The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	621147	662798	1891095	head,integrase,tail,terminase	Streptococcus_phage(67.92%)	61	623744:623763	659340:659359
SQF57123.1|621147_621987_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQF57124.1|621961_622822_+	GDSL family lipase	NA	NA	NA	NA	NA
SQF57125.1|622799_623387_+	membrane protein	NA	NA	NA	NA	NA
SQF57126.1|623485_623761_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
623744:623763	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF57127.1|623849_624992_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQF57128.1|625115_625634_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	1.6e-31
SQF57129.1|625645_626401_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQF57130.1|626602_626815_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQF57131.1|626855_626987_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57132.1|627084_627396_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQF57133.1|627397_627583_+	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQF57134.1|628086_628473_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQF57135.1|628453_628687_+	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQF57136.1|628683_628824_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQF57137.1|628832_629039_+	phage protein	NA	NA	NA	NA	NA
SQF57138.1|629094_629424_+	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQF57139.1|629426_630353_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF57140.1|630349_630550_+	phage protein	NA	NA	NA	NA	NA
SQF57141.1|630542_631340_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQF57142.1|631461_631554_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQF57143.1|631704_632100_+	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQF57144.1|632096_633443_+	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQF57145.1|633453_633786_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQF57146.1|633782_634295_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQF57147.1|634330_634648_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQF57148.1|634644_634800_+	phage protein	NA	NA	NA	NA	NA
SQF57149.1|634796_635048_+	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQF57150.1|635123_635543_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQF57151.1|636142_636499_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF57152.1|636495_637764_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
SQF57153.1|637756_639250_+	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQF57154.1|639255_639480_+	phage protein	NA	NA	NA	NA	NA
SQF57155.1|639531_639798_+	secreted phage protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
SQF57156.1|640117_641533_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.6	2.0e-214
SQF57157.1|641612_642074_+	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQF57158.1|642098_643010_+|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.2e-113
SQF57159.1|643009_643210_+	phage protein	NA	NA	NA	NA	NA
SQF57160.1|643219_643642_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
SQF57161.1|643601_643940_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQF57162.1|643932_644169_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
SQF57163.1|644169_644505_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	1.7e-34
SQF57164.1|644516_645095_+|tail	Major tail protein	tail	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
SQF57165.1|645105_645369_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
SQF57166.1|645383_645755_+	phage protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
SQF57167.1|645754_648112_+|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.3	2.6e-134
SQF57168.1|648108_648804_+	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQF57169.1|648800_650762_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	49.0	2.4e-96
SQF57170.1|650758_651874_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	66.6	4.8e-110
SQF57171.1|651888_653172_+	gp58-like family protein	NA	Q938J9	Temperate_phage	34.7	3.0e-15
SQF57172.1|653168_653669_+	gp58-like family protein	NA	A7J2A9	Streptococcus_phage	85.8	1.3e-59
SQF57173.1|653677_654106_+	phage protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
SQF57174.1|654108_654741_+	phage protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
SQF57175.1|654752_655025_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF57176.1|655021_655249_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF57177.1|655257_655374_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQF57178.1|655367_656585_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.4e-163
SQF57179.1|656720_657845_+	phage protein, Fic family	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
SQF57180.1|658092_658875_+	Enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
SQF57181.1|658987_659170_+	paratox	NA	A3F673	Streptococcus_phage	75.0	5.3e-19
SQF57182.1|659700_661563_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	7.0e-90
659340:659359	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF57183.1|661862_662798_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
>prophage 2
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	686088	715486	1891095	transposase,protease,tRNA	Streptococcus_phage(36.36%)	27	NA	NA
SQF57207.1|686088_687117_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF57208.1|687318_688023_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF57209.1|688141_688858_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF57210.1|689152_690115_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF57211.1|690127_691933_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF57212.1|692308_693505_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF57213.1|693606_694278_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.6	8.3e-09
