The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	36592	49026	1906305		Synechococcus_phage(28.57%)	8	NA	NA
SQF61911.1|36592_40366_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	2.7e-40
SQF61912.1|40599_42054_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF61913.1|42081_43104_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	9.0e-63
SQF61914.1|43271_43826_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	4.0e-25
SQF61915.1|44009_45557_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.8	2.2e-44
SQF61916.1|45614_46739_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	1.0e-06
SQF61917.1|46991_48257_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF61918.1|48414_49026_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	758458	808026	1906305	terminase,capsid,integrase,portal,protease,tail	Streptococcus_phage(55.77%)	66	747586:747602	796989:797005
747586:747602	attL	AACTTGTTAAAAAAGAT	NA	NA	NA	NA
SQF62567.1|758458_760723_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF62568.1|760979_761600_-	phage protein	NA	NA	NA	NA	NA
SQF62569.1|761962_763087_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	98.1	7.7e-209
SQF62570.1|763170_763476_-	phage membrane protein	NA	NA	NA	NA	NA
SQF62571.1|763485_764274_-	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQF62572.1|764448_764550_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62573.1|764646_764805_+	phage protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQF62574.1|764838_765003_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62575.1|764938_765724_-	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	4.8e-48
SQF62576.1|765780_765927_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62577.1|765923_766406_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62578.1|766479_766719_+	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQF62579.1|766730_766976_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF62580.1|767199_767550_+	phage protein	NA	NA	NA	NA	NA
SQF62581.1|767524_767839_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62582.1|768245_768542_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
SQF62583.1|768538_768676_+	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
SQF62584.1|768659_768773_+	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	75.0	3.4e-08
SQF62585.1|768756_769086_+	phage protein	NA	J7KBZ0	Streptococcus_phage	41.8	3.6e-13
SQF62586.1|769085_769280_+	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQF62587.1|769276_769561_+	phage protein	NA	NA	NA	NA	NA
SQF62588.1|769557_770241_+	phage protein	NA	J7KC09	Streptococcus_phage	98.2	4.6e-124
SQF62589.1|770315_771680_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.1	3.8e-194
SQF62590.1|771684_772167_+	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	1.7e-59
SQF62591.1|772184_773738_+	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	1.5e-210
SQF62592.1|774006_774876_+	phage protein	NA	A0A1P8BME8	Lactococcus_phage	65.2	7.5e-103
SQF62593.1|774829_775180_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
SQF62594.1|775163_775520_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
SQF62595.1|775759_775930_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	98.2	1.6e-25
SQF62596.1|776040_776454_+	phage protein	NA	Q938M1	Temperate_phage	63.1	7.1e-35
SQF62597.1|776450_776657_+	phage protein	NA	Q938M0	Temperate_phage	100.0	1.0e-10
SQF62598.1|776680_777121_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF62599.1|777767_778106_+	Phage endonuclease	NA	J7KH36	Streptococcus_phage	97.2	2.4e-57
SQF62600.1|778276_778744_+|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF62601.1|778746_778977_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62602.1|778986_780735_+|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.0	0.0e+00
SQF62603.1|780731_780902_+	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF62604.1|780894_781119_+	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF62605.1|781152_782373_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
SQF62606.1|782350_783016_+|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	1.9e-90
SQF62607.1|783040_784228_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
SQF62608.1|784372_784675_+	phage protein	NA	J7KC36	Streptococcus_phage	88.8	5.7e-42
SQF62609.1|784671_785019_+	phage protein	NA	J7KJ42	Streptococcus_phage	87.3	6.5e-50
