.5	2.3e-22
SQF66312.1|424077_424770_+	phage protein	NA	J7KC09	Streptococcus_phage	96.1	4.6e-127
SQF66313.1|424871_426101_+	phage DNA/RNA helicase	NA	J7KK96	Streptococcus_phage	95.1	5.6e-229
SQF66314.1|426116_426575_+	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
SQF66315.1|426577_427390_+	phage protein	NA	J7KH42	Streptococcus_phage	97.4	1.9e-153
SQF66316.1|427379_428855_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
SQF66317.1|429116_429530_+	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
SQF66318.1|429526_429847_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
SQF66319.1|429830_430187_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	86.4	8.5e-53
SQF66320.1|430183_430432_+	phage protein	NA	Q938M4	Temperate_phage	81.5	6.3e-31
SQF66321.1|430428_430710_+	phage protein	NA	J7KBY0	Streptococcus_phage	75.0	1.3e-32
SQF66322.1|430699_430891_+	phage protein	NA	A3F626	Streptococcus_phage	97.4	2.7e-13
SQF66323.1|430887_431154_+	phage protein	NA	Q938M2	Temperate_phage	96.5	3.1e-44
SQF66324.1|431163_431385_+	phage protein	NA	Q938M1	Temperate_phage	96.6	2.7e-25
SQF66325.1|431381_431588_+	phage protein	NA	NA	NA	NA	NA
SQF66326.1|431598_431868_+	phage membrane protein	NA	A7J287	Streptococcus_phage	84.3	6.2e-32
SQF66327.1|431959_432316_+	type II DNA modification methyltransferase	NA	A0A218MND0	uncultured_virus	56.9	1.2e-27
SQF66328.1|432305_432470_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66329.1|432482_433037_+	phage protein	NA	Q9MCL5	Streptococcus_virus	48.2	9.2e-30
SQF66330.1|433033_433198_+	phage protein	NA	NA	NA	NA	NA
SQF66331.1|433670_434096_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	79.6	4.7e-58
SQF66332.1|434836_434965_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66333.1|435026_435377_+	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	53.9	1.1e-20
SQF66334.1|435366_436656_+|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	93.2	5.3e-230
SQF66335.1|436667_438170_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	53.8	3.9e-139
SQF66336.1|438150_439722_+	phage Mu protein F like protein	NA	E8ZDA1	Streptococcus_phage	36.6	3.4e-61
SQF66337.1|439723_439930_+	phage protein	NA	A0A141E1X9	Streptococcus_phage	36.9	2.1e-08
SQF66338.1|439926_440346_+	GTP pyrophosphokinase	NA	A0A060QNR4	Streptococcus_phage	62.5	7.4e-40
SQF66339.1|440399_440669_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.6e-32
SQF66340.1|440722_441448_-	Uncharacterised protein	NA	A0A1S5S8M7	Streptococcus_phage	45.1	2.3e-52
SQF66341.1|441587_441764_+	Uncharacterised protein	NA	A0A1X9I5M8	Streptococcus_phage	79.3	3.0e-19
SQF66342.1|441886_442159_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66343.1|442221_442965_+	antirepressor	NA	M1PKL6	Streptococcus_phage	58.1	6.7e-76
SQF66344.1|443146_443767_+	phage protein	NA	O34060	Streptococcus_phage	49.2	7.2e-23
SQF66345.1|443776_444157_+	phage protein	NA	NA	NA	NA	NA
SQF66346.1|444159_445209_+|capsid	phage capsid protein	capsid	O34062	Streptococcus_phage	58.7	1.1e-108
SQF66347.1|445220_445490_+	phage protein	NA	NA	NA	NA	NA
SQF66348.1|445499_445853_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	52.1	3.0e-26
SQF66349.1|445849_446158_+	phage protein	NA	NA	NA	NA	NA
SQF66350.1|446147_446504_+	phage protein	NA	A0A097BY98	Enterococcus_phage	47.1	2.6e-17
SQF66351.1|446500_446890_+	phage protein	NA	B5SP36	Lactococcus_phage	68.2	4.6e-44
SQF66352.1|446901_447462_+|tail	Major tail protein	tail	D7RWD5	Brochothrix_phage	42.7	1.3e-26
SQF66353.1|447519_447879_+	phage protein	NA	Q77RZ7	Lactococcus_phage	46.8	2.5e-20
SQF66354.1|447920_448250_+	phage protein	NA	A0A1B0Y2Q4	Lactobacillus_phage	38.4	3.7e-10
SQF66355.1|448265_452285_+	tape measure domain protein	NA	A0A286QN99	Streptococcus_phage	49.6	1.2e-94
SQF66356.1|452314_453094_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	56.6	6.4e-69
SQF66357.1|453090_455148_+	phage protein	NA	A3F656	Streptococcus_phage	88.5	0.0e+00
SQF66358.1|455144_456458_+	phage protein	NA	A3F657	Streptococcus_phage	51.6	1.6e-48
SQF66359.1|456460_457057_+	phage protein	NA	A3F658	Streptococcus_phage	51.4	5.2e-55
SQF66360.1|457067_458954_+	phage infection protein	NA	A7J2A9	Streptococcus_phage	69.6	4.5e-100
SQF66361.1|458967_459138_+	phage protein	NA	NA	NA	NA	NA
SQF66362.1|459140_459752_+	phage protein	NA	Q938J7	Temperate_phage	83.7	6.7e-74
SQF66363.1|459762_460062_+	phage protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
SQF66364.1|460058_460244_+	phage protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
SQF66365.1|460247_460358_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	5.1e-09
SQF66366.1|460354_461572_+	phage lysin	NA	A0A1P8VVM5	Streptococcus_phage	59.0	3.4e-162
SQF66367.1|461726_462251_+	phage protein	NA	Q938J3	Temperate_phage	98.9	7.5e-98
SQF66368.1|462238_463105_+	phage protein	NA	Q938J2	Temperate_phage	95.5	1.7e-126
SQF66369.1|463238_463421_+	paratox	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
SQF66370.1|463530_466623_+	SWF/SNF family helicase	NA	M1H5J5	Paramecium_bursaria_Chlorella_virus	27.2	5.0e-40
463487:463509	attR	GATTTTTGTTATAATGAAAAGAT	NA	NA	NA	NA
>prophage 5
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	504306	515731	2255201		Streptococcus_phage(83.33%)	17	NA	NA
SQF66414.1|504306_505071_+	branched-chain amino acid ABC transporter ATP binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.2e-17
SQF66415.1|505070_505781_+	branched-chain amino acid ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	28.4	3.0e-17
SQF66416.1|505825_506488_+	5'-AMP-activated protein kinase subunit gamma-3	NA	M1NSC5	Streptococcus_phage	57.4	7.1e-61
SQF66417.1|506574_507210_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	66.3	2.3e-69
SQF66418.1|507225_508098_+	DNA polymerase III subunit delta	NA	M1NSC1	Streptococcus_phage	42.1	4.1e-56
SQF66419.1|508094_508895_+	stage 0 sporulation protein	NA	NA	NA	NA	NA
SQF66420.1|508887_509211_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	64.2	7.0e-30
SQF66421.1|509215_510079_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	76.7	1.8e-117