SQF57214.1|694340_695396_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF57215.1|695782_698401_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.9e-61
SQF57216.1|698754_698976_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF57217.1|698972_699734_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF57218.1|699752_700448_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF57219.1|700544_700970_-	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	44.9	1.1e-27
SQF57220.1|701015_701369_-	DNA-binding protein	NA	A0A1B1P773	Bacillus_phage	35.2	1.2e-06
SQF57221.1|701401_701695_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF57222.1|701790_703017_-	chloride channel protein	NA	NA	NA	NA	NA
SQF57223.1|703164_703824_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.7	1.7e-115
SQF57224.1|703801_704611_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.5	1.6e-131
SQF57225.1|704636_705596_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQF57226.1|706057_708217_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.7	1.2e-263
SQF57227.1|708236_708455_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	6.2e-14
SQF57228.1|708847_709111_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF57229.1|709115_710849_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF57230.1|711033_712461_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF57231.1|712554_713829_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF57232.1|713995_714655_+|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.7	1.7e-115
SQF57233.1|714781_715486_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	90.2	2.7e-103
>prophage 3
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1038280	1078715	1891095	integrase,portal,tail,terminase	Streptococcus_pyogenes_phage(48.28%)	60	1038068:1038113	1075943:1075988
1038068:1038113	attL	TTGATATGACAAGGCTCTTTAATGTTTTATTTAATCACTTCTTGAG	NA	NA	NA	NA
SQF57542.1|1038280_1038469_-	phage protein	NA	A3F673	Streptococcus_phage	73.3	6.1e-18
SQF57543.1|1038706_1039507_+	streptodornase	NA	NA	NA	NA	NA
SQF57544.1|1039778_1040213_+	phage membrane protein	NA	NA	NA	NA	NA
SQF57545.1|1040281_1040941_-	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	96.3	6.3e-118
SQF57546.1|1040940_1041162_-	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQF57547.1|1041171_1041945_-	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	94.6	4.6e-128
SQF57548.1|1041955_1042558_-	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQF57549.1|1042569_1043334_-	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQF57550.1|1043335_1043668_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQF57551.1|1043667_1043991_-	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQF57552.1|1044004_1044127_-	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	100.0	4.8e-16
SQF57553.1|1044140_1044488_-	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQF57554.1|1044498_1046361_-	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.8	0.0e+00
SQF57555.1|1046365_1049815_-	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.0	0.0e+00
SQF57556.1|1049815_1051300_-|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	98.8	1.8e-290
SQF57557.1|1051300_1053106_-	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	94.8	1.4e-249
SQF57558.1|1053098_1053557_-	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	93.4	7.0e-76
SQF57559.1|1053529_1053847_-	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	98.1	1.9e-51
SQF57560.1|1053859_1054363_-	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	98.7	6.3e-78
SQF57561.1|1054377_1054788_-	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	99.3	1.8e-70
SQF57562.1|1054789_1055173_-	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	93.0	1.4e-56
SQF57563.1|1055181_1055493_-	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	94.2	4.6e-47
SQF57564.1|1055489_1055834_-	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	99.1	1.5e-54
SQF57565.1|1055847_1056141_-	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	99.0	1.3e-46
SQF57566.1|1056152_1057043_-	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQF57567.1|1057061_1057631_-	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	90.5	1.4e-60
SQF57568.1|1057742_1057973_-	phage protein	NA	Q938K9	Temperate_phage	62.5	4.0e-19
SQF57569.1|1057979_1058888_-	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	94.5	2.4e-83
SQF57570.1|1058856_1060182_-|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	95.6	6.3e-234
SQF57571.1|1060181_1061456_-|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	99.8	1.9e-251
SQF57572.1|1061445_1061826_-	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQF57573.1|1062494_1062935_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF57574.1|1063208_1063379_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	98.2	1.1e-26
SQF57575.1|1063375_1063882_-	phage protein	NA	Q938L9	Temperate_phage	100.0	9.8e-95
SQF57576.1|1063878_1064049_-	phage protein	NA	Q938M0	Temperate_phage	100.0	4.2e-26
SQF57577.1|1064045_1064450_-	phage protein	NA	Q938M1	Temperate_phage	100.0	6.0e-71
SQF57578.1|1064459_1064729_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQF57579.1|1064725_1065010_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
SQF57580.1|1065003_1065255_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	100.0	4.3e-43
SQF57581.1|1065251_1065608_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
