The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	38795	50035	1931144		Synechococcus_phage(28.57%)	8	NA	NA
SQF58418.1|38795_41447_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.3	1.4e-27
SQF58419.1|41607_43062_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	3.7e-54
SQF58420.1|43089_44112_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	6.9e-63
SQF58421.1|44279_44834_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF58422.1|45017_46565_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	9.8e-45
SQF58423.1|46623_47748_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF58424.1|47910_49266_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF58425.1|49543_50035_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	186764	232611	1931144	integrase,holin,tRNA,tail,terminase,protease,portal,capsid,transposase	Streptococcus_phage(55.56%)	69	188035:188052	232608:232625
SQF58554.1|186764_187898_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF58556.1|187902_188130_+	exfoliative toxin	NA	NA	NA	NA	NA
188035:188052	attL	GCTGAGGGCTATTTTTAT	NA	NA	NA	NA
SQF58557.1|188067_188931_-	membrane protein	NA	NA	NA	NA	NA
SQF58564.1|189149_190292_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.9e-86
SQF58566.1|190509_190821_+	helper of Tim protein 13	NA	NA	NA	NA	NA
SQF58568.1|190824_191364_+	biotin transporter	NA	NA	NA	NA	NA
SQF58570.1|191503_192283_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQF58572.1|192282_192798_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQF58573.1|193411_194632_-	S-layer protein	NA	NA	NA	NA	NA
SQF58575.1|195019_196162_-|integrase	integrase	integrase	A0A141E0H2	Streptococcus_phage	56.7	6.4e-118
SQF58577.1|196288_196822_-	putative lipoprotein	NA	A0A1S5SAH9	Streptococcus_phage	55.3	1.3e-20
SQF58578.1|196833_197214_-	phage protein	NA	Q938N7	Temperate_phage	64.0	1.4e-40
SQF58579.1|197223_197574_-	phage transcriptional regulator, Cro/CI family	NA	A0A1S5SFC6	Streptococcus_phage	60.3	4.8e-32
SQF58581.1|197884_198100_+	phage protein	NA	M1Q1B4	Streptococcus_phage	78.6	2.2e-24
SQF58582.1|198173_198308_+	Uncharacterised protein	NA	A3F616	Streptococcus_phage	100.0	2.1e-17
SQF58584.1|198304_199048_+	phage associated antirepressor	NA	A3F617	Streptococcus_phage	86.1	1.5e-120
SQF58586.1|199123_199336_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58589.1|199369_199561_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58591.1|199592_199748_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58593.1|199749_200292_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58595.1|200422_200683_+	Uncharacterised protein	NA	A0A1S5SAL2	Streptococcus_phage	73.3	1.1e-28
SQF58598.1|200701_200890_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58599.1|200876_202223_+	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.9	9.3e-209
SQF58601.1|202209_202812_+	Uncharacterised protein	NA	A0A1P8VVT8	Streptococcus_phage	93.0	1.7e-106
SQF58605.1|202789_203536_+	DNA replication protein, putative	NA	A0A1P8VVR3	Streptococcus_phage	96.8	2.2e-135
SQF58607.1|203536_204361_+	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	79.6	1.4e-127
SQF58609.1|204360_204588_+	phage protein	NA	C5J991	Streptococcus_phage	50.7	7.1e-13
SQF58612.1|204577_204778_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58615.1|204774_205059_+	phage protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	93.6	5.9e-41
SQF58617.1|205055_205700_+	modification methylase	NA	A0A140HLV8	Bacillus_phage	65.1	2.1e-65
SQF58619.1|205687_205843_+	DNA methylase	NA	A0A1S5SFL7	Streptococcus_phage	60.5	1.6e-08
SQF58621.1|206048_206288_+	DNA methylase	NA	A0A1X9I6Y5	Streptococcus_phage	61.5	8.0e-15
SQF58622.1|206277_206751_+	gp29	NA	A3F631	Streptococcus_phage	98.7	8.0e-91
SQF58625.1|206869_207202_+	gp24	NA	A0A1S5SCX1	Streptococcus_phage	57.4	1.2e-32
SQF58628.1|207194_207524_+	cro/CI family prophage LambdaSa2	NA	A0A1P8VVV5	Streptococcus_phage	45.5	3.2e-22
SQF58631.1|207520_207694_+	Uncharacterised protein	NA	A0A1J0MGB9	Staphylococcus_phage	46.9	1.1e-05
SQF58632.1|207696_207945_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58637.1|207941_208121_+	Uncharacterised protein	NA	A0A060QN65	Streptococcus_phage	55.3	1.1e-05
SQF58639.1|208129_208279_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58642.1|208247_208448_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58644.1|208471_208891_+	RNA polymerase ECF family sigma factor	NA	A0A1S5SF97	Streptococcus_phage	42.0	1.1e-19
SQF58650.1|208982_209549_+|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	integrase	A0A1S5SCL7	Streptococcus_phage	61.0	1.2e-61
SQF58652.1|209720_210014_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58654.1|210010_210340_+	HNH endonuclease	NA	A0A1S7FZ53	Listeria_phage	49.5	6.7e-20
SQF58656.1|210461_210809_+	Uncharacterised protein	NA	E2ELI1	Clostridium_phage	34.5	4.0e-07
SQF58659.1|210789_212448_+|terminase	putative phage terminase, large subunit	terminase	E2ELI2	Clostridium_phage	44.4	4.0e-129
SQF58661.1|212646_213882_+|portal	HK97 family phage portal protein	portal	A0A1S7FYX7	Listeria_phage	37.6	3.6e-74
SQF58663.1|213885_214602_+|protease	Prophage Clp protease-like protein	protease	D2XR17	Bacillus_phage	42.9	1.4e-38
SQF58669.1|214637_215831_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1B1P752	Bacillus_phage	30.8	1.7e-41
SQF58672.1|215845_216133_+	HeH/LEM domain	NA	NA	NA	NA	NA
SQF58673.1|216152_216446_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58675.1|216447_216825_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58677.1|216796_217168_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58679.1|217176_217599_+	Uncharacterised protein	NA	A0A1S7FZ20	Listeria_phage	48.5	3.1e-25
SQF58681.1|217609_218197_+	Uncharacterised protein	NA	A0A1B1P778	Bacillus_phage	36.4	1.1e-28
SQF58683.1|218217_218589_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58685.1|218624_218783_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58687.1|218856_222258_+|tail	tail protein	tail	J7KDT4	Streptococcus_phage	58.8	9.5e-93
SQF58689.1|222257_222965_+	phage protein	NA	A0A1B1P761	Bacillus_phage	35.2	1.3e-28
SQF58690.1|222961_225010_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	44.0	2.2e-121
SQF58692.1|225009_226026_+	phage hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	86.7	1.2e-157
SQF58694.1|226041_228057_+	Phage infection protein	NA	Q938J9	Temperate_phage	74.1	3.6e-180
SQF58696.1|228068_228500_+	phage protein	NA	Q938J8	Temperate_phage	99.3	4.0e-73
SQF58699.1|228502_229120_+	phage protein	NA	Q938J7	Temperate_phage	89.8	8.3e-80
SQF58701.1|229129_229585_+|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	80.8	8.9e-63
SQF58704.1|229586_229700_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	91.4	2.6e-08
SQF58706.1|229696_230902_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.5	3.1e-208
SQF58708.1|231017_232190_-	DNA/RNA non-specific endonuclease family protein	NA	A7J2B8	Streptococcus_phage	49.5	1.4e-75
SQF58710.1|232428_232611_+	phage protein	NA	A3F673	Streptococcus_phage	80.0	1.1e-19
232608:232625	attR	ATAAAAATAGCCCTCAGC	NA	NA	NA	NA
>prophage 3
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	375898	431104	1931144	bacteriocin,protease,tRNA,transposase	Streptococcus_phage(33.33%)	59	NA	NA