SQF62610.1|785015_785393_+	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	3.7e-46
SQF62611.1|785389_785815_+	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQF62612.1|785830_786439_+|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQF62613.1|786491_786818_+	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQF62614.1|787027_790951_+|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.6	1.9e-238
SQF62615.1|790950_791658_+	phage protein	NA	Q938K2	Temperate_phage	69.4	5.4e-91
SQF62616.1|791654_793799_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	97.5	0.0e+00
SQF62617.1|793795_794809_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	99.1	2.3e-183
SQF62618.1|794823_796710_+	gp58-like family protein	NA	Q938J9	Temperate_phage	72.3	1.9e-159
SQF62619.1|796718_796880_+	phage protein	NA	NA	NA	NA	NA
SQF62620.1|796882_797494_+	phage protein	NA	Q938J7	Temperate_phage	90.6	4.4e-81
796989:797005	attR	AACTTGTTAAAAAAGAT	NA	NA	NA	NA
SQF62621.1|797503_797776_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF62622.1|797772_798000_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF62623.1|798008_798116_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	5.5e-08
SQF62624.1|798116_799451_+	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
SQF62625.1|799526_800234_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF62626.1|800344_801103_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF62627.1|801342_801531_+	phage protein	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
SQF62628.1|802121_802736_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQF62629.1|802866_803652_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF62630.1|803661_804360_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	5.1e-09
SQF62631.1|804359_804731_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF62632.1|804915_808026_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	1.4e-119
>prophage 3
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1045078	1081137	1906305	tail,integrase,terminase,holin	Streptococcus_phage(68.63%)	60	1055448:1055463	1080215:1080230
SQF62867.1|1045078_1045417_-	Phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	92.9	4.6e-56
SQF62868.1|1045456_1045831_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	99.2	1.8e-66
SQF62869.1|1045836_1045947_-	putative phage membrane protein	NA	NA	NA	NA	NA
SQF62870.1|1045948_1046404_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	82.1	1.4e-63
SQF62871.1|1046413_1047025_-	phage protein	NA	Q938J7	Temperate_phage	87.7	7.7e-78
SQF62872.1|1047027_1047189_-	phage protein	NA	NA	NA	NA	NA
SQF62873.1|1047200_1048985_-	gp58-like family protein	NA	Q938J9	Temperate_phage	48.7	2.8e-96
SQF62874.1|1048999_1050022_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	83.4	1.6e-149
SQF62875.1|1050021_1051986_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	50.8	1.3e-102
SQF62876.1|1051982_1052678_-	phage protein	NA	A0A1B1P761	Bacillus_phage	29.6	2.6e-05
SQF62877.1|1052674_1055032_-|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	48.4	3.9e-138
SQF62878.1|1055031_1055403_-	phage protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
SQF62879.1|1055417_1055681_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
1055448:1055463	attL	AATTTCTTTGATTTCT	NA	NA	NA	NA
SQF62880.1|1055691_1056282_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	61.4	1.0e-58
SQF62881.1|1056297_1056633_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF62882.1|1056633_1056870_-	phage protein	NA	M1NRG9	Streptococcus_phage	70.5	9.6e-21
SQF62883.1|1056862_1057201_-	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQF62884.1|1057160_1057583_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.9	4.8e-47
SQF62885.1|1057603_1057732_-	Uncharacterised protein	NA	A0A0B5A554	Streptococcus_phage	61.9	5.2e-05
SQF62886.1|1057733_1058627_-	phage structural protein	NA	A0A126GGI3	Streptococcus_phage	77.4	6.3e-129
SQF62887.1|1058630_1059095_-	phage protein	NA	A0A141E167	Streptococcus_phage	57.8	6.3e-40
SQF62888.1|1059175_1060591_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	8.5e-213
SQF62889.1|1060672_1060909_-	phage protein	NA	M1IRA5	Streptococcus_phage	80.3	1.2e-31
SQF62890.1|1060910_1061177_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF62891.1|1061169_1061349_-	phage protein	NA	NA	NA	NA	NA
SQF62892.1|1061398_1061623_-	phage protein	NA	NA	NA	NA	NA