SQF66422.1|510105_510498_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF66423.1|510544_511174_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF66424.1|511290_512382_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	63.4	4.1e-130
SQF66425.1|512407_512959_+	acetyl transferase GNAT family	NA	M1PSC3	Streptococcus_phage	53.6	1.0e-49
SQF66426.1|513027_513525_+	methylated-DNA-protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	52.3	6.7e-40
SQF66427.1|513521_513878_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	62.4	9.1e-39
SQF66428.1|513928_514351_-	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF66429.1|514352_514742_-	glyoxalase family protein	NA	NA	NA	NA	NA
SQF66430.1|514903_515731_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	78.8	4.2e-127
>prophage 6
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	519994	626113	2255201	bacteriocin,integrase,protease,transposase,tRNA	Staphylococcus_phage(16.13%)	107	570353:570412	625225:626536
SQF66434.1|519994_520939_+|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	27.9	5.1e-20
SQF66435.1|521106_522078_+|protease	interleukin-8 protease	protease	NA	NA	NA	NA
SQF66436.1|522043_526048_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQF66437.1|526259_527927_+	cell shape-determining protein	NA	NA	NA	NA	NA
SQF66438.1|528209_528917_+	permease	NA	NA	NA	NA	NA
SQF66439.1|529184_531182_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.7	6.0e-87
SQF66440.1|531710_532724_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	2.9e-98
SQF66441.1|532727_533201_+	ribonucleotide reductase stimulatory protein	NA	F8WQ19	Bacillus_phage	37.8	3.7e-11
SQF66442.1|533184_535371_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	9.9e-168
SQF66443.1|535669_537004_+	branched-chain amino acid carrier protein	NA	NA	NA	NA	NA
SQF66444.1|537402_537756_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66445.1|538120_538357_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
SQF66446.1|538349_539048_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SQF66447.1|539044_539287_+	group-specific protein	NA	NA	NA	NA	NA
SQF66448.1|539303_539753_+	cytoplasmic protein	NA	NA	NA	NA	NA
SQF66449.1|539754_540717_+	trans-1,2-dihydrobenzene-1,2-diol dehydrogenase	NA	NA	NA	NA	NA
SQF66450.1|540877_542260_+	N-acetylglucosamine-1-phosphate uridyltransferase	NA	A0A2K9L4K9	Tupanvirus	35.6	1.6e-30
SQF66451.1|542290_542845_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF66452.1|542845_543097_+	membrane protein	NA	NA	NA	NA	NA
SQF66453.1|543114_543810_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
SQF66454.1|543882_544530_-	iron-dependent repressor	NA	NA	NA	NA	NA
SQF66455.1|544675_545608_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF66456.1|545672_546398_+	manganese transport system ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.2	6.2e-18
SQF66457.1|546398_547247_+	metal cation ABC transporter membrane protein	NA	NA	NA	NA	NA
SQF66458.1|547377_548184_-	peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	37.8	2.1e-22
SQF66459.1|548523_549783_+	Transposase DDE domain	NA	NA	NA	NA	NA
SQF66460.1|549974_552410_+	cell division protein	NA	S5VNE3	Mycobacterium_phage	51.1	2.5e-87
SQF66461.1|552478_552832_-	integral membrane protein	NA	NA	NA	NA	NA
SQF66462.1|553122_554382_+	Transposase DDE domain	NA	NA	NA	NA	NA
SQF66463.1|554674_555100_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF66464.1|555205_555895_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF66465.1|556171_556567_-	exported protein	NA	NA	NA	NA	NA
SQF66466.1|556848_557577_+	uridylate kinase	NA	NA	NA	NA	NA
SQF66467.1|557606_558164_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF66468.1|558283_559141_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF66469.1|559251_559722_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF66470.1|559718_559934_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF66471.1|560072_561239_+	surface antigen	NA	A0A2P1N5D1	Gordonia_phage	39.3	1.0e-14
SQF66472.1|561300_562254_-|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	33.3	2.3e-20
SQF66473.1|562609_564382_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF66474.1|564542_565604_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	48.6	2.5e-47
SQF66475.1|565650_566226_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF66476.1|566384_566882_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF66477.1|566862_567270_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF66478.1|567390_568287_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF66479.1|568473_568950_+	MutT/nudix family protein	NA	NA	NA	NA	NA
SQF66480.1|569204_569627_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66481.1|569623_569773_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF66482.1|570078_570324_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
570353:570412	attL	GGTAATGTAAAATATCTTGTGTAAACACAAAAAGGAATAAATCCTGTATAGTAGAGTTGC	NA	NA	NA	NA
SQF66483.1|570441_571617_+|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	33.2	9.4e-32
SQF66484.1|572353_572752_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF66485.1|573068_573296_+	BlpM	NA	NA	NA	NA	NA
SQF66486.1|573308_573509_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF66487.1|573509_573719_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66488.1|573803_573998_+|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
SQF66489.1|574047_574329_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66490.1|574522_574933_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66491.1|575718_576672_-|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	33.3	2.3e-20
SQF66492.1|576994_577864_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66493.1|577984_578263_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66494.1|578300_579902_-	SLH, S-layer homology domain W	NA	NA	NA	NA	NA