SQF59095.1|375898_376489_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.7	2.6e-54
SQF59096.1|376983_377259_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF59097.1|377507_378143_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SQF59098.1|378160_379036_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	4.1e-72
SQF59099.1|379054_379294_+	Tpl protein	NA	NA	NA	NA	NA
SQF59100.1|379697_380021_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF59101.1|380025_380889_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQF59102.1|380915_381308_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF59103.1|381354_381984_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF59104.1|382281_382638_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.8	1.1e-39
SQF59105.1|382711_383539_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	3.2e-127
SQF59106.1|383772_384954_+	L-lactate oxidase	NA	NA	NA	NA	NA
SQF59107.1|385219_390163_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQF59108.1|390935_391643_+	permease	NA	NA	NA	NA	NA
SQF59109.1|391885_393883_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.2	6.0e-87
SQF59110.1|394376_395390_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.0	1.6e-96
SQF59111.1|395393_395882_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF59112.1|395848_398029_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	7.3e-171
SQF59113.1|398231_398984_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF59114.1|399441_399792_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF59115.1|400206_400458_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF59116.1|400551_400824_-	phage protein	NA	NA	NA	NA	NA
SQF59117.1|400820_401075_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59118.1|401436_401673_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF59119.1|401665_402364_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.6	7.1e-11
SQF59120.1|402439_403399_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF59121.1|403731_405069_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF59122.1|405242_406625_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	6.5e-32
SQF59123.1|406658_407213_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF59124.1|407212_407464_+	membrane protein	NA	NA	NA	NA	NA
SQF59125.1|407483_408179_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF59126.1|408329_408671_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59130.1|408769_409417_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF59132.1|409562_410495_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF59134.1|410558_411284_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF59136.1|411284_412139_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF59138.1|412285_413092_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF59140.1|413308_415714_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	2.2e-88
SQF59142.1|415783_416137_-	integral membrane protein	NA	NA	NA	NA	NA
SQF59144.1|416380_416806_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF59146.1|416911_417601_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF59148.1|417922_418651_+	uridylate kinase	NA	NA	NA	NA	NA
SQF59149.1|418679_419237_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF59151.1|419345_420203_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF59153.1|420275_420785_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF59155.1|420781_420997_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF59157.1|421152_422334_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQF59159.1|422648_424421_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF59160.1|424579_425632_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF59162.1|425677_426253_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF59163.1|426411_426909_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF59165.1|426889_427297_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF59166.1|427416_428313_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF59168.1|428333_428810_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF59170.1|429116_429371_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59178.1|429768_429903_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF59180.1|430015_430198_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF59182.1|430535_430685_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF59184.1|430681_431104_-|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
>prophage 4
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	488483	494885	1931144	portal	Streptococcus_phage(66.67%)	12	NA	NA
SQF59296.1|488483_488693_-	vanUG2	NA	A0A2K5B263	Erysipelothrix_phage	61.5	1.3e-16
SQF59297.1|488682_490341_-	ATPase	NA	NA	NA	NA	NA
SQF59299.1|490331_490556_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59301.1|490555_491197_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59303.1|491239_491398_+	prophage LambdaSa04	NA	M1PSF2	Streptococcus_phage	86.5	3.9e-18
SQF59305.1|491452_491755_+	Plasmid stabilization system antitoxin protein	NA	NA	NA	NA	NA
SQF59307.1|491754_492060_+	prophage LambdaSa04, RelE/ParE family protein	NA	NA	NA	NA	NA
SQF59309.1|492078_492351_+	cytoplasmic protein	NA	E4ZFM1	Streptococcus_phage	47.9	2.7e-06
SQF59311.1|492455_492908_+|portal	portal protein	portal	E4ZFM3	Streptococcus_phage	85.6	1.3e-61
SQF59312.1|492973_493282_+	prophage minor structural protein	NA	Q6DMT0	Streptococcus_phage	64.9	5.7e-21
SQF59314.1|493698_494037_+	huntington interacting protein HYPE	NA	NA	NA	NA	NA
SQF59317.1|494192_494885_+	asparagine ligase A	NA	M1PB22	Moumouvirus	34.1	4.4e-21
>prophage 5
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	563960	618132	1931144	bacteriocin,protease,transposase,tRNA	Streptococcus_phage(46.15%)	47	NA	NA
SQF59448.1|563960_566456_+	helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	48.3	1.1e-202
SQF59450.1|566392_567373_-|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.7e-32
SQF59452.1|567882_569076_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQF59454.1|569096_570443_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF59456.1|570856_571747_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF59458.1|571743_572721_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQF59461.1|572717_573629_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.7e-105
SQF59463.1|573761_575159_+	dipeptidase	NA	NA	NA	NA	NA
SQF59465.1|575310_576858_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF59467.1|577007_577730_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF59470.1|577749_578949_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF59472.1|579045_579306_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF59474.1|579420_580362_-	DHH family protein	NA	NA	NA	NA	NA
SQF59476.1|580755_581205_+	flavodoxin	NA	NA	NA	NA	NA
SQF59478.1|581379_581664_+	chorismate mutase	NA	NA	NA	NA	NA
SQF59480.1|581656_582919_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	3.2e-94