SQF57582.1|1065591_1065912_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	100.0	2.0e-53
SQF57583.1|1066156_1067077_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.7	5.2e-179
SQF57584.1|1067082_1067637_-	DNA primase	NA	J7KH16	Streptococcus_phage	93.9	1.4e-86
SQF57585.1|1067626_1068439_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	99.3	7.2e-156
SQF57586.1|1068441_1068900_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	100.0	3.8e-82
SQF57587.1|1068915_1070145_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	100.0	3.3e-237
SQF57588.1|1070246_1070927_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF57589.1|1070927_1071410_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	100.0	1.2e-78
SQF57590.1|1071636_1071951_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	100.0	1.7e-52
SQF57591.1|1071966_1072101_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	100.0	6.7e-19
SQF57592.1|1072131_1072383_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	100.0	2.8e-42
SQF57593.1|1072477_1072696_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQF57594.1|1072884_1073244_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQF57595.1|1073227_1073605_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQF57596.1|1073615_1073768_+	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	98.0	1.5e-19
SQF57597.1|1073938_1074625_+	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	100.0	5.7e-122
SQF57598.1|1074746_1075886_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	55.8	4.4e-119
SQF57599.1|1075968_1077009_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
1075943:1075988	attR	TTGATATGACAAGGCTCTTTAATGTTTTATTTAATCACTTCTTGAG	NA	NA	NA	NA
SQF57600.1|1077252_1077846_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQF57601.1|1077845_1078715_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
>prophage 4
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1089394	1143406	1891095	head,transposase,protease,tRNA	Bacillus_virus(20.0%)	51	NA	NA
SQF57613.1|1089394_1090294_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF57614.1|1090427_1090604_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF57615.1|1090721_1091630_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF57616.1|1091866_1092286_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF57617.1|1092596_1093583_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF57618.1|1093784_1094087_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57619.1|1094634_1095840_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF57620.1|1096228_1096459_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF57621.1|1096492_1097320_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.5	9.6e-132
SQF57622.1|1097297_1097957_-|transposase	truncated transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.7	1.7e-115
SQF57623.1|1098077_1099100_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF57624.1|1099222_1101646_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	1.6e-97
SQF57625.1|1101772_1103722_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	7.3e-122
SQF57626.1|1103856_1104498_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF57627.1|1104555_1105824_-	dihydroorotase	NA	NA	NA	NA	NA
SQF57628.1|1105955_1106609_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.7	1.5e-39
SQF57629.1|1106741_1107392_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF57630.1|1107420_1108284_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF57631.1|1108401_1109856_-	amidase	NA	NA	NA	NA	NA
SQF57632.1|1110052_1110682_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF57633.1|1110739_1111432_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF57634.1|1111708_1112245_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57635.1|1112466_1113372_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF57636.1|1113451_1114240_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF57637.1|1114232_1114946_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF57638.1|1115608_1116418_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	5.1e-53
SQF57639.1|1116401_1116842_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	4.4e-35
SQF57640.1|1116860_1118072_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF57641.1|1118148_1118832_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF57642.1|1119209_1121309_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.1e-121
SQF57643.1|1121366_1122110_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF57644.1|1122257_1122857_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF57645.1|1122866_1124096_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF57646.1|1124225_1124396_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF57647.1|1124415_1124913_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF57648.1|1124992_1125856_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF57649.1|1126040_1127216_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF57650.1|1127202_1128480_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF57651.1|1128709_1129699_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF57652.1|1129691_1130699_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF57653.1|1130691_1131636_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF57654.1|1131617_1132496_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF57655.1|1132789_1134022_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF57656.1|1134030_1134699_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF57657.1|1134701_1135352_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF57658.1|1135603_1137589_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF57659.1|1137670_1138081_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF57660.1|1138970_1140848_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	1.1e-63