SQF66495.1|579998_580115_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66496.1|580126_580981_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF66497.1|581162_581990_+	formamido pyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	32.7	1.4e-26
SQF66498.1|581959_582580_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF66499.1|583032_583734_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.1	1.1e-24
SQF66500.1|583723_585361_+	ABC transporter, ATP binding protein	NA	NA	NA	NA	NA
SQF66501.1|585471_586974_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	43.5	3.2e-77
SQF66502.1|587233_588355_+	multidrug resistance protein B	NA	NA	NA	NA	NA
SQF66503.1|588543_588780_+	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF66504.1|588876_591207_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	4.4e-89
SQF66505.1|591209_591677_+	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.6	9.8e-41
SQF66506.1|591855_592149_+	cell division protein FtsW	NA	NA	NA	NA	NA
SQF66507.1|592275_593202_-	putative sugar transferase	NA	V5USA4	Oenococcus_phage	47.9	3.6e-79
SQF66508.1|593338_594523_-	deoxyribonuclease precursor	NA	A7J2B8	Streptococcus_phage	51.0	9.4e-72
SQF66509.1|594868_595246_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQF66510.1|595256_595922_-	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA	NA
SQF66511.1|595965_597051_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF66512.1|597224_598226_+	Catabolite control protein A	NA	NA	NA	NA	NA
SQF66513.1|598380_599844_+	alpha-amylase	NA	NA	NA	NA	NA
SQF66514.1|599920_600919_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF66515.1|600920_602255_+	1,2-diacylglycerol 3-glucosyltransferase	NA	NA	NA	NA	NA
SQF66516.1|602678_604622_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.1	5.6e-122
SQF66517.1|604807_605800_+	antibiotic transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.9	6.7e-15
SQF66518.1|605801_606620_+	Daunorubicin resistance transmembrane protein	NA	NA	NA	NA	NA
SQF66519.1|606621_607407_+	ABC transporter permease	NA	NA	NA	NA	NA
SQF66520.1|607511_608501_-	dihydroxyacetone kinase family protein	NA	NA	NA	NA	NA
SQF66521.1|608515_609052_-	HTH-type dhaKLM operon transcriptional activator dhaS	NA	NA	NA	NA	NA
SQF66522.1|609203_610193_+	dihydroxyacetone kinase subunit	NA	NA	NA	NA	NA
SQF66523.1|610203_610779_+	dihydroxyacetone kinase	NA	NA	NA	NA	NA
SQF66524.1|610778_611153_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
SQF66525.1|611170_611881_+	glycerol uptake facilitator protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	34.1	6.7e-33
SQF66526.1|612015_612585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66527.1|612553_613669_+	Acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
SQF66528.1|613658_614903_+	long-chain-fatty-acid-CoA ligase	NA	NA	NA	NA	NA
SQF66529.1|614997_615993_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF66530.1|616068_616890_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	42.0	9.1e-50
SQF66531.1|616922_617216_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF66532.1|617258_617891_-	ABC transporter permease	NA	NA	NA	NA	NA
SQF66533.1|617905_618607_-	L-cystine transport system permease protein tcyB	NA	NA	NA	NA	NA
SQF66534.1|618620_619421_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF66535.1|619420_620215_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	7.2e-36
SQF66536.1|620474_621185_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	39.4	5.7e-40
SQF66537.1|621177_622530_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	35.0	2.1e-35
SQF66538.1|622533_623343_+	metallo-beta-lactamase superfamily protein	NA	A0A0C5AJ83	Bacteriophage	37.5	1.1e-36
SQF66539.1|624019_625195_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	33.2	9.4e-32
SQF66540.1|625420_626113_+	ribonuclease III	NA	A0A167RGU4	Powai_lake_megavirus	31.6	2.5e-24
625225:626536	attR	GCAACTCTACTATACAGGATTTATTCCTTTTTGTGTTTACACAAGATATTTTACATTACCTATTATTGAGTCGAATGATGCTTCAAATCTCTTGTCAAAAGGTTTAAATTTATTAGAAAAATCCATTTAGAACCAGTTTTCTAGGTGGATTTTTGGTATACTAATAAGGTCTATGACAAAATGAAAGGGGTTTTTTATGAAAAAGCTTGAAGAGTTACTGGCAGCGTCTTTTGACATTTGTTTTGAAGACCACACCTTATTAGAAACGGCCTTTACCCATACATCTTATGCCAATGAGCATCGCCTCCTAAACATTTCACATAATGAACGTTTGGAATTTTTAGGAGACGCTGTTCTGCAATTAATCATCTCAGAATATTTATTTGCCAAATACCCTAAAAAAACAGAAGGTGACATGTCCAAGCTACGTTCTATGATTGTTCGTGAGGAGAGTTTGGCTGGCTTTTCACGTTTTTGTTCCTTTGATACCTATATCAAACTTGGGAAAGGCGAGGAGAAATCTGGTGGCCGCAATCGTGACACTATTTTGGGAGACTTATTTGAAGCCTTTTTAGGCGCTCTTCTCCTAGATAAAGGGGTTGATGAAGTTCGTCGTTTCTTGCAGCAGGTCATGATTCCACAAGTTGAGAAAGGGAATTTTGAAAAGGTCAAAGACTATAAGACCTGCCTTCAAGAACTCTTGCAGTCAAAGGGAGACATTGCTATAGATTACCAAGTAATTAGTGAGAAAGGCCCTGCCCATGCTAAACAGTTTGAAGTGGCTGTCTTTGTCAATGAAGAGGTTCTTAGTAAGGGGTTGGGCAAGTCTAAAAAAATGGCAGAGCAAGATGCTGCTAAAAATGCCCTAGTCCAACTGAGTGAGGTCTAAATGTTTTTAAAAGAAATTGAAATGCAAGGCTTTAAGTCCTTTGCAGACAAGACTAAGATTGAGTTTGATAAGGGAGTGACCGCGGTGGTTGGTCCAAATGGATCAGGAAAAAGCAATATCACAGAAAGCCTACGTTGGGCCTTAGGTGAATCAAGCGCTAAAAGTCTCCGTGGTGGCAAAATGCCTGATGTTATCTTTGCAGGGACTGAAAATCGGAGCCCCTTAAACTATGCTCAGGTAGCGGTGGTTCTTGATAACTCTGACCACTTCATTAAAGAGGCCAAAGAAGTGATTCGGATTGAAAGGCATATCTACCGTAATGGGGATAGTGATTACTTGATTGATGGTCGTAAAGTACGACTTCGTGATATCCACGATTTGTTTATGGATACAGGGCTTGGTCGTGATTCTTTCTCTATTATT	NA	NA	NA	NA
>prophage 7
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	884049	953366	2255201	tRNA,transposase,protease	Bacillus_phage(23.81%)	60	NA	NA
SQF66778.1|884049_885183_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66779.1|885347_886262_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.8	1.3e-07
SQF66780.1|886258_886717_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SQF66781.1|886706_887600_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQF66782.1|887726_888341_-	membrane-associated alkaline phosphatase	NA	M1Q152	Streptococcus_phage	37.2	1.1e-23
SQF66783.1|888619_889141_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQF66784.1|889156_890416_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	9.3e-62
SQF66785.1|890476_891409_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	30.9	1.2e-26