SQF59482.1|583033_583381_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF59484.1|584396_584966_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF59486.1|584966_586919_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQF59489.1|587286_589011_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF59491.1|589142_589601_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	2.3e-18
SQF59492.1|589827_591135_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF59495.1|591905_592067_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF59503.1|592288_593239_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF59505.1|593235_594294_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF59507.1|594313_595672_+|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF59579.1|595646_596318_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF59581.1|596314_596998_+	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF59583.1|597020_597944_+	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.4	5.1e-33
SQF59585.1|597952_599080_+	ABC transporter	NA	NA	NA	NA	NA
SQF59587.1|599076_600195_+	ABC transporter	NA	NA	NA	NA	NA
SQF59589.1|600766_603499_+	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF59591.1|604470_606429_+	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	9.9e-103
SQF59592.1|606442_607465_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF59594.1|607856_608054_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF59596.1|608088_608805_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF59598.1|608822_609317_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF59600.1|609316_609853_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF59602.1|609868_611377_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF59604.1|611392_612268_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF59606.1|612429_613836_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF59608.1|613848_614265_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF59610.1|614530_614788_+	membrane protein	NA	NA	NA	NA	NA
SQF59612.1|614852_616124_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF59614.1|616127_616316_+	epuA protein	NA	NA	NA	NA	NA
SQF59616.1|616351_616891_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF59618.1|616998_618132_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	657559	728922	1931144	head,protease,transposase,tRNA	Streptococcus_phage(19.23%)	66	NA	NA
SQF59694.1|657559_659770_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.2	1.3e-268
SQF59696.1|659877_661041_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF59700.1|661037_661724_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF59702.1|661817_662984_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF59704.1|663044_663386_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	5.0e-18
SQF59706.1|663606_664959_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
SQF59708.1|665046_666315_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF59710.1|666344_666785_-	membrane protein	NA	NA	NA	NA	NA
SQF59714.1|667019_668162_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
SQF59716.1|668173_669388_+	thiamine biosynthesis protein thiI	NA	NA	NA	NA	NA
SQF59719.1|669425_670718_+	metallophosphatase	NA	A0A2H4JC87	uncultured_Caudovirales_phage	30.8	2.9e-34
SQF59722.1|670841_671825_+|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.7e-32
SQF59725.1|672016_672331_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
SQF59727.1|672342_672669_+	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
SQF59729.1|672696_672990_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
SQF59732.1|673135_673246_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59734.1|673347_674262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF59736.1|674258_674717_+	signal peptidase II	NA	NA	NA	NA	NA
SQF59738.1|674706_675597_+	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	3.6e-07
SQF59745.1|675992_676514_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQF59747.1|676529_677789_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.2	2.7e-61
SQF59750.1|677798_678785_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.2e-25
SQF59752.1|678828_679911_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
SQF59753.1|680173_683350_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SQF59757.1|683556_684828_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SQF59761.1|684827_685538_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	1.7e-36
SQF59763.1|685549_686770_+	permease family protein	NA	NA	NA	NA	NA
SQF59765.1|687023_688757_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
SQF59768.1|688883_689156_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQF59770.1|689165_689405_+	RNA binding protein	NA	NA	NA	NA	NA
SQF59772.1|690337_693364_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQF59774.1|693383_693785_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
SQF59776.1|693964_694840_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF59778.1|694975_695497_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SQF59779.1|695711_696230_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SQF59781.1|696219_696951_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF59783.1|696950_697943_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF59785.1|698120_699179_+	regulatory protein	NA	NA	NA	NA	NA
SQF59787.1|699191_700115_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF59789.1|700415_701084_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	2.2e-17
SQF59793.1|701080_701992_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF59795.1|701988_703935_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF59797.1|704033_704627_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	2.7e-11
SQF59799.1|704778_705486_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	6.5e-12
SQF59802.1|705542_705761_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
SQF59820.1|706442_707468_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF59822.1|707971_708148_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF59824.1|708375_708756_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF59826.1|708755_709604_+	degV family protein	NA	NA	NA	NA	NA
SQF59828.1|709728_710937_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
SQF59830.1|710933_712811_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.1	1.3e-62
SQF59832.1|713702_714113_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF59833.1|714194_716207_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF59835.1|716426_717077_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF59838.1|717079_717748_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF59840.1|717756_718989_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF59842.1|719292_720171_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF59844.1|720152_721097_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF59847.1|721089_722103_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF59849.1|722089_723079_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF59852.1|723308_724586_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF59854.1|724572_725748_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF59856.1|725956_726796_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	1.9e-82