SQF57661.1|1140844_1142053_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF57662.1|1142177_1143026_-	degV family protein	NA	NA	NA	NA	NA
SQF57663.1|1143025_1143406_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1185115	1195719	1891095		Streptococcus_phage(57.14%)	9	NA	NA
SQF57705.1|1185115_1186258_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.1e-24
SQF57706.1|1186492_1186933_+	membrane protein	NA	NA	NA	NA	NA
SQF57707.1|1186962_1188231_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF57708.1|1188318_1189671_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
SQF57709.1|1189892_1190234_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
SQF57710.1|1190294_1191461_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF57711.1|1191554_1192241_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF57712.1|1192237_1193401_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF57713.1|1193508_1195719_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 6
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1218681	1261718	1891095	transposase,bacteriocin,protease,tRNA	Bacillus_virus(14.29%)	39	NA	NA
SQF57736.1|1218681_1219296_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF57737.1|1219307_1219814_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF57738.1|1219985_1220348_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQF57739.1|1220475_1220682_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQF57740.1|1220792_1221605_-	Arginine-binding protein	NA	NA	NA	NA	NA
SQF57741.1|1221744_1225377_-	recombination helicase AddA	NA	G3MA40	Bacillus_virus	25.3	1.6e-21
SQF57742.1|1225373_1228589_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA	NA
SQF57743.1|1228739_1229657_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	37.0	1.3e-33
SQF57744.1|1229758_1230427_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	2.2e-30
SQF57745.1|1230436_1231513_-	permease family protein	NA	NA	NA	NA	NA
SQF57746.1|1231585_1231972_-	Probable type II DNA modification enzyme	NA	NA	NA	NA	NA
SQF57747.1|1231964_1232342_-	salt-stress induced protein	NA	NA	NA	NA	NA
SQF57748.1|1232451_1234857_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF57749.1|1235066_1236110_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
SQF57750.1|1236392_1236692_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF57751.1|1236678_1237257_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF57752.1|1237292_1237481_-	epuA protein	NA	NA	NA	NA	NA
SQF57753.1|1237484_1238756_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF57754.1|1238820_1239078_-	membrane protein	NA	NA	NA	NA	NA
SQF57755.1|1239343_1239760_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF57756.1|1239772_1241179_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF57757.1|1241340_1242216_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF57758.1|1242231_1243740_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF57759.1|1243755_1244292_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF57760.1|1244291_1244786_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF57761.1|1244803_1245520_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF57762.1|1245554_1245752_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF57763.1|1246159_1247182_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	6.1e-19
SQF57764.1|1247195_1249154_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	5.8e-103
SQF57765.1|1250124_1252857_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF57766.1|1253428_1254547_-	ABC transporter	NA	NA	NA	NA	NA
SQF57767.1|1254543_1255671_-	ABC transporter	NA	NA	NA	NA	NA
SQF57768.1|1255679_1256603_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF57769.1|1256625_1257309_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF57770.1|1257305_1257977_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF57771.1|1257951_1259310_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF57772.1|1259329_1260388_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF57773.1|1260384_1261335_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF57774.1|1261556_1261718_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
>prophage 7
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1269622	1338174	1891095	portal,terminase,integrase,tail,holin,transposase,tRNA,capsid,protease	Streptococcus_phage(60.29%)	88	1289671:1289691	1333467:1333487
SQF57777.1|1269622_1270144_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	82.1	1.8e-72
SQF57778.1|1270732_1272040_-	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF57779.1|1272266_1272725_+	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF57780.1|1272856_1274581_-	septation ring formation regulator	NA	NA	NA	NA	NA
SQF57781.1|1274948_1276901_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.3	6.8e-144
SQF57782.1|1276901_1277471_-	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF57783.1|1278498_1278846_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF57784.1|1278960_1280223_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.8	1.9e-94
SQF57785.1|1280215_1280500_-	chorismate mutase	NA	NA	NA	NA	NA
SQF57786.1|1280675_1281125_-	flavodoxin	NA	NA	NA	NA	NA
SQF57787.1|1281518_1282460_+	DHH family protein	NA	NA	NA	NA	NA
SQF57788.1|1282574_1282835_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF57789.1|1282932_1284132_-	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF57790.1|1284151_1284874_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF57791.1|1285116_1286580_+	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	92.1	2.2e-256