SQF62893.1|1061628_1063122_-	phage protein	NA	M1Q184	Streptococcus_phage	55.6	3.7e-89
SQF62894.1|1063114_1064383_-	structural phage protein	NA	A0A1X9I693	Streptococcus_phage	76.2	2.4e-190
SQF62895.1|1064379_1064736_-	phage protein	NA	A0A0B5A7G9	Streptococcus_phage	40.9	1.7e-08
SQF62896.1|1065337_1065757_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	8.7e-57
SQF62897.1|1066026_1066125_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62898.1|1066121_1066415_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	99.0	2.7e-49
SQF62899.1|1066462_1067227_-	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	2.8e-133
SQF62900.1|1067216_1067699_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF62901.1|1067702_1067972_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.0	1.9e-25
SQF62902.1|1067976_1068162_-	phage protein	NA	A3F626	Streptococcus_phage	83.8	3.5e-10
SQF62903.1|1068148_1068661_-	phage protein	NA	A0A1S5S8V7	Streptococcus_phage	71.4	3.2e-61
SQF62904.1|1068657_1068999_-	phage protein	NA	M1PKX3	Streptococcus_phage	37.5	3.7e-13
SQF62905.1|1069193_1070222_-	phage protein	NA	E8ZD61	Streptococcus_phage	65.9	9.5e-121
SQF62906.1|1070231_1071056_-	phage protein RecT family	NA	A0A1S5SFP4	Streptococcus_phage	77.6	1.1e-114
SQF62907.1|1071058_1071562_-	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	1.1e-45
SQF62908.1|1071564_1071819_-	phage protein	NA	Q938N0	Temperate_phage	89.3	1.8e-36
SQF62909.1|1071829_1071970_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	2.6e-05
SQF62910.1|1071966_1072200_-	phage protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
SQF62911.1|1072180_1072570_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	82.9	2.9e-54
SQF62912.1|1072662_1072932_-	phage replication protein	NA	A0A060QMU7	Streptococcus_phage	46.3	2.5e-12
SQF62913.1|1073031_1073217_-	phage protein	NA	Q938N3	Temperate_phage	90.2	1.8e-22
SQF62914.1|1073218_1073530_-	phage protein	NA	A1EAC3	Streptococcus_phage	86.4	1.7e-49
SQF62915.1|1073636_1073819_+	phage membrane protein	NA	NA	NA	NA	NA
SQF62916.1|1073815_1073947_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62917.1|1073959_1074676_-	phage antirepressor KilAC domain-containing protein	NA	C9WB91	Streptococcus_virus	76.3	4.7e-103
SQF62918.1|1074687_1074879_-	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQF62919.1|1075185_1075335_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62920.1|1076107_1076380_+	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	73.9	2.2e-32
SQF62921.1|1076383_1076764_+	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQF62922.1|1076775_1077042_+	phage protein	NA	NA	NA	NA	NA
SQF62923.1|1077168_1078308_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	55.8	4.4e-119
SQF62924.1|1078390_1079431_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.5e-68
SQF62925.1|1079674_1080268_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
1080215:1080230	attR	AATTTCTTTGATTTCT	NA	NA	NA	NA
SQF62926.1|1080267_1081137_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	5.4e-101
>prophage 4
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1091815	1149229	1906305	tRNA,head,transposase,protease	Bacillus_virus(21.43%)	55	NA	NA
SQF62938.1|1091815_1092715_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF62939.1|1092848_1093025_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF62940.1|1093142_1094051_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF62941.1|1094287_1094707_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF62942.1|1095017_1096004_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF62943.1|1096202_1096505_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62944.1|1097051_1098257_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF62945.1|1098648_1098879_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF62946.1|1098942_1099965_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF62947.1|1100087_1102511_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	1.2e-97
SQF62948.1|1102744_1103563_-	phosphate ABC transporter ATPase	NA	NA	NA	NA	NA
SQF62949.1|1103629_1105579_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.8	3.5e-124
SQF62950.1|1105713_1106355_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF62951.1|1106412_1107681_-	dihydroorotase	NA	NA	NA	NA	NA
SQF62952.1|1107812_1108466_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	2.3e-40