SQF59858.1|726875_727373_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	33.6	1.9e-10
SQF59860.1|727392_727563_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF59861.1|727692_728922_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.2	3.9e-137
>prophage 7
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	759944	815283	1931144	head,integrase,tRNA,tail,terminase,capsid	Streptococcus_phage(46.3%)	68	774247:774297	816381:816431
SQF59917.1|759944_760844_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF59918.1|760916_762155_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQF59920.1|762147_762783_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SQF59922.1|762797_763727_+	ribonuclease Z	NA	NA	NA	NA	NA
SQF59924.1|763726_764491_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SQF59927.1|764487_766698_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.0	1.1e-70
SQF59929.1|766847_767366_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.9	1.7e-30
SQF59931.1|767446_768130_+	DNA replication protein DnaD	NA	Q938N2	Temperate_phage	36.8	2.9e-09
SQF59933.1|768126_768783_+	endonuclease III	NA	NA	NA	NA	NA
SQF59935.1|768854_769541_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQF59937.1|769530_770319_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF59939.1|770358_771465_+	FAD dependent oxidoreductase family protein	NA	NA	NA	NA	NA
SQF59941.1|771522_772392_+	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	3.2e-101
SQF59945.1|772391_772985_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	29.5	1.3e-08
SQF59947.1|773228_774269_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
774247:774297	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAACG	NA	NA	NA	NA
SQF59948.1|774351_775491_-|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.1	1.3e-118
SQF59950.1|775610_776468_-	Site-specific DNA methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	29.7	8.1e-17
SQF59952.1|776506_778171_-	prophage Lp2 protein 4	NA	NA	NA	NA	NA
SQF59954.1|778172_778556_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	76.0	1.2e-52
SQF59956.1|778539_778881_-	phage repressor protein	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
SQF59958.1|779078_779291_+	phage family protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
SQF59961.1|779318_780038_+	phage antirepressor family protein	NA	M1Q1T4	Streptococcus_phage	70.7	1.5e-88
SQF59963.1|780041_780392_+	phage protein	NA	NA	NA	NA	NA
SQF59964.1|780366_780681_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59966.1|781095_781407_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF59968.1|781408_781579_+	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQF59970.1|781571_781775_+	phage protein	NA	NA	NA	NA	NA
SQF59972.1|781814_782159_+	phage protein	NA	A7J274	Streptococcus_phage	88.6	4.5e-51
SQF59974.1|782155_782305_+	phage protein	NA	A7J275	Streptococcus_phage	90.0	2.2e-15
SQF59975.1|782301_782505_+	phage protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
SQF59977.1|782592_782892_+	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQF59979.1|782891_784049_+	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQF59981.1|784063_784621_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF59983.1|784663_786586_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQF59985.1|786590_788975_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	97.6	2.8e-285
SQF59987.1|789340_789616_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQF59989.1|789612_790935_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	3.0e-252
SQF59991.1|790935_791106_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQF59993.1|791098_791371_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF59995.1|791373_791520_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF59996.1|791503_791920_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF59998.1|792039_792735_+	phage protein	NA	A0A2H4J4R0	uncultured_Caudovirales_phage	34.5	3.4e-29
SQF60000.1|792736_794023_+|terminase	phage terminase	terminase	A0A1S5SA45	Streptococcus_phage	85.0	5.9e-221
SQF60002.1|794036_795539_+|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	99.4	3.8e-280
SQF60004.1|795543_797022_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.6	9.0e-274
SQF60006.1|796993_797233_+	phage protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
SQF60008.1|797294_797561_+	putative phage associated protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
SQF60009.1|797692_798301_+	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
SQF60011.1|798304_799123_+|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
SQF60013.1|799176_799593_+	phage protein	NA	Q938K7	Temperate_phage	99.1	4.3e-56
SQF60015.1|799555_799915_+|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
SQF60016.1|799914_800271_+	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
SQF60018.1|800267_800666_+|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	99.2	1.3e-70
SQF60020.1|800665_801127_+|tail	tail shaft protein	tail	Q938K6	Temperate_phage	78.8	1.4e-60
SQF60021.1|801170_801605_+	phage protein	NA	Q938K5	Temperate_phage	98.6	5.5e-70
SQF60023.1|801608_802190_+	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	98.4	1.6e-104
SQF60026.1|802179_805440_+	phage protein	NA	Q938K3	Temperate_phage	99.3	0.0e+00
SQF60036.1|805436_806153_+	phage protein	NA	Q938K2	Temperate_phage	99.2	1.2e-135
SQF60038.1|806149_808297_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	93.2	0.0e+00
SQF60040.1|808296_809415_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	78.3	1.5e-135
SQF60042.1|809429_811316_+	gp58-like family protein	NA	Q938J9	Temperate_phage	84.4	1.9e-215
SQF60044.1|811327_811759_+	phage protein	NA	Q938J8	Temperate_phage	96.5	1.4e-70
SQF60045.1|811761_812373_+	phage protein	NA	Q938J7	Temperate_phage	92.6	1.0e-82
SQF60046.1|812384_812657_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF60048.1|812653_812881_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF60050.1|812889_812997_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	88.2	3.3e-05
SQF60052.1|812997_814332_+	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	93.2	5.9e-248
SQF60054.1|814503_815283_+	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.3	4.6e-27
816381:816431	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAACG	NA	NA	NA	NA
>prophage 8
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	1017924	1135450	1931144	integrase,tRNA,tail,terminase,portal,protease,transposase	Streptococcus_phage(46.58%)	133	1089135:1089151	1136967:1136983
SQF60431.1|1017924_1018809_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQF60432.1|1018924_1020265_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA	NA
SQF60433.1|1020361_1021318_-	membrane protein	NA	NA	NA	NA	NA
SQF60435.1|1021328_1021925_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA	NA
SQF60436.1|1022016_1024653_-	permease family protein	NA	NA	NA	NA	NA
SQF60438.1|1024667_1025369_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
SQF60440.1|1025486_1026029_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA	NA