SQF57792.1|1286596_1288144_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF57793.1|1288295_1289714_-	dipeptidase	NA	NA	NA	NA	NA
1289671:1289691	attL	ACGAGTATAGTTGTACATGAA	NA	NA	NA	NA
SQF57794.1|1290025_1290784_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF57795.1|1290894_1291602_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF57796.1|1291669_1292875_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	83.3	1.6e-204
SQF57797.1|1292990_1293218_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF57798.1|1293214_1293490_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF57799.1|1293499_1294117_-	phage protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
SQF57800.1|1294119_1294551_-	phage protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
SQF57801.1|1294562_1296449_-	gp58-like family protein	NA	Q938J9	Temperate_phage	84.7	3.1e-218
SQF57802.1|1296461_1297472_-	phage hyaluronidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
SQF57803.1|1297468_1299613_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.7	0.0e+00
SQF57804.1|1299609_1300317_-	phage protein	NA	Q938K2	Temperate_phage	71.9	6.8e-94
SQF57805.1|1300316_1304240_-|tail	phage tail protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
SQF57806.1|1304449_1304776_-	phage protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
SQF57807.1|1304828_1305437_-|tail	major tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
SQF57808.1|1305452_1305878_-	phage protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
SQF57809.1|1305874_1306252_-	phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
SQF57810.1|1306248_1306596_-	phage protein	NA	J7KJ42	Streptococcus_phage	88.2	2.9e-50
SQF57811.1|1306592_1306895_-	phage protein	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
SQF57812.1|1307039_1308227_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
SQF57813.1|1308251_1308917_-|protease	phage ClpP protease	protease	M1Q115	Streptococcus_phage	78.1	3.5e-92
SQF57814.1|1308894_1310115_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
SQF57815.1|1310148_1310373_-	phage protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
SQF57816.1|1310365_1310536_-	phage protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
SQF57817.1|1310532_1312281_-|terminase	phage terminase, large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
SQF57818.1|1312290_1312521_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57819.1|1312523_1312991_-|terminase	phage terminase, small subunit	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
SQF57820.1|1313161_1313500_-	Phage endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
SQF57821.1|1313496_1313637_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57822.1|1313735_1313921_+	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQF57823.1|1313972_1314350_+	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQF57824.1|1314476_1315406_-	phage protein	NA	A0A126HAU2	Lactococcus_phage	71.8	4.9e-100
SQF57825.1|1315988_1316426_-	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	97.9	6.7e-76
SQF57826.1|1316701_1316872_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQF57827.1|1316868_1317594_-	phage protein	NA	Q938L9	Temperate_phage	44.8	3.1e-25
SQF57828.1|1317641_1318406_-	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	4.2e-134
SQF57829.1|1318395_1318878_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF57830.1|1318881_1319166_-	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
SQF57831.1|1319162_1319576_-	phage protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
SQF57832.1|1319585_1319855_-	phage protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
SQF57833.1|1319851_1320037_-	phage protein	NA	A3F626	Streptococcus_phage	94.7	1.7e-12
SQF57834.1|1320029_1320311_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	2.5e-31
SQF57835.1|1320307_1320439_-	phage protein	NA	Q938M4	Temperate_phage	44.4	3.0e-08
SQF57836.1|1320435_1320792_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	87.3	7.7e-54
SQF57837.1|1320775_1321096_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
SQF57838.1|1321092_1321506_-	phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
SQF57839.1|1321767_1323243_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
SQF57840.1|1323232_1324045_-	phage protein	NA	J7KH42	Streptococcus_phage	97.4	1.9e-153
SQF57841.1|1324047_1324506_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
SQF57842.1|1324521_1325751_-	phage DNA/RNA helicase	NA	J7KK96	Streptococcus_phage	95.4	3.3e-229
SQF57843.1|1325770_1325866_-	Helicase	NA	NA	NA	NA	NA
SQF57844.1|1325852_1326545_-	phage protein	NA	J7KC09	Streptococcus_phage	96.1	5.9e-127
SQF57845.1|1326531_1326822_-	phage protein	NA	A0A1S5PRW6	Streptococcus_phage	44.6	2.9e-19
SQF57846.1|1326952_1327135_-	Uncharacterised protein	NA	A0A2P0ZLA4	Lactobacillus_phage	43.8	4.0e-06
SQF57847.1|1327122_1327335_-	phage protein	NA	NA	NA	NA	NA
SQF57848.1|1327344_1327485_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	4.2e-16
SQF57849.1|1327481_1327727_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57850.1|1327799_1327985_-	phage protein	NA	J7KH19	Streptococcus_phage	68.9	3.5e-18
SQF57851.1|1328129_1328360_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57852.1|1328319_1328466_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57853.1|1328522_1328732_+	phage protein	NA	NA	NA	NA	NA
SQF57854.1|1328690_1328936_-	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	93.8	1.6e-34