SQF66786.1|891443_892535_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.4	3.4e-60
SQF66787.1|892816_895963_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
SQF66788.1|896184_897447_+	macrolide-specific efflux protein macA	NA	NA	NA	NA	NA
SQF66789.1|897446_898157_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.1	3.8e-36
SQF66790.1|898168_899389_+	ABC transporter permease	NA	NA	NA	NA	NA
SQF66791.1|899381_899999_+	membrane protein	NA	M1Q152	Streptococcus_phage	51.0	2.3e-45
SQF66792.1|900073_901816_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
SQF66793.1|901942_902215_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQF66794.1|902224_902464_+	RNA binding protein	NA	NA	NA	NA	NA
SQF66795.1|902731_902887_+	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQF66796.1|902934_904158_+	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQF66797.1|904526_905045_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SQF66798.1|905034_905766_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF66799.1|905765_906758_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	3.7e-29
SQF66800.1|906946_908005_+	regulatory protein	NA	NA	NA	NA	NA
SQF66801.1|908017_908941_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF66802.1|909175_909889_+	fructose repressor	NA	NA	NA	NA	NA
SQF66803.1|909885_910797_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF66804.1|910793_912740_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF66805.1|912834_913434_+	autolysin	NA	Q332B8	Clostridium_botulinum_C_phage	32.4	3.3e-09
SQF66806.1|913593_914301_+	N-acetylmuramidase	NA	S5M633	Brevibacillus_phage	41.1	4.2e-11
SQF66807.1|914351_914873_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66808.1|914944_915325_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66809.1|915324_916173_+	DegV family protein	NA	NA	NA	NA	NA
SQF66810.1|916292_917501_+|tRNA	tRNA CCA-pyrophosphorylase	tRNA	H7BUW3	unidentified_phage	45.0	9.0e-38
SQF66811.1|917497_919375_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.8	1.0e-64
SQF66812.1|919482_921228_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.3	6.9e-39
SQF66813.1|921227_923000_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	2.1e-51
SQF66814.1|923189_924539_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
SQF66815.1|924663_925074_+	peptide deformylase	NA	NA	NA	NA	NA
SQF66816.1|925261_927286_-	putative cell surface 5'-nucleotidase	NA	NA	NA	NA	NA
SQF66817.1|927748_929470_+	ATPase and permease component	NA	W8CYL7	Bacillus_phage	26.4	1.1e-36
SQF66818.1|929471_931214_+	Lipid A export ATP-binding/permease protein msbA	NA	W8CYL7	Bacillus_phage	27.8	3.2e-44
SQF66819.1|931418_932297_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF66820.1|932278_933223_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF66821.1|933215_934229_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF66822.1|934215_935208_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF66823.1|935248_935434_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF66824.1|935353_936880_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF66825.1|937160_938114_-|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	33.3	2.3e-20
SQF66826.1|938245_941590_+	hypothetical mucus binding protein	NA	NA	NA	NA	NA
SQF66827.1|941873_942269_+|protease	Zinc metalloprotease zmpB	protease	NA	NA	NA	NA
SQF66828.1|942405_943950_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF66829.1|944109_945387_-	3-hydroxy-3-methylglutaryl-CoA reductase	NA	NA	NA	NA	NA
SQF66830.1|945367_946549_-	HMG-CoA synthase	NA	NA	NA	NA	NA
SQF66831.1|946766_947606_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	1.2e-81
SQF66832.1|947686_948184_+	dihydrofolate reductase	NA	A0A1B4XX05	Tenacibaculum_phage	31.2	1.9e-13
SQF66833.1|948203_948374_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF66834.1|948489_949719_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	4.6e-138
SQF66835.1|949728_950328_+	ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
SQF66836.1|950466_951210_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF66837.1|951266_953366_-|protease	ATP-dependent protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	1.3e-119
>prophage 8
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	969522	1027226	2255201	integrase,transposase	Bacillus_phage(26.32%)	59	970671:970710	1024325:1024364
SQF66855.1|969522_969816_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66856.1|969848_970670_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	42.0	9.1e-50
SQF66857.1|970670_971978_-	Sensor kinase dpiB	NA	NA	NA	NA	NA
970671:970710	attL	TTAGCTTAACTTTATGTCTATTTTTTCTTGACAAGTCCAG	NA	NA	NA	NA
SQF66858.1|972138_973470_+	Citrate-sodium symporter	NA	A0A140XAH4	Dickeya_phage	56.6	1.7e-16
SQF66859.1|973501_974668_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
SQF66860.1|974835_976368_+	chloride channel protein	NA	NA	NA	NA	NA
SQF66861.1|976426_977350_-	HTH-type transcriptional activator rhaR	NA	NA	NA	NA	NA
SQF66862.1|977569_978184_+	lipase/acylhydrolase	NA	NA	NA	NA	NA
SQF66863.1|978360_979488_+	membrane protein	NA	NA	NA	NA	NA
SQF66864.1|979535_980216_+	DNA repair protein	NA	NA	NA	NA	NA
SQF66865.1|980166_980913_-	class I glutamine amidotransferase	NA	NA	NA	NA	NA
SQF66866.1|980922_981567_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
SQF66867.1|981742_981955_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQF66868.1|982022_982370_-	cysteine desulfurase	NA	NA	NA	NA	NA
SQF66869.1|982359_983487_-	cysteine desulfhydrase	NA	H7BUW1	unidentified_phage	39.2	2.2e-30
SQF66870.1|983483_984464_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	34.3	2.8e-37
SQF66871.1|984592_985174_-	adenylate cyclase family protein	NA	NA	NA	NA	NA
SQF66872.1|985267_985939_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF66873.1|985913_986750_+	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA	NA
SQF66874.1|986746_987643_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQF66875.1|987656_988652_+	phosphotransacetylase	NA	NA	NA	NA	NA