SQF60442.1|1026171_1026813_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA	NA
SQF60444.1|1026975_1027464_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
SQF60446.1|1027474_1027675_-	csbD-like family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
SQF60448.1|1027715_1028255_-	response regulator	NA	NA	NA	NA	NA
SQF60450.1|1028267_1028456_-	membrane protein	NA	NA	NA	NA	NA
SQF60451.1|1028466_1029054_-	membrane protein	NA	NA	NA	NA	NA
SQF60453.1|1029114_1029363_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQF60456.1|1029724_1032043_-	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.1e-131
SQF60458.1|1032154_1033165_-|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.1e-32
SQF60460.1|1033657_1034980_+	amino acid symporter	NA	NA	NA	NA	NA
SQF60462.1|1035099_1036335_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF60464.1|1036704_1037478_-	protein B	NA	NA	NA	NA	NA
SQF60466.1|1037847_1038684_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQF60468.1|1038699_1039329_-	histidine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	1.7e-27
SQF60470.1|1039338_1039980_-	histidine transporter permease	NA	NA	NA	NA	NA
SQF60476.1|1040086_1040422_-	phosphonoacetate hydrolase	NA	NA	NA	NA	NA
SQF60478.1|1040617_1042432_-	glucosamine-fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
SQF60480.1|1042607_1043165_-	signal peptidase I	NA	NA	NA	NA	NA
SQF60482.1|1043382_1044885_-	pyruvate kinase	NA	NA	NA	NA	NA
SQF60484.1|1044947_1045961_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQF60486.1|1046040_1049151_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
SQF60488.1|1049335_1049707_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF60490.1|1049706_1050405_+	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQF60492.1|1050414_1051200_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF60493.1|1051330_1051945_-	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
SQF60495.1|1052535_1052724_-	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
SQF60497.1|1052838_1053627_-	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	9.1e-47
SQF60498.1|1053908_1054622_-	mitogen	NA	Q938J1	Temperate_phage	59.5	9.0e-78
SQF60501.1|1054925_1055792_-	phage protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
SQF60503.1|1055779_1056304_-	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF60504.1|1056443_1057640_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q938J4	Temperate_phage	84.2	1.8e-200
SQF60506.1|1057636_1057747_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF60509.1|1057750_1057936_-	phage protein	NA	Q938J5	Temperate_phage	96.7	1.1e-24
SQF60510.1|1057932_1058232_-	phage protein	NA	Q938J6	Temperate_phage	79.2	6.7e-35
SQF60512.1|1058242_1058860_-	phage protein	NA	Q938J7	Temperate_phage	90.7	1.5e-81
SQF60514.1|1058862_1059294_-	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF60516.1|1059305_1061342_-	Phage infection protein	NA	Q938J9	Temperate_phage	71.4	9.1e-184
SQF60518.1|1061351_1062359_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	62.3	7.6e-107
SQF60520.1|1062355_1064500_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	90.9	0.0e+00
SQF60522.1|1064496_1065204_-	phage protein	NA	Q938K2	Temperate_phage	69.8	1.1e-91
SQF60524.1|1065203_1069127_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.6	5.0e-239
SQF60526.1|1069336_1069663_-	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQF60529.1|1069715_1070324_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQF60531.1|1070339_1070765_-	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQF60533.1|1070761_1071139_-	phage protein	NA	J7KDM3	Streptococcus_phage	76.0	1.5e-47
SQF60534.1|1071135_1071483_-	phage protein	NA	J7KJ42	Streptococcus_phage	80.9	2.6e-46
SQF60537.1|1071479_1071782_-	phage protein	NA	J7KC36	Streptococcus_phage	88.8	3.0e-43
SQF60539.1|1071926_1073111_-	phage protein	NA	J7KJ82	Streptococcus_phage	76.6	1.5e-162
SQF60541.1|1073135_1073801_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	77.7	1.9e-90
SQF60543.1|1073778_1074999_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	5.8e-186
SQF60545.1|1075032_1075257_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF60546.1|1075249_1075420_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF60548.1|1075416_1077171_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
SQF60550.1|1077185_1077653_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF60552.1|1077821_1078163_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	89.8	9.6e-54
SQF60555.1|1078159_1078300_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60556.1|1078398_1078584_+	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQF60558.1|1078635_1079013_+	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQF60560.1|1079150_1079612_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60562.1|1079630_1080545_-	phage protein	NA	NA	NA	NA	NA
SQF60564.1|1081465_1081906_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF60567.1|1082178_1082814_-	phage protein	NA	L0P368	Streptococcus_phage	68.4	2.5e-87
SQF60569.1|1082813_1083215_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60571.1|1083312_1083540_-	phage protein	NA	A3F630	Streptococcus_phage	76.0	1.9e-26
SQF60572.1|1083543_1084029_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	4.6e-94
SQF60574.1|1084032_1084317_-	phage protein	NA	A3F628	Streptococcus_phage	91.5	8.6e-40
SQF60576.1|1084313_1084727_-	phage protein	NA	Q938M1	Temperate_phage	63.8	2.4e-35
SQF60578.1|1084723_1085008_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQF60580.1|1085001_1085253_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	98.8	1.6e-42
SQF60582.1|1085249_1085606_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	96.6	4.6e-59
SQF60584.1|1085589_1085910_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	5.5e-51
SQF60585.1|1085944_1086319_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.7	8.2e-14
SQF60587.1|1086569_1088045_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	87.1	2.0e-249
SQF60589.1|1088034_1088838_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.5e-150
SQF60591.1|1088849_1089308_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	100.0	3.8e-82
1089135:1089151	attL	AATAATGTTATTTTGAA	NA	NA	NA	NA
SQF60593.1|1089323_1090553_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.8	1.3e-236
SQF60594.1|1090654_1091335_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF60596.1|1091335_1091818_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	98.8	7.9e-78
SQF60598.1|1092046_1092361_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	1.2e-50
SQF60600.1|1092376_1092514_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	5.4e-16
SQF60601.1|1092510_1092807_-	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	99.0	1.4e-48
SQF60604.1|1092885_1093071_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF60605.1|1093237_1093477_+	phage protein	NA	NA	NA	NA	NA
SQF60607.1|1093626_1093836_+	phage protein	NA	NA	NA	NA	NA
SQF60609.1|1093794_1094040_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF60611.1|1094051_1094291_-	Cro/CI family phage transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	97.5	3.1e-35