SQF62953.1|1108598_1109249_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF62954.1|1109277_1110141_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF62955.1|1110258_1111713_-	amidase	NA	NA	NA	NA	NA
SQF62956.1|1111909_1112539_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF62957.1|1112596_1113289_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF62958.1|1113565_1114102_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF62959.1|1114374_1115229_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF62960.1|1115308_1116097_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF62961.1|1116089_1116860_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF62962.1|1117387_1118197_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	8.7e-53
SQF62963.1|1118180_1118621_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
SQF62964.1|1118639_1119851_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF62965.1|1119927_1120611_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF62966.1|1120988_1123088_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.4	3.3e-120
SQF62967.1|1123145_1123889_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF62968.1|1124036_1124636_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF62969.1|1124645_1125875_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF62970.1|1126004_1126175_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF62971.1|1126194_1126692_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF62972.1|1126771_1127611_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF62973.1|1127819_1128995_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF62974.1|1128981_1130259_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF62975.1|1130488_1131478_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF62976.1|1131464_1132478_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF62977.1|1132470_1133415_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF62978.1|1133396_1134275_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF62979.1|1134568_1135801_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF62980.1|1135809_1136478_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF62981.1|1136480_1137131_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF62982.1|1137350_1139363_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF62983.1|1139444_1139855_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF62984.1|1140746_1142624_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.6	6.7e-64
SQF62985.1|1142620_1143829_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF62986.1|1143953_1144802_-	degV family protein	NA	NA	NA	NA	NA
SQF62987.1|1144801_1145182_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF62988.1|1145409_1145586_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF62989.1|1146088_1147108_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF62990.1|1147227_1147974_+	Exotoxin type C precursor	NA	Q938J1	Temperate_phage	82.0	1.2e-112
SQF62991.1|1148138_1148813_+	exotoxin J	NA	NA	NA	NA	NA
SQF62992.1|1149109_1149229_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 5
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1185609	1196212	1906305		Streptococcus_phage(57.14%)	9	NA	NA
SQF63027.1|1185609_1186752_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
SQF63028.1|1186986_1187427_+	membrane protein	NA	NA	NA	NA	NA
SQF63029.1|1187456_1188725_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF63030.1|1188812_1190165_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	1.6e-30
SQF63031.1|1190385_1190727_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF63032.1|1190787_1191954_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF63033.1|1192047_1192734_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	5.4e-88
SQF63034.1|1192730_1193894_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	5.8e-143
SQF63035.1|1194001_1196212_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 6
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1227907	1276958	1906305	terminase,tRNA,holin,capsid,head,tail	Temperate_phage(60.0%)	72	NA	NA
SQF63063.1|1227907_1228825_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	37.5	2.1e-34
SQF63064.1|1228928_1229597_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	1.3e-30
SQF63065.1|1229606_1230683_-	permease family protein	NA	NA	NA	NA	NA
SQF63066.1|1230755_1231142_-	Probable type II DNA modification enzyme	NA	NA	NA	NA	NA