SQF66876.1|988775_989531_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SQF66877.1|989724_990414_-	Na+ driven multidrug efflux pump	NA	NA	NA	NA	NA
SQF66878.1|990833_991562_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	38.7	1.1e-30
SQF66879.1|991554_993081_+	putative ABC transporter	NA	NA	NA	NA	NA
SQF66880.1|993358_994342_+	guanosine 5'-monophosphate oxidoreductase	NA	Q4ZCY7	Staphylococcus_virus	74.8	5.6e-139
SQF66881.1|994647_995229_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF66882.1|995228_996503_+	xanthine permease family protein	NA	Q9KX94	Enterobacteria_phage	28.1	1.3e-31
SQF66883.1|996631_997567_-	iron-sulfur cluster assembly/repair protein	NA	NA	NA	NA	NA
SQF66884.1|997619_997805_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
SQF66885.1|998001_998604_+	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	55.4	6.7e-50
SQF66886.1|998626_999706_+	peptide chain release factor 1	NA	NA	NA	NA	NA
SQF66887.1|999705_1000545_+	peptide release factor-glutamine N5-methyltransferase	NA	NA	NA	NA	NA
SQF66888.1|1000528_1001119_+	ribosome maturation factor rimN	NA	NA	NA	NA	NA
SQF66889.1|1001129_1001567_+	histone acetyltransferase HPA2-like protein	NA	NA	NA	NA	NA
SQF66890.1|1001577_1002834_+	serine hydroxymethyltransferase	NA	A0A219YB23	Aeromonas_phage	54.5	1.4e-97
SQF66891.1|1002840_1003818_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SQF66892.1|1003818_1004421_+	Pneumococcal vaccine antigen A	NA	M4W8D4	Bacillus_phage	43.9	1.6e-19
SQF66893.1|1004430_1006155_+	multidrug resistance ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.7	1.1e-41
SQF66894.1|1006151_1007879_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	1.7e-50
SQF66895.1|1008117_1009485_+	NADH oxidase H2O-forming	NA	NA	NA	NA	NA
SQF66896.1|1009553_1010087_+	riboflavin biosynthesis protein RibD C-domain-containing protein	NA	NA	NA	NA	NA
SQF66897.1|1010142_1011126_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQF66898.1|1011328_1013833_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.3	2.5e-106
SQF66899.1|1013841_1014591_+	sortase A	NA	NA	NA	NA	NA
SQF66900.1|1014673_1015087_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SQF66901.1|1015237_1016173_+	laminin-binding surface protein Lmb	NA	NA	NA	NA	NA
SQF66902.1|1016169_1016628_+	histidine triad protein	NA	NA	NA	NA	NA
SQF66903.1|1016900_1017860_+	extracellular protein	NA	NA	NA	NA	NA
SQF66904.1|1018162_1019107_+	laminin binding protein	NA	NA	NA	NA	NA
SQF66905.1|1019115_1019895_-|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	49.2	5.0e-66
SQF66906.1|1019930_1020149_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	54.4	1.5e-12
SQF66907.1|1020613_1021837_+	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase / UDP-N-acetylmuramoylpentapeptide-lysine	NA	NA	NA	NA	NA
SQF66908.1|1021956_1022250_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF66909.1|1022463_1022682_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	54.4	1.5e-12
SQF66910.1|1022717_1023497_+|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	49.2	1.3e-66
SQF66911.1|1023526_1024324_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	42.6	3.7e-48
SQF66912.1|1024404_1025568_-	Na+/H+ antiporter	NA	NA	NA	NA	NA
1024325:1024364	attR	TTAGCTTAACTTTATGTCTATTTTTTCTTGACAAGTCCAG	NA	NA	NA	NA
SQF66913.1|1025726_1027226_-	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	91.3	2.8e-254
>prophage 9
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	1362418	1420966	2255201	tRNA,transposase	Streptococcus_phi-m46.1-like_phage(22.22%)	53	NA	NA
SQF67238.1|1362418_1363552_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF67239.1|1363556_1363703_+	exfoliative toxin	NA	NA	NA	NA	NA
SQF67240.1|1363719_1364961_+	aminopeptidase	NA	NA	NA	NA	NA
SQF67241.1|1365021_1365939_+	Zinc transport protein zntB	NA	NA	NA	NA	NA
SQF67242.1|1365989_1366721_-	ribosomal small subunit pseudouridine synthaseA	NA	NA	NA	NA	NA
SQF67243.1|1366836_1367202_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF67244.1|1367300_1368521_-	MFS superfamily transporter	NA	NA	NA	NA	NA
SQF67245.1|1368893_1370378_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF67246.1|1370454_1371225_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF67247.1|1371221_1371878_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.9	2.7e-20
SQF67248.1|1372081_1372474_-	thioesterase	NA	NA	NA	NA	NA
SQF67249.1|1372555_1373350_-	phosphorylase, Pnp/UDP family	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	83.5	1.0e-77
SQF67250.1|1373496_1374336_-	YaeC family protein	NA	NA	NA	NA	NA
SQF67251.1|1375086_1375584_-	Uncharacterised protein	NA	A0A1P8BMT7	Lactococcus_phage	51.9	7.5e-07
SQF67252.1|1375703_1377062_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	89.8	9.9e-235
SQF67253.1|1377147_1378632_-	PBP 5 synthesis repressor	NA	NA	NA	NA	NA
SQF67254.1|1378862_1379354_-	shikimate kinase	NA	NA	NA	NA	NA
SQF67255.1|1379346_1380639_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF67256.1|1380737_1381694_-	ribonuclease BN	NA	NA	NA	NA	NA
SQF67257.1|1381695_1382556_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF67258.1|1382572_1383856_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF67259.1|1383848_1384403_-	acetyl transferase GNAT family	NA	NA	NA	NA	NA
SQF67260.1|1384649_1386503_-	immunoglobulin G-binding protein	NA	NA	NA	NA	NA
SQF67261.1|1386563_1386680_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF67262.1|1386977_1388768_-	glycosyl hydrolase, family 3	NA	NA	NA	NA	NA
SQF67263.1|1388884_1389688_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SQF67264.1|1389956_1390796_-	D-mannonate oxidoreductase	NA	NA	NA	NA	NA
SQF67265.1|1390810_1391905_-	mannonate dehydratase	NA	NA	NA	NA	NA
SQF67266.1|1391999_1393397_-	uronate isomerase	NA	NA	NA	NA	NA
SQF67267.1|1393426_1394044_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
SQF67268.1|1394172_1394844_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF67269.1|1394885_1396676_-	Beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	44.6	1.1e-135