SQF60613.1|1094364_1094847_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60615.1|1094843_1094990_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60617.1|1095164_1095953_+	Phage transcriptional repressor	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
SQF60618.1|1095962_1096268_+	phage membrane protein	NA	NA	NA	NA	NA
SQF60619.1|1096387_1097476_+|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
SQF60621.1|1097749_1098370_+	phage protein	NA	NA	NA	NA	NA
SQF60622.1|1098626_1100891_-	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF60624.1|1100925_1102419_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF60627.1|1102533_1103553_-	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
SQF60629.1|1103797_1105045_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF60630.1|1105318_1106680_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF60632.1|1106679_1107516_+	maltose transport system permease	NA	NA	NA	NA	NA
SQF60634.1|1107889_1108477_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	3.5e-27
SQF60636.1|1108990_1109974_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF60638.1|1110004_1111255_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF60640.1|1111247_1111487_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF60642.1|1111504_1112761_-	Protein dltB	NA	NA	NA	NA	NA
SQF60644.1|1112757_1114296_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	5.0e-41
SQF60646.1|1114307_1114451_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF60648.1|1114714_1116706_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQF60650.1|1116898_1119073_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQF60652.1|1119072_1119813_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.5e-35
SQF60654.1|1119960_1120083_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60656.1|1120107_1121487_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF60657.1|1121677_1122112_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQF60659.1|1122108_1122444_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF60662.1|1122446_1122758_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQF60664.1|1122780_1124775_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF60666.1|1124880_1125975_-	outer surface protein	NA	NA	NA	NA	NA
SQF60669.1|1125983_1127384_-	beta-glucosidase	NA	NA	NA	NA	NA
SQF60671.1|1127608_1128304_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQF60673.1|1128308_1128467_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF60675.1|1128535_1129849_-	GTPase ObgE	NA	NA	NA	NA	NA
SQF60677.1|1129905_1130034_-	membrane protein	NA	NA	NA	NA	NA
SQF60679.1|1130275_1130791_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF60681.1|1130811_1131618_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.0	1.1e-63
SQF60686.1|1131917_1132790_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF60688.1|1133013_1134324_+	membrane protein	NA	NA	NA	NA	NA
SQF60690.1|1134401_1134695_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF60692.1|1134727_1135450_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	40.1	1.9e-38
1136967:1136983	attR	TTCAAAATAACATTATT	NA	NA	NA	NA
>prophage 9
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	1174004	1255263	1931144	head,integrase,holin,tRNA,tail,terminase,protease,transposase	Streptococcus_phage(62.71%)	98	1216355:1216374	1252648:1252667
SQF60753.1|1174004_1174298_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF60755.1|1174330_1175053_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	40.1	1.9e-38
SQF60757.1|1175256_1175952_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF60759.1|1175970_1176732_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF60760.1|1176728_1176944_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF60762.1|1176984_1177119_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60763.1|1177304_1179923_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	1.8e-62
SQF60765.1|1180309_1181365_-	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF60767.1|1181427_1182099_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	1.9e-08
SQF60769.1|1182200_1183397_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF60771.1|1183772_1185578_-	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF60772.1|1185590_1186553_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF60774.1|1186847_1187564_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF60776.1|1187682_1188387_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF60778.1|1188588_1189617_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF60780.1|1189656_1190844_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF60783.1|1190957_1191548_-	S11 family peptidase	NA	NA	NA	NA	NA
SQF60785.1|1191772_1192006_-	beta-lactamase	NA	NA	NA	NA	NA
SQF60786.1|1192172_1192778_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
SQF60789.1|1192874_1193915_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF60791.1|1193985_1196229_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	58.7	9.8e-54
SQF60793.1|1196209_1196872_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF60795.1|1197070_1197811_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF60797.1|1197850_1198705_+	methyltransferase	NA	NA	NA	NA	NA
SQF60799.1|1198694_1198973_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQF60800.1|1198996_1200997_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	6.4e-65
SQF60802.1|1201123_1202743_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF60804.1|1203049_1204594_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.3	9.8e-37
SQF60806.1|1204841_1205537_-	integral membrane family protein	NA	NA	NA	NA	NA
SQF60808.1|1205640_1207008_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SQF60810.1|1207206_1208253_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF60811.1|1208353_1208950_-	recombination protein	NA	NA	NA	NA	NA
SQF60813.1|1209746_1210526_-	formate transporter	NA	NA	NA	NA	NA
SQF60815.1|1210649_1211192_-	membrane protein	NA	NA	NA	NA	NA
SQF60817.1|1211352_1211874_-	3H domain-containing protein	NA	NA	NA	NA	NA
SQF60819.1|1211980_1212676_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF60820.1|1212914_1213850_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
SQF60822.1|1214149_1216012_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.0	1.1e-90
1216355:1216374	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF60824.1|1216543_1216726_-	paratox	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
SQF60826.1|1216964_1217765_+	streptodornase	NA	NA	NA	NA	NA
SQF60828.1|1218035_1218470_+	phage membrane protein	NA	NA	NA	NA	NA
SQF60829.1|1218539_1219748_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.6	4.1e-208
SQF60832.1|1219863_1220091_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF60833.1|1220087_1220363_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF60835.1|1220372_1220990_-	phage protein	NA	Q938J7	Temperate_phage	88.3	1.1e-76
SQF60837.1|1220992_1221424_-	phage protein	NA	Q938J8	Temperate_phage	95.8	3.9e-68
SQF60839.1|1221435_1223220_-	phage minor structural, region domain-containing protein	NA	Q938J9	Temperate_phage	47.3	4.1e-95