SQF57855.1|1328977_1329184_-	phage protein	NA	A0A1X9I5S3	Streptococcus_phage	64.7	1.1e-17
SQF57856.1|1329276_1329918_+	phage protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
SQF57857.1|1330016_1330175_-	phage membrane protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
SQF57858.1|1330561_1331311_+	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	63.8	4.5e-80
SQF57859.1|1331336_1331879_+	phage protein	NA	Q4ZA70	Staphylococcus_virus	41.9	3.9e-33
SQF57860.1|1332029_1333445_+|integrase	integrase	integrase	A5GZ62	Lactococcus_phage	47.2	1.4e-109
SQF57861.1|1333641_1334553_-	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
1333467:1333487	attR	ACGAGTATAGTTGTACATGAA	NA	NA	NA	NA
SQF57862.1|1334549_1335527_-	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
SQF57863.1|1335523_1336414_-	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF57864.1|1336827_1338174_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.4e-55
>prophage 8
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1447931	1477196	1891095	transposase,bacteriocin,tRNA	Tupanvirus(14.29%)	33	NA	NA
SQF57975.1|1447931_1449875_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	8.0e-121
SQF57976.1|1450296_1451631_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF57977.1|1451632_1452631_-	glycosyltransferase	NA	NA	NA	NA	NA
SQF57978.1|1452761_1453763_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQF57979.1|1453936_1455022_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF57980.1|1455070_1455736_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF57981.1|1455746_1456124_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF57982.1|1456268_1457195_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	1.5e-77
SQF57983.1|1457405_1458089_+	membrane protein	NA	NA	NA	NA	NA
SQF57984.1|1458088_1459015_+	membrane protein	NA	NA	NA	NA	NA
SQF57985.1|1459064_1459712_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF57986.1|1459826_1460537_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF57987.1|1460551_1461019_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	7.5e-41
SQF57988.1|1461021_1463355_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	3.0e-90
SQF57989.1|1463448_1463685_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF57990.1|1463873_1465067_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF57991.1|1465188_1466691_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	3.9e-75
SQF57992.1|1466880_1467474_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF57993.1|1467470_1468298_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	3.9e-16
SQF57994.1|1468469_1469336_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF57995.1|1470406_1470676_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57996.1|1471023_1471413_-	histidine kinase	NA	NA	NA	NA	NA
SQF57997.1|1471514_1472582_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57998.1|1472826_1473237_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF57999.1|1473430_1473712_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58000.1|1474250_1474448_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF58001.1|1474460_1474688_-	BlpM	NA	NA	NA	NA	NA
SQF58002.1|1475002_1475425_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF58003.1|1475421_1475571_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF58004.1|1475879_1476062_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF58005.1|1476076_1476322_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF58006.1|1476627_1476777_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF58007.1|1476773_1477196_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1480560	1531194	1891095	transposase,bacteriocin,protease,tRNA	Bacillus_phage(20.0%)	58	NA	NA
SQF58010.1|1480560_1481178_+|bacteriocin	bacteriocin export accessory protein	bacteriocin	NA	NA	NA	NA
SQF58011.1|1481254_1481380_+	COMC family	NA	NA	NA	NA	NA
SQF58012.1|1481527_1482862_-	two-component system, AgrA family, sensor histidine kinase AgrC	NA	NA	NA	NA	NA
SQF58013.1|1482862_1483612_-	response regulator	NA	A0A1V0E029	Clostridioides_phage	28.0	9.6e-22
SQF58014.1|1484100_1484415_-|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	48.0	7.1e-19
SQF58015.1|1484517_1484814_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	42.0	6.5e-06
SQF58016.1|1485193_1485511_-	role in replication	NA	NA	NA	NA	NA
SQF58017.1|1485559_1485790_-|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF58018.1|1486689_1486917_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58019.1|1487002_1487179_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58020.1|1487156_1487381_-	blpU	NA	NA	NA	NA	NA
SQF58021.1|1487678_1487915_+|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF58022.1|1488019_1488730_+|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF58023.1|1489225_1489456_-	truncated SilB	NA	NA	NA	NA	NA
SQF58024.1|1490000_1490255_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58025.1|1490559_1491036_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF58026.1|1491055_1491952_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF58027.1|1492071_1492479_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF58028.1|1492459_1492957_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQF58029.1|1493115_1493691_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF58030.1|1493736_1494789_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF58031.1|1494947_1496720_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF58032.1|1497035_1498217_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