SQF63067.1|1231134_1231512_-	salt-stress induced protein	NA	NA	NA	NA	NA
SQF63068.1|1231760_1231943_-	phage protein	NA	A3F673	Streptococcus_phage	78.3	6.9e-19
SQF63069.1|1232153_1232393_+	Phage protein	NA	NA	NA	NA	NA
SQF63070.1|1232432_1232906_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	92.3	1.6e-78
SQF63071.1|1232907_1233264_+	phage protein	NA	NA	NA	NA	NA
SQF63072.1|1233331_1234198_-	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQF63073.1|1234185_1234710_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF63074.1|1234849_1236052_-	phage associated protein	NA	Q938J4	Temperate_phage	97.5	4.6e-236
SQF63075.1|1236167_1236395_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF63076.1|1236391_1236667_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF63077.1|1236676_1237294_-	phage protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
SQF63078.1|1237296_1237728_-	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF63079.1|1237739_1239623_-	phage protein	NA	Q938J9	Temperate_phage	96.2	1.6e-251
SQF63080.1|1239632_1240649_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	98.2	1.1e-180
SQF63081.1|1240645_1242790_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	98.5	0.0e+00
SQF63082.1|1242786_1243503_-	phage protein	NA	Q938K2	Temperate_phage	100.0	2.9e-137
SQF63083.1|1243499_1246760_-	phage protein	NA	Q938K3	Temperate_phage	97.1	0.0e+00
SQF63084.1|1246749_1247331_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
SQF63085.1|1247334_1247769_-	phage protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
SQF63086.1|1247807_1248293_-|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
SQF63087.1|1248292_1248691_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
SQF63088.1|1248687_1249044_-	phage protein	NA	Q79S88	Temperate_phage	98.3	5.0e-61
SQF63089.1|1249043_1249403_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQF63090.1|1249365_1249782_-	phage protein	NA	Q938K7	Temperate_phage	99.1	4.3e-56
SQF63091.1|1249835_1250654_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQF63092.1|1250657_1251266_-	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQF63093.1|1251397_1251664_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF63094.1|1251750_1251978_-	phage protein	NA	NA	NA	NA	NA
SQF63095.1|1251977_1253471_-|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	80.0	3.1e-213
SQF63096.1|1253475_1254978_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.6	5.9e-281
SQF63097.1|1254991_1256203_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SQF63098.1|1256285_1256759_-	phage protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
SQF63099.1|1256809_1257187_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SQF63100.1|1257639_1258317_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
SQF63101.1|1258295_1258814_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
SQF63102.1|1259726_1260164_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
SQF63103.1|1260430_1261066_-	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
SQF63104.1|1261067_1261352_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
SQF63105.1|1261361_1261631_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	91.0	1.2e-43
SQF63106.1|1261627_1261912_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	1.0e-48
SQF63107.1|1261905_1262103_-	phage protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
SQF63108.1|1262089_1262602_-	phage protein	NA	Q708P9	Streptococcus_phage	73.8	3.4e-63
SQF63109.1|1262598_1262937_-	phage protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
SQF63110.1|1263113_1263281_-	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	55.6	6.0e-09
SQF63111.1|1263290_1264088_-	phage protein	NA	J7KGZ1	Streptococcus_phage	82.3	5.8e-126
SQF63112.1|1264080_1264281_-	phage protein	NA	NA	NA	NA	NA
SQF63113.1|1264277_1265204_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF63114.1|1265206_1265536_-	phage protein	NA	J7KGX3	Streptococcus_phage	87.2	1.1e-46
SQF63115.1|1265591_1265798_-	phage protein	NA	NA	NA	NA	NA
SQF63116.1|1265806_1265947_-	phage protein	NA	NA	NA	NA	NA
SQF63117.1|1265952_1266165_-	phage protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
SQF63118.1|1266145_1266532_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	1.1e-48
SQF63119.1|1266677_1266929_-	replication protein	NA	A0A141E1D1	Streptococcus_phage	39.0	7.4e-11