SQF60840.1|1223234_1224236_-	hyaluronidase	NA	Q938K0	Temperate_phage	71.6	2.3e-127
SQF60842.1|1224235_1226194_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	49.2	5.3e-96
SQF60844.1|1226190_1226886_-	phage protein	NA	A0A1B1P761	Bacillus_phage	29.6	7.6e-05
SQF60846.1|1226882_1229240_-	phage protein	NA	M1NRG5	Streptococcus_phage	50.6	6.5e-141
SQF60847.1|1229239_1229890_-	phage protein	NA	M1PL84	Streptococcus_phage	62.4	6.6e-35
SQF60849.1|1229900_1230494_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	2.7e-59
SQF60851.1|1230505_1230841_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF60853.1|1230841_1231078_-	phage protein	NA	A0A0B5A7G2	Streptococcus_phage	71.4	2.5e-21
SQF60856.1|1231070_1231409_-	phage protein	NA	M1PFF8	Streptococcus_phage	70.3	2.2e-42
SQF60858.1|1231368_1231791_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	70.8	3.7e-47
SQF60860.1|1231800_1232001_-	phage protein	NA	NA	NA	NA	NA
SQF60862.1|1232000_1232546_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	62.0	1.4e-54
SQF60864.1|1232511_1232913_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	73.6	5.2e-51
SQF60865.1|1232937_1233399_-	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQF60867.1|1233479_1234895_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.2	2.9e-213
SQF60869.1|1235004_1235271_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	86.4	7.3e-33
SQF60871.1|1235263_1235443_-	phage protein	NA	NA	NA	NA	NA
SQF60873.1|1235492_1235717_-	phage protein	NA	NA	NA	NA	NA
SQF60875.1|1235722_1237216_-	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQF60877.1|1237208_1238477_-	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQF60878.1|1238473_1238830_-	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF60880.1|1239431_1239851_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	8.7e-57
SQF60882.1|1240118_1240754_-	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
SQF60884.1|1240755_1241025_-	phage protein	NA	A7J287	Streptococcus_phage	71.9	9.6e-25
SQF60886.1|1241108_1241621_-	phage protein	NA	Q708P9	Streptococcus_phage	78.0	2.3e-67
SQF60888.1|1241617_1241959_-	phage protein	NA	M1NS23	Streptococcus_phage	38.7	1.1e-12
SQF60890.1|1242136_1242304_-	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	51.9	3.3e-07
SQF60892.1|1242313_1243111_-	phage protein	NA	J7KGZ1	Streptococcus_phage	84.5	6.0e-131
SQF60893.1|1243107_1244037_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	72.2	1.1e-91
SQF60895.1|1244039_1244369_-	phage protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
SQF60900.1|1244424_1244631_-	phage protein	NA	NA	NA	NA	NA
SQF60902.1|1244639_1244780_-	phage protein	NA	NA	NA	NA	NA
SQF60903.1|1244776_1245010_-	phage protein	NA	Q938N1	Temperate_phage	94.8	6.1e-36
SQF60906.1|1244990_1245380_-	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	81.4	9.3e-45
SQF60908.1|1245863_1246049_-	phage protein	NA	Q938N3	Temperate_phage	88.5	5.8e-21
SQF60910.1|1246050_1246362_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.4	4.1e-43
SQF60911.1|1246439_1246625_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF60913.1|1246791_1247031_+	phage protein	NA	NA	NA	NA	NA
SQF60915.1|1247172_1247979_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF60917.1|1247913_1248180_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF60919.1|1248211_1248928_-	phage antirepressor KilAC domain-containing protein	NA	C9WB91	Streptococcus_virus	87.3	5.8e-117
SQF60920.1|1248939_1249131_-	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQF60922.1|1249437_1249587_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF60924.1|1250284_1250632_+	Cro/CI family phage transcriptional regulator	NA	A0A1S5SEQ8	Streptococcus_phage	71.8	3.6e-40
SQF60925.1|1250635_1251016_+	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQF60927.1|1251027_1251294_+	phage protein	NA	NA	NA	NA	NA
SQF60929.1|1251417_1252560_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF60931.1|1252649_1252925_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1252648:1252667	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF60938.1|1253023_1253611_-	membrane protein	NA	NA	NA	NA	NA
SQF60940.1|1253588_1254449_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF60942.1|1254423_1255263_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 10
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	1260625	1268430	1931144	transposase	Klosneuvirus(16.67%)	6	NA	NA
SQF60954.1|1260625_1261966_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.9	8.2e-40
SQF60955.1|1262118_1262973_-	tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.0e-39
SQF60957.1|1263180_1264875_-	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	42.2	4.5e-128
SQF60959.1|1265130_1266129_+|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.7e-32
SQF60961.1|1266138_1267548_-	deoxyribodipyrimidine photolyase	NA	A0A1V0SGL1	Hokovirus	32.6	4.4e-60
SQF60962.1|1267695_1268430_-	arginine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	6.3e-34
>prophage 11
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	1527750	1594827	1931144	head,tail,terminase,portal,transposase	Streptococcus_phage(41.67%)	86	NA	NA
SQF61497.1|1527750_1528734_-|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.1e-32
SQF61498.1|1528876_1529830_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF61499.1|1529924_1530809_-	Fructokinase	NA	NA	NA	NA	NA
SQF61500.1|1531072_1534072_-	endo-beta-N-acetylglucosaminidase F2	NA	NA	NA	NA	NA
SQF61501.1|1534302_1536186_-	PTS system sucrose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF61502.1|1536427_1537867_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
SQF61503.1|1537871_1538837_+	sucrose operon repressor	NA	C6ZCU4	Enterobacteria_phage	27.7	8.0e-21
SQF61504.1|1538977_1539430_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
SQF61505.1|1539422_1539812_-	Gls24 family general stress protein	NA	NA	NA	NA	NA
SQF61506.1|1539857_1540415_-	elongation factor P	NA	NA	NA	NA	NA
SQF61507.1|1540510_1540972_-	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	55.1	1.1e-33
SQF61508.1|1541006_1542080_-	Xaa-Pro dipeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	32.2	3.0e-16
SQF61509.1|1542195_1545024_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.6	1.4e-304
SQF61510.1|1545250_1545433_-	paratox	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
SQF61511.1|1545670_1546471_+	streptodornase	NA	NA	NA	NA	NA
SQF61512.1|1546740_1547175_+	phage membrane protein	NA	NA	NA	NA	NA
SQF61513.1|1547244_1548453_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.8	2.6e-210
SQF61514.1|1548449_1548560_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF61515.1|1548568_1548796_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQF61516.1|1548792_1549065_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF61517.1|1549076_1549709_-	phage protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
SQF61518.1|1549711_1550140_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF61519.1|1550151_1552056_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF61520.1|1552065_1553073_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	63.2	1.3e-109
SQF61521.1|1553069_1555121_-	phage protein	NA	A3F656	Streptococcus_phage	85.2	0.0e+00