SQF67270.1|1396698_1397727_-	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA	NA
SQF67271.1|1397879_1399424_-	sugar/sodium symporter	NA	NA	NA	NA	NA
SQF67272.1|1399769_1401029_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF67273.1|1401215_1402412_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	66.7	3.6e-140
SQF67274.1|1402905_1405272_-	internalin protein	NA	NA	NA	NA	NA
SQF67275.1|1405447_1406389_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF67276.1|1406709_1407426_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67277.1|1407474_1407843_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67278.1|1408041_1408428_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67279.1|1408421_1408904_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67280.1|1409079_1410759_-	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	40.9	1.0e-47
SQF67281.1|1410758_1411256_-	GAF domain-containing proteins	NA	NA	NA	NA	NA
SQF67282.1|1411395_1412211_+	membrane protein	NA	NA	NA	NA	NA
SQF67283.1|1412255_1412528_-	membrane protein	NA	NA	NA	NA	NA
SQF67284.1|1412587_1413214_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	1.3e-35
SQF67285.1|1413311_1414397_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.6	5.8e-36
SQF67286.1|1414676_1415963_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
SQF67287.1|1416048_1417476_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF67288.1|1417642_1419376_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF67289.1|1419380_1419644_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF67290.1|1419832_1420966_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	1503813	1548086	2255201	tRNA,transposase	Klosneuvirus(12.5%)	43	NA	NA
SQF67368.1|1503813_1506615_-|tRNA	isoleucyl-tRNA synthetase	tRNA	A0A1V0SJ93	Klosneuvirus	27.3	5.3e-89
SQF67369.1|1507645_1508437_-	RNA-binding protein ylmH	NA	NA	NA	NA	NA
SQF67370.1|1508436_1508691_-	YggT family protein	NA	NA	NA	NA	NA
SQF67371.1|1508696_1509356_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF67372.1|1509368_1510040_-	pyridoxaL 5'-phosphate dependent enzyme class III family protein	NA	NA	NA	NA	NA
SQF67373.1|1510042_1511362_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SQF67374.1|1511385_1512750_-	cell division protein	NA	NA	NA	NA	NA
SQF67375.1|1512960_1514109_-	cell division protein FtsQ	NA	NA	NA	NA	NA
SQF67376.1|1514109_1515192_-	UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase	NA	NA	NA	NA	NA
SQF67377.1|1515191_1516550_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA	NA
SQF67378.1|1516795_1518445_-	Kyphoscoliosis peptidase	NA	NA	NA	NA	NA
SQF67379.1|1518704_1518956_-	membrane protein	NA	NA	NA	NA	NA
SQF67380.1|1519060_1520902_-	BipA family GTPase	NA	A0A1B0RXH7	Streptococcus_phage	45.0	5.4e-18
SQF67381.1|1521091_1521472_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
SQF67382.1|1521481_1522453_-	glucokinase/xylose repressor	NA	NA	NA	NA	NA
SQF67383.1|1522457_1522661_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF67384.1|1522802_1523330_-	Dps-like peroxide resistance protein Dpr	NA	NA	NA	NA	NA
SQF67385.1|1523548_1524184_+	leader peptidase (prepilin peptidase) / N-methyltransferase	NA	NA	NA	NA	NA
SQF67386.1|1524219_1525956_-	ABC transporter ATP-binding protein exp8	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.0	2.3e-18
SQF67387.1|1525942_1527691_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.4	3.1e-47
SQF67388.1|1528305_1529388_-	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA
SQF67389.1|1529391_1530006_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF67390.1|1530375_1531635_-	Transposase DDE domain	NA	NA	NA	NA	NA
SQF67391.1|1531975_1533235_-	Transposase DDE domain	NA	NA	NA	NA	NA
SQF67392.1|1533351_1533492_-	hupothetical protein	NA	NA	NA	NA	NA
SQF67393.1|1533496_1534630_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67394.1|1534675_1534819_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF67395.1|1535195_1535312_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF67396.1|1535405_1535801_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF67397.1|1536025_1536991_-	D-ribose-binding protein	NA	NA	NA	NA	NA
SQF67398.1|1537069_1538011_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
SQF67399.1|1538012_1539491_-	D-xylose ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.5	2.1e-12
SQF67400.1|1539506_1539905_-	D-ribose pyranase	NA	NA	NA	NA	NA
SQF67401.1|1539879_1540791_-	ribokinase	NA	NA	NA	NA	NA
SQF67402.1|1540783_1541767_-	ribose transport operon repressor	NA	NA	NA	NA	NA
SQF67403.1|1542047_1543085_-	ATP-dependent endopeptidase	NA	NA	NA	NA	NA
SQF67404.1|1543071_1543563_-	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	34.2	7.9e-17
SQF67405.1|1543552_1544101_-	type II DNA modification methyltransferase	NA	NA	NA	NA	NA
SQF67406.1|1544284_1545277_-	asparagine synthetase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	38.9	2.1e-53
SQF67407.1|1545602_1546553_-	carbamate kinase	NA	NA	NA	NA	NA
SQF67408.1|1546856_1547432_+|transposase	transposase	transposase	Q9JMN8	Wolbachia_phage	36.0	1.1e-22
SQF67409.1|1547480_1547597_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF67410.1|1547690_1548086_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	1859882	1905032	2255201	tRNA,integrase,transposase,protease	Bacillus_phage(15.38%)	45	1880905:1880920	1895769:1895784
SQF67684.1|1859882_1860191_-|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF67685.1|1860347_1861256_+	ribonuclease HIII	NA	NA	NA	NA	NA
SQF67686.1|1861267_1861861_+	signal peptidase I	NA	NA	NA	NA	NA
SQF67687.1|1861920_1864374_+	Exodeoxyribonuclease V alpha chain	NA	A0A0K2FLP8	Brevibacillus_phage	27.1	3.8e-59
SQF67688.1|1864463_1864952_+	membrane protein	NA	NA	NA	NA	NA
SQF67689.1|1865040_1866138_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQF67690.1|1866346_1868674_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	33.8	3.2e-116
SQF67691.1|1868778_1869231_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQF67692.1|1869354_1871262_-	alpha amylase	NA	NA	NA	NA	NA