SQF58033.1|1498372_1498588_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF58034.1|1498584_1499094_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF58035.1|1499166_1500024_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF58036.1|1500132_1500690_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQF58037.1|1500718_1501447_-	uridylate kinase	NA	NA	NA	NA	NA
SQF58038.1|1501768_1502458_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF58039.1|1502563_1502989_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF58040.1|1503232_1503586_+	integral membrane protein	NA	NA	NA	NA	NA
SQF58041.1|1503655_1506061_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF58042.1|1506277_1507084_+	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF58043.1|1507231_1508086_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF58044.1|1508086_1508812_-	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
SQF58045.1|1508875_1509808_-	manganese-binding protein	NA	NA	NA	NA	NA
SQF58046.1|1509953_1510601_+	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF58047.1|1510697_1511039_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58048.1|1511189_1511885_-	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF58049.1|1511904_1512156_-	membrane protein	NA	NA	NA	NA	NA
SQF58050.1|1512155_1512710_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF58051.1|1512740_1514123_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.4	1.3e-32
SQF58052.1|1514295_1515633_-	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF58053.1|1515965_1516925_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF58054.1|1517000_1517699_-	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.4	2.3e-09
SQF58055.1|1517691_1517928_-	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF58056.1|1518627_1519098_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	65.8	7.8e-54
SQF58057.1|1519918_1520032_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58058.1|1520108_1520816_+	phage protein	NA	NA	NA	NA	NA
SQF58059.1|1520909_1521161_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF58060.1|1521393_1521831_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF58061.1|1522068_1522581_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF58062.1|1523021_1523774_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF58063.1|1523979_1526160_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	3.6e-170
SQF58064.1|1526179_1526614_-	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.2e-11
SQF58065.1|1526617_1527631_-	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	1.9e-97
SQF58066.1|1528125_1530123_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.2	1.0e-86
SQF58067.1|1530405_1531194_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1539724	1545758	1891095		Streptococcus_phage(100.0%)	9	NA	NA
SQF58072.1|1539724_1540552_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.5	2.2e-128
SQF58073.1|1540625_1540982_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
SQF58074.1|1541281_1541911_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF58075.1|1541957_1542350_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF58076.1|1542376_1543240_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
SQF58077.1|1543244_1543568_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF58078.1|1543971_1544211_-	Tpl protein	NA	NA	NA	NA	NA
SQF58079.1|1544229_1545105_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
SQF58080.1|1545122_1545758_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
>prophage 11
LS483357	Streptococcus pyogenes strain NCTC8326 genome assembly, chromosome: 1	1891095	1813343	1833106	1891095		Streptococcus_phage(42.86%)	25	NA	NA
SQF58317.1|1813343_1814564_-	transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.3	1.6e-05
SQF58318.1|1814574_1816557_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
SQF58319.1|1816651_1817797_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	44.9	2.7e-84
SQF58320.1|1819040_1819688_-	Cro/CI family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	28.1	4.4e-15
SQF58321.1|1819853_1820051_+	Cro/CI family transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	72.3	3.7e-18
SQF58322.1|1820064_1820679_+	phage antirepressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	42.0	1.1e-36
SQF58323.1|1820678_1820948_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF58324.1|1821203_1821536_+	phage protein	NA	NA	NA	NA	NA
SQF58325.1|1821532_1821754_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58326.1|1821756_1821948_+	phage protein	NA	NA	NA	NA	NA
SQF58327.1|1821959_1822322_+	phage protein	NA	NA	NA	NA	NA
SQF58328.1|1822318_1822648_+	phage protein	NA	NA	NA	NA	NA
SQF58329.1|1822650_1822923_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
SQF58330.1|1822923_1823784_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	72.0	2.5e-119
SQF58331.1|1823801_1825298_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	38.0	1.1e-69
SQF58332.1|1825928_1826195_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	46.2	8.9e-15
SQF58333.1|1826460_1827063_+	Prophage ps3 protein 07	NA	NA	NA	NA	NA
SQF58334.1|1827052_1827382_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF58335.1|1827639_1827924_+	phage protein	NA	NA	NA	NA	NA
SQF58336.1|1828029_1828443_+	phage protein	NA	A0A1S5S8W3	Streptococcus_phage	30.8	5.1e-09
SQF58337.1|1828517_1828718_+	Uncharacterised protein	NA	S6C469	Thermus_phage	43.9	5.1e-07
SQF58338.1|1828805_1828979_+	phage protein	NA	NA	NA	NA	NA
SQF58339.1|1828953_1829337_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQF58340.1|1829537_1830155_+	phage protein	NA	NA	NA	NA	NA
SQF58341.1|1830550_1833106_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.3	6.8e-43