SQF61522.1|1555117_1555897_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
SQF61523.1|1555928_1559564_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	44.4	3.0e-04
SQF61524.1|1559578_1559908_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQF61525.1|1559949_1560309_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQF61526.1|1560361_1561009_-|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	2.7e-41
SQF61527.1|1561018_1561408_-	phage protein	NA	B5SP36	Lactococcus_phage	67.4	9.3e-45
SQF61528.1|1561404_1561770_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
SQF61529.1|1561750_1562059_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	41.2	3.3e-13
SQF61530.1|1562055_1562409_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF61531.1|1562422_1562665_-	phage protein	NA	NA	NA	NA	NA
SQF61532.1|1562674_1563757_-	phage protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	57.4	9.1e-106
SQF61533.1|1563759_1564140_-	phage protein	NA	A0A0K2CNR0	Brevibacillus_phage	32.5	2.4e-05
SQF61534.1|1564149_1564683_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	84.2	4.7e-15
SQF61535.1|1564794_1565538_-	antirepressor	NA	M1PKL6	Streptococcus_phage	56.9	5.3e-73
SQF61536.1|1565539_1565788_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61537.1|1565902_1566082_-	Uncharacterised protein	NA	M1NRK8	Streptococcus_phage	79.7	2.6e-18
SQF61538.1|1566177_1566447_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	2.3e-34
SQF61539.1|1566506_1566686_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61540.1|1566676_1568302_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	44.2	1.7e-47
SQF61541.1|1568282_1569785_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.3	6.0e-140
SQF61542.1|1569796_1571086_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.7e-183
SQF61543.1|1571063_1571546_-|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
SQF61544.1|1572020_1572461_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF61545.1|1572734_1572905_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	98.2	1.1e-26
SQF61546.1|1572901_1573633_-	phage protein	NA	A0A2H4JBN7	uncultured_Caudovirales_phage	38.1	1.4e-25
SQF61547.1|1573680_1574445_-	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	4.2e-134
SQF61548.1|1574434_1574917_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	5.6e-92
SQF61549.1|1574904_1575132_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61550.1|1575135_1575408_-	phage protein	NA	A7J287	Streptococcus_phage	64.4	1.7e-21
SQF61551.1|1575410_1575632_-	phage associated protein	NA	NA	NA	NA	NA
SQF61552.1|1575628_1576024_-	phage protein	NA	Q5YA86	Bacillus_phage	65.6	9.4e-45
SQF61553.1|1576016_1576235_-	phage protein	NA	A0A1S5SEA6	Streptococcus_phage	64.3	1.3e-16
SQF61554.1|1576512_1578786_-	ATPase	NA	Q5YA88	Bacillus_phage	64.0	6.4e-279
SQF61555.1|1578775_1579405_-	AP2 domain protein	NA	A0A2R4P8H7	Staphylococcus_phage	43.1	9.1e-42
SQF61556.1|1579414_1580998_-	DNA/RNA helicase	NA	A0A097BY72	Enterococcus_phage	77.4	1.3e-233
SQF61557.1|1580997_1581633_-	phage protein	NA	A0A097BY29	Enterococcus_phage	46.7	4.3e-31
SQF61558.1|1581654_1582389_-	phage protein	NA	Q0R597	Streptococcus_phage	61.3	1.0e-76
SQF61559.1|1582390_1582813_-	phage protein	NA	M1I9V9	Streptococcus_phage	59.9	4.2e-35
SQF61560.1|1582852_1583932_-	phage protein	NA	A0A0K2CZH1	Paenibacillus_phage	52.6	1.8e-98
SQF61561.1|1583946_1585266_-	chromosome segregation ATPases	NA	A0A097BY67	Enterococcus_phage	64.3	2.9e-154
SQF61562.1|1585249_1585495_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61563.1|1585496_1585715_-	phage protein	NA	NA	NA	NA	NA
SQF61564.1|1585724_1585865_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	88.9	2.1e-15
SQF61565.1|1585894_1586152_-	phage protein	NA	NA	NA	NA	NA
SQF61566.1|1586558_1586789_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61567.1|1586748_1586895_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61568.1|1586914_1587121_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61569.1|1587268_1587484_-	XRE family transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
SQF61570.1|1587581_1588265_+	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQF61571.1|1588222_1588357_-	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQF61572.1|1588391_1588550_-	phage protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
SQF61573.1|1588608_1588824_+	Uncharacterised protein	NA	J7KBX0	Streptococcus_phage	95.7	8.8e-29
SQF61574.1|1588809_1588959_-	Uncharacterised protein	NA	J7KH12	Streptococcus_phage	91.8	4.3e-19
SQF61575.1|1589050_1589152_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61576.1|1589318_1590059_+	Repressor protein	NA	J7KJ52	Streptococcus_phage	92.2	1.3e-127
SQF61577.1|1590130_1590553_+	Lj965 prophage superinfection immunity protein	NA	NA	NA	NA	NA
SQF61578.1|1590725_1591823_+	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	94.8	5.1e-197
SQF61579.1|1592066_1593011_+	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
SQF61580.1|1593142_1593799_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF61581.1|1593931_1594171_-	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
SQF61582.1|1594335_1594827_-	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.2	1.7e-59
>prophage 12
LS483356	Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1	1931144	1884391	1897076	1931144		Streptococcus_phage(54.55%)	22	NA	NA
SQF61841.1|1884391_1885537_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	2.7e-84
SQF61842.1|1886780_1887428_-	Cro/CI family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	28.1	4.4e-15
SQF61843.1|1887593_1887791_+	Cro/CI family transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	72.3	3.7e-18
SQF61844.1|1887804_1888431_+	phage antirepressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	41.8	8.8e-37
SQF61845.1|1888444_1888687_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF61846.1|1888942_1889275_+	phage protein	NA	NA	NA	NA	NA
SQF61847.1|1889271_1889493_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61848.1|1889495_1889687_+	phage protein	NA	NA	NA	NA	NA
SQF61849.1|1889698_1890061_+	phage protein	NA	NA	NA	NA	NA
SQF61850.1|1890057_1890387_+	phage protein	NA	NA	NA	NA	NA
SQF61851.1|1890389_1890662_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
SQF61852.1|1890662_1891523_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	72.0	2.5e-119
SQF61853.1|1891540_1893037_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	38.0	1.1e-69
SQF61854.1|1893492_1893666_+	phage protein	NA	NA	NA	NA	NA
SQF61855.1|1893667_1893934_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	46.2	8.9e-15
SQF61856.1|1894199_1894802_+	Prophage ps3 protein 07	NA	NA	NA	NA	NA
SQF61857.1|1894791_1895121_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF61858.1|1895378_1895663_+	phage protein	NA	NA	NA	NA	NA
SQF61859.1|1895768_1896182_+	phage protein	NA	A0A1S5S8W3	Streptococcus_phage	30.8	5.1e-09
SQF61860.1|1896256_1896457_+	Uncharacterised protein	NA	S6C469	Thermus_phage	43.9	5.1e-07
SQF61861.1|1896544_1896718_+	phage protein	NA	NA	NA	NA	NA
SQF61862.1|1896692_1897076_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