SQF67693.1|1871348_1872920_-	ABC-type sugar transport system, periplasmic component	NA	NA	NA	NA	NA
SQF67694.1|1872975_1873638_-	membrane protein	NA	NA	NA	NA	NA
SQF67695.1|1873649_1874549_-	ABC transporter permease ytcP	NA	NA	NA	NA	NA
SQF67696.1|1874561_1875500_-	polysaccharide ABC transporter permease	NA	NA	NA	NA	NA
SQF67697.1|1876107_1877139_+	regulatory protein	NA	NA	NA	NA	NA
SQF67698.1|1877250_1878186_-	beta-lactamase family protein	NA	NA	NA	NA	NA
SQF67699.1|1878182_1878935_-	C3-degrading proteinase	NA	NA	NA	NA	NA
SQF67700.1|1879160_1880102_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF67701.1|1880266_1880641_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	47.9	3.0e-24
1880905:1880920	attL	ACTAAACTAGACAGAA	NA	NA	NA	NA
SQF67702.1|1880961_1881093_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF67703.1|1881290_1882070_+|transposase	transposase for insertion sequence element IS629	transposase	A0A2I7SC85	Paenibacillus_phage	50.0	2.7e-67
SQF67704.1|1882354_1883203_-	Aquaporin-4	NA	NA	NA	NA	NA
SQF67705.1|1883329_1885612_+	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
SQF67706.1|1885684_1886077_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
SQF67707.1|1886247_1886469_-	helix-turn-helix family protein	NA	U5U3X7	Lactobacillus_phage	44.1	9.7e-07
SQF67708.1|1886637_1887012_+	Transcriptional regulator	NA	A0A097BY95	Leuconostoc_phage	53.7	4.9e-19
SQF67709.1|1887260_1887854_-	Chromosome assembly-related protein	NA	NA	NA	NA	NA
SQF67710.1|1888037_1889402_-	sensor histidine kinase	NA	NA	NA	NA	NA
SQF67711.1|1889402_1890086_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQF67712.1|1890335_1891364_-	histidine kinase protein	NA	A0A1V0SGX0	Hokovirus	26.1	5.0e-13
SQF67713.1|1891365_1892052_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.3	9.3e-32
SQF67714.1|1892170_1892722_-	exported protein	NA	NA	NA	NA	NA
SQF67715.1|1893046_1893793_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
SQF67716.1|1893793_1894702_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.3	3.4e-37
SQF67717.1|1894784_1895486_-|integrase	integrase core domain protein	integrase	A0A0C5AEB1	Paenibacillus_phage	43.6	2.2e-36
SQF67718.1|1895966_1896098_+	Uncharacterised protein	NA	NA	NA	NA	NA
1895769:1895784	attR	TTCTGTCTAGTTTAGT	NA	NA	NA	NA
SQF67719.1|1896495_1896795_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF67720.1|1896843_1897578_-	HTH-type transcriptional regulator hmrR	NA	NA	NA	NA	NA
SQF67721.1|1897730_1898318_-	DNA polymerase III subunit epsilon	NA	A0A0A8WJ41	Clostridium_phage	28.0	4.6e-11
SQF67722.1|1898365_1898896_-	DNA-binding protein	NA	NA	NA	NA	NA
SQF67723.1|1898976_1899066_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF67724.1|1899070_1900204_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67725.1|1900425_1901601_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	tRNA	A0A2H4PQX1	Staphylococcus_phage	55.4	5.0e-17
SQF67726.1|1901848_1903108_+	Transposase DDE domain	NA	NA	NA	NA	NA
SQF67727.1|1903417_1903687_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQF67728.1|1904015_1905032_-|protease	metalloendopeptidase, glycoprotease family protein	protease	A0A0R6PI74	Moraxella_phage	42.5	7.3e-57
>prophage 12
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	2031376	2106894	2255201	integrase,head,terminase,transposase,capsid,tail	Streptococcus_phage(53.45%)	88	2058778:2058798	2104309:2104329
SQF67850.1|2031376_2032510_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67851.1|2032779_2034045_-	putative immunoglobulin G-binding protein G	NA	NA	NA	NA	NA
SQF67852.1|2034334_2034889_-	transcription antitermination protein	NA	NA	NA	NA	NA
SQF67853.1|2035091_2035268_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF67854.1|2035481_2037830_-	penicillin-binding protein 2A	NA	NA	NA	NA	NA
SQF67855.1|2037868_2038249_-	translation initiation inhibitor	NA	NA	NA	NA	NA
SQF67856.1|2038593_2038785_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF67857.1|2038768_2039680_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQF67858.1|2039781_2041422_-	signal peptide	NA	NA	NA	NA	NA
SQF67859.1|2041703_2043200_+	dipeptidase	NA	NA	NA	NA	NA
SQF67860.1|2043533_2044001_+	MutT/Nudix family protein	NA	NA	NA	NA	NA
SQF67861.1|2044218_2045844_-	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	55.8	5.1e-153
SQF67862.1|2045879_2046170_-	co-chaperonin	NA	NA	NA	NA	NA
SQF67863.1|2046347_2048792_-	negative regulator of genetic competence	NA	A0A223W0B1	Agrobacterium_phage	39.0	5.0e-128
SQF67864.1|2048791_2049253_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF67865.1|2050062_2051037_+	amidohydrolase 2	NA	NA	NA	NA	NA
SQF67866.1|2051168_2051624_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQF67867.1|2051672_2052614_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
SQF67868.1|2052619_2053009_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
SQF67869.1|2053124_2053403_+	acetyltransferase	NA	NA	NA	NA	NA
SQF67870.1|2053704_2054289_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
SQF67871.1|2054276_2054537_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF67872.1|2054548_2056606_+	membrane protein	NA	NA	NA	NA	NA
SQF67873.1|2056738_2057200_+	dioxygenase	NA	NA	NA	NA	NA
SQF67874.1|2057375_2057984_+	Flavin reductase like domain	NA	NA	NA	NA	NA
SQF67875.1|2057996_2058617_+	phospholipase/carboxylesterase	NA	NA	NA	NA	NA
2058778:2058798	attL	AAGGCGGTAGACGGATTTGAA	NA	NA	NA	NA
SQF67876.1|2058847_2059030_-	Paratox	NA	A3F673	Streptococcus_phage	71.7	8.5e-17
SQF67877.1|2059199_2059508_+	Uncharacterised protein	NA	A3F672	Streptococcus_phage	83.3	4.0e-43
SQF67878.1|2059539_2060013_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	96.1	3.0e-82
SQF67879.1|2060014_2060200_+	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	74.1	1.8e-14
SQF67880.1|2060297_2060498_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	81.8	5.3e-20