SQF63120.1|1267028_1267214_-	phage protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
SQF63121.1|1267242_1267500_-	phage protein	NA	NA	NA	NA	NA
SQF63122.1|1267605_1267821_+	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SQF63123.1|1267794_1268043_-	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SQF63124.1|1268121_1268322_+	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	1.1e-20
SQF63125.1|1268318_1268468_-	phage protein	NA	Q938N4	Temperate_phage	100.0	1.8e-20
SQF63126.1|1268500_1269229_-	phage antirepressor protein	NA	Q938N5	Temperate_phage	99.6	3.4e-133
SQF63127.1|1269239_1269431_-	phage protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
SQF63128.1|1269736_1269886_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF63129.1|1270579_1270939_+	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
SQF63130.1|1270952_1271333_+	phage protein	NA	Q938N7	Temperate_phage	100.0	5.3e-69
SQF63131.1|1271343_1271865_+	phage protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
SQF63132.1|1272040_1273138_+	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	99.7	6.0e-206
SQF63133.1|1273266_1275672_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF63134.1|1275881_1276958_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	2.8e-30
>prophage 7
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1420490	1426861	1906305	portal	Streptococcus_phage(66.67%)	12	NA	NA
SQF63260.1|1420490_1421168_-	asparagine synthetase A	NA	A0A167RLM0	Powai_lake_megavirus	28.6	2.4e-11
SQF63261.1|1421191_1421530_-	huntington interacting protein HYPE	NA	NA	NA	NA	NA
SQF63262.1|1421922_1422231_-	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.9	5.7e-21
SQF63263.1|1422296_1422749_-|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	85.6	4.4e-62
SQF63264.1|1422843_1423125_-	cytoplasmic protein	NA	E4ZFM1	Streptococcus_phage	50.7	3.2e-07
SQF63265.1|1423143_1423449_-	prophage LambdaSa04, RelE/ParE family protein	NA	NA	NA	NA	NA
SQF63266.1|1423448_1423751_-	Plasmid stabilization system antitoxin protein	NA	NA	NA	NA	NA
SQF63267.1|1423805_1423964_-	prophage LambdaSa04	NA	M1PSF2	Streptococcus_phage	86.5	1.0e-18
SQF63268.1|1424006_1424891_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF63269.1|1424890_1425121_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF63270.1|1425111_1426662_+	ATPase	NA	NA	NA	NA	NA
SQF63271.1|1426651_1426861_+	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	63.1	3.4e-17
>prophage 8
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1531367	1537401	1906305		Streptococcus_phage(100.0%)	9	NA	NA
SQF63372.1|1531367_1532195_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	3.2e-127
SQF63373.1|1532268_1532625_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	1.7e-40
SQF63374.1|1532924_1533554_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF63375.1|1533600_1533993_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF63376.1|1534019_1534883_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQF63377.1|1534887_1535211_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF63378.1|1535614_1535854_-	Tpl protein	NA	NA	NA	NA	NA
SQF63379.1|1535872_1536748_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	48.6	3.7e-73
SQF63380.1|1536765_1537401_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	64.4	1.4e-66
>prophage 9
LS483360	Streptococcus pyogenes strain NCTC10876 genome assembly, chromosome: 1	1906305	1761398	1799665	1906305	terminase,capsid,integrase,portal,head,protease,tail	Streptococcus_phage(82.98%)	51	1765269:1765294	1796951:1796976
SQF63581.1|1761398_1763843_-	clp amino terminal domain-containing protein	NA	A0A223W0B1	Agrobacterium_phage	39.0	4.1e-122
SQF63582.1|1763842_1764304_-	transcriptional regulator	NA	NA	NA	NA	NA
1765269:1765294	attL	ATTTGCCCACCATTTGCCCACCAACT	NA	NA	NA	NA
SQF63583.1|1765292_1766363_-|integrase	integrase	integrase	A0A1P8VVR7	Streptococcus_phage	48.3	9.6e-92
SQF63584.1|1766490_1766793_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	53.6	1.5e-21
SQF63585.1|1766785_1767172_-	phage protein	NA	Q938N7	Temperate_phage	61.6	2.4e-37
SQF63586.1|1767175_1767526_-	repressor - phage associated	NA	A0A1S5S8C4	Streptococcus_phage	70.6	8.1e-40
SQF63587.1|1767922_1768132_+	putative phage DNA binding protein	NA	A0A1P8VVQ4	Streptococcus_phage	88.2	3.0e-26
SQF63588.1|1768131_1768494_+	phage protein	NA	A0A1P8VVU1	Streptococcus_phage	68.8	6.6e-37