SQF67881.1|2060657_2060747_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF67882.1|2060751_2061885_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF67883.1|2062007_2062979_-	abortive infection phage resistance protein	NA	A0A059NT88	Lactococcus_phage	42.3	3.3e-75
SQF67884.1|2063284_2064502_-	phage lysin	NA	A0A1P8VVM5	Streptococcus_phage	60.3	1.7e-164
SQF67885.1|2064498_2064612_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	1.2e-08
SQF67886.1|2064615_2064801_-	phage protein	NA	Q938J5	Temperate_phage	91.8	1.2e-23
SQF67887.1|2064797_2065097_-	phage protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
SQF67888.1|2065107_2065728_-	phage protein	NA	Q938J7	Temperate_phage	83.8	4.1e-71
SQF67889.1|2065730_2066159_-	phage protein	NA	A3F661	Streptococcus_phage	96.5	6.0e-69
SQF67890.1|2066170_2068057_-	gp58-like family protein	NA	Q938J9	Temperate_phage	73.7	5.9e-177
SQF67891.1|2068067_2068691_-	phage protein	NA	A3F658	Streptococcus_phage	51.4	1.9e-55
SQF67892.1|2068693_2070091_-	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	43.4	1.2e-70
SQF67893.1|2070087_2072235_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	91.6	0.0e+00
SQF67894.1|2072231_2072948_-	phage protein	NA	Q938K2	Temperate_phage	95.4	3.4e-133
SQF67895.1|2072944_2076205_-	phage protein	NA	Q938K3	Temperate_phage	95.8	0.0e+00
SQF67896.1|2076194_2076776_-	phage Gp15 protein	NA	Q938K4	Temperate_phage	92.7	2.6e-99
SQF67897.1|2076779_2077214_-	phage protein	NA	Q938K5	Temperate_phage	86.1	2.1e-61
SQF67898.1|2077256_2077745_-|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	88.2	2.9e-72
SQF67899.1|2077744_2078143_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	97.7	5.5e-69
SQF67900.1|2078139_2078496_-	phage protein	NA	Q79S88	Temperate_phage	98.3	7.7e-62
SQF67901.1|2078495_2078843_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	96.4	9.4e-57
SQF67902.1|2078817_2079228_-	phage protein	NA	Q938K7	Temperate_phage	86.5	5.9e-50
SQF67903.1|2079244_2079514_-	HeH/LEM domain	NA	K4JTJ0	Streptococcus_phage	42.4	1.7e-05
SQF67904.1|2079523_2080360_-|head	putative major head protein	head	Q79S85	Temperate_phage	95.2	6.3e-139
SQF67905.1|2080363_2080972_-	phage protein	NA	Q938K8	Temperate_phage	94.1	1.1e-89
SQF67906.1|2081107_2081374_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	83.0	3.3e-33
SQF67907.1|2081411_2082356_-|transposase	degenerate transposase	transposase	H7BUM7	unidentified_phage	27.9	5.1e-20
SQF67908.1|2082511_2082739_-	phage protein	NA	NA	NA	NA	NA
SQF67909.1|2082738_2084232_-|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	77.6	3.7e-206
SQF67910.1|2084236_2085688_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	96.3	1.5e-265
SQF67911.1|2085752_2087039_-|terminase	phage terminase	terminase	A0A1S5SA45	Streptococcus_phage	85.0	1.7e-220
SQF67912.1|2087040_2087736_-	phage protein	NA	A0A2H4J4R0	uncultured_Caudovirales_phage	34.5	4.4e-29
SQF67913.1|2087855_2088272_-	phage protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
SQF67914.1|2088268_2088460_-	phage protein	NA	NA	NA	NA	NA
SQF67915.1|2088463_2088730_-	phage protein	NA	A7J287	Streptococcus_phage	63.5	9.2e-20
SQF67916.1|2088726_2088894_-	phage protein	NA	A7J285	Streptococcus_phage	92.7	4.3e-23
SQF67917.1|2088894_2090217_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	98.0	4.6e-253
SQF67918.1|2090213_2090489_-	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQF67919.1|2090855_2093240_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	98.4	2.7e-288
SQF67920.1|2093244_2095167_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQF67921.1|2095209_2095773_-	phage protein	NA	D2J040	Enterococcus_phage	57.9	7.4e-51
SQF67922.1|2095786_2096944_-	phage protein	NA	A7J278	Streptococcus_phage	99.7	1.7e-219
SQF67923.1|2096943_2097243_-	phage protein	NA	A7J277	Streptococcus_phage	93.9	2.0e-39
SQF67924.1|2097330_2097534_-	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
SQF67925.1|2097530_2097683_-	phage protein	NA	A7J275	Streptococcus_phage	100.0	4.4e-19
SQF67926.1|2097679_2098063_-	phage protein	NA	A7J274	Streptococcus_phage	89.8	7.2e-58
SQF67927.1|2098059_2098266_-	phage protein	NA	NA	NA	NA	NA
SQF67928.1|2098258_2098429_-	phage protein	NA	A7J273	Streptococcus_phage	92.9	1.5e-20
SQF67929.1|2098425_2098701_-	phage protein	NA	A7J272	Streptococcus_phage	96.7	2.0e-46
SQF67930.1|2098761_2099562_-	prophage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	48.7	1.4e-63
SQF67931.1|2099572_2099764_-	phage protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
SQF67932.1|2100521_2100869_+	Cro/CI family phage transcriptional regulator	NA	A0A1S5SFC6	Streptococcus_phage	74.6	1.1e-41
SQF67933.1|2100872_2101259_+	peptidase	NA	Q7Y4M1	Streptococcus_phage	58.4	2.2e-38
SQF67934.1|2101276_2102869_+	Uncharacterised protein	NA	A0A1S5SA14	Streptococcus_phage	70.1	1.8e-142
SQF67935.1|2103129_2104203_+|integrase	integrase	integrase	B3GVW7	Streptococcus_phage	61.9	4.0e-122
SQF67936.1|2104780_2105341_+	peroxiredoxin	NA	NA	NA	NA	NA
2104309:2104329	attR	AAGGCGGTAGACGGATTTGAA	NA	NA	NA	NA
SQF67937.1|2105361_2106894_+	NADH dehydrogenase	NA	V9VEY6	Lactococcus_phage	29.4	1.5e-21
>prophage 13
LS483361	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1	2255201	2152723	2164222	2255201	tRNA	Streptococcus_phage(50.0%)	9	NA	NA
SQF67977.1|2152723_2155279_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	25.0	6.6e-38
SQF67978.1|2155265_2155619_-	membrane protein	NA	NA	NA	NA	NA
SQF67979.1|2155615_2156053_-	arginine repressor	NA	NA	NA	NA	NA
SQF67980.1|2156340_2158032_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.4	4.9e-74
SQF67981.1|2158101_2159499_-	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.3	3.8e-48
SQF67982.1|2159675_2160590_-	transporter	NA	M1Q1P6	Streptococcus_phage	40.8	3.0e-54
SQF67983.1|2160619_2161519_-	hypothetical membrane spanning protein	NA	M1Q1P6	Streptococcus_phage	34.9	7.9e-47
SQF67984.1|2161539_2162481_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF67985.1|2162473_2164222_-|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SJ84	Klosneuvirus	25.7	1.0e-13