SQF63589.1|1768515_1768800_+	DNA-binding phage protein	NA	B3GVX8	Streptococcus_phage	81.9	3.5e-41
SQF63590.1|1768826_1769045_+	Uncharacterised protein	NA	A0A1P8VVV1	Streptococcus_phage	83.3	3.9e-24
SQF63591.1|1769053_1770400_+	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	83.7	9.3e-209
SQF63592.1|1770386_1771133_+	DNA replication protein, putative	NA	A0A1P8VVR3	Streptococcus_phage	96.0	3.5e-133
SQF63593.1|1771133_1771955_+	prophage LambdaSa2, DNA replication protein DnaC	NA	A0A1P8VVV9	Streptococcus_phage	95.2	1.1e-148
SQF63594.1|1771954_1772182_+	phage protein	NA	C5J991	Streptococcus_phage	46.6	1.3e-11
SQF63595.1|1772195_1772366_+	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQF63596.1|1772362_1772632_+	phage membrane protein	NA	A7J287	Streptococcus_phage	77.5	1.4e-28
SQF63597.1|1772634_1773384_+	Adenine-specific methyltransferase	NA	Q9MCL7	Streptococcus_virus	89.5	7.3e-131
SQF63598.1|1773431_1774178_+	phage protein	NA	A0A2H4JBN7	uncultured_Caudovirales_phage	43.1	5.4e-25
SQF63599.1|1774189_1774408_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF63600.1|1774404_1774797_+	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	71.7	4.1e-48
SQF63601.1|1774810_1775089_+	Uncharacterised protein	NA	A3F632	Streptococcus_phage	96.7	9.6e-44
SQF63602.1|1775085_1775187_+	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	93.1	1.3e-06
SQF63603.1|1775183_1775411_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF63604.1|1775382_1775847_+	transcriptional activator-phage associated	NA	A0A1P8VVT5	Streptococcus_phage	92.2	5.8e-78
SQF63605.1|1775956_1776499_+|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	integrase	A0A1S5SCL7	Streptococcus_phage	98.9	8.3e-100
SQF63606.1|1776668_1776851_+	Uncharacterised protein	NA	A0A1S5SAV8	Streptococcus_phage	51.7	6.5e-09
SQF63607.1|1777557_1778037_+	Uncharacterised protein	NA	A0A1S5SCZ6	Streptococcus_phage	98.7	1.4e-79
SQF63608.1|1778029_1779742_+|terminase	prophage LambdaSa2, terminase large subunit	terminase	A0A1S5SCW2	Streptococcus_phage	97.0	0.0e+00
SQF63609.1|1779750_1780893_+|portal	phage portal protein, HK97 family	portal	A0A1P8VVT4	Streptococcus_phage	98.2	5.3e-213
SQF63610.1|1780943_1781486_+|protease	prophage LambdaSa2, protease	protease	A0A1P8VVX2	Streptococcus_phage	96.7	6.8e-94
SQF63611.1|1781496_1782759_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1P8VVT0	Streptococcus_phage	85.6	5.8e-197
SQF63612.1|1782778_1783117_+	Uncharacterised protein	NA	A0A1P8VVS7	Streptococcus_phage	80.6	1.2e-45
SQF63613.1|1783113_1783419_+|head,tail	phage head-tail adaptor	head,tail	A0A1P8VVX4	Streptococcus_phage	84.2	5.4e-40
SQF63614.1|1783418_1783766_+	Uncharacterised protein	NA	A0A1P8VVS6	Streptococcus_phage	92.2	3.6e-56
SQF63615.1|1783752_1784097_+	bacteriophage pi2 protein 37	NA	A0A1P8VVU6	Streptococcus_phage	92.1	8.8e-55
SQF63616.1|1784111_1784783_+|tail	phi13 family phage major tail protein	tail	A0A1P8VVR1	Streptococcus_phage	89.9	7.6e-111
SQF63617.1|1784786_1785260_+	Uncharacterised protein	NA	A0A0A0YX24	Streptococcus_phage	90.4	9.2e-79
SQF63618.1|1785449_1788185_+|tail	phage-related minor tail protein	tail	A0A1P8VVW8	Streptococcus_phage	90.5	4.7e-244
SQF63619.1|1788181_1788904_+	phage protein	NA	A0A1P8VVR4	Streptococcus_phage	90.0	1.7e-124
SQF63620.1|1788904_1790848_+	prophage LambdaSa2, PblB	NA	A0A1P8VVT1	Streptococcus_phage	65.3	5.5e-186
SQF63621.1|1790844_1791960_+	phage associated hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.7e-123
SQF63622.1|1791974_1793756_+	gp58-like family protein	NA	Q938J9	Temperate_phage	42.8	2.0e-73
SQF63623.1|1793764_1794193_+	phage protein	NA	Q938J8	Temperate_phage	89.3	3.7e-63
SQF63624.1|1794195_1794834_+	phage protein	NA	A3F662	Streptococcus_phage	53.2	1.2e-44
SQF63625.1|1794843_1795116_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	89.9	1.6e-35
SQF63626.1|1795112_1795340_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF63627.1|1795348_1795459_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	71.4	1.0e-04
SQF63628.1|1795455_1796673_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	3.7e-164
SQF63629.1|1796837_1796999_+	phage protein	NA	A3F673	Streptococcus_phage	58.3	2.3e-05
1796951:1796976	attR	ATTTGCCCACCATTTGCCCACCAACT	NA	NA	NA	NA
SQF63630.1|1797551_1798112_+	peroxiredoxin	NA	NA	NA	NA	NA
SQF63631.1|1798132_1799665_+	NADH dehydrogenase	NA	A0A2I2L5E1	Orpheovirus	37.5	1.8e-43
