The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	36601	49035	1915789		Synechococcus_phage(28.57%)	8	NA	NA
SQF37660.1|36601_40375_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	2.7e-40
SQF37661.1|40608_42063_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF37662.1|42090_43113_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	9.0e-63
SQF37663.1|43280_43835_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	4.0e-25
SQF37664.1|44018_45566_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	4.4e-45
SQF37665.1|45623_46748_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF37666.1|46910_48266_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF37667.1|48423_49035_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	88237	104581	1915789	tRNA,integrase	Streptococcus_phage(66.67%)	23	83611:83625	99663:99677
83611:83625	attL	TTTATCAAAAACACA	NA	NA	NA	NA
SQF37712.1|88237_88957_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	26.8	1.3e-15
SQF37713.1|88949_89765_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SQF37714.1|89804_90188_-	HIT domain-containing protein	NA	NA	NA	NA	NA
SQF37715.1|90351_91497_-|integrase	Phage integrase: site-specific recombinase	integrase	A0A1X9I5Y5	Streptococcus_phage	49.7	1.9e-98
SQF37716.1|92807_93575_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF37717.1|93728_93935_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF37718.1|93968_94169_+	phage transcriptional repressor	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
SQF37719.1|94189_94597_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	68.7	8.5e-49
SQF37720.1|94610_95240_+	phage protein	NA	R9QNB1	Lactococcus_phage	43.0	9.5e-31
SQF37721.1|95484_95817_+	phage protein	NA	NA	NA	NA	NA
SQF37722.1|95813_96035_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF37723.1|96037_96229_+	phage protein	NA	NA	NA	NA	NA
SQF37724.1|96240_96570_+	phage protein	NA	NA	NA	NA	NA
SQF37725.1|96572_96845_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF37726.1|96845_97703_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	1.5e-124
SQF37727.1|97671_99360_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.3	1.1e-259
SQF37728.1|99646_99820_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	4.3e-10
99663:99677	attR	TTTATCAAAAACACA	NA	NA	NA	NA
SQF37729.1|100000_100510_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	1.6e-28
SQF37730.1|100583_101072_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF37731.1|101471_101834_+	phage protein	NA	NA	NA	NA	NA
SQF37732.1|101808_102186_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQF37733.1|102322_103063_+	phage protein	NA	NA	NA	NA	NA
SQF37734.1|103321_104581_-|tRNA	tyrosyl-tRNA synthetase	tRNA	A0A1S6UA79	Serratia_phage	41.0	9.0e-73
>prophage 3
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	348426	394460	1915789	portal,terminase,tail	Streptococcus_phage(82.0%)	58	NA	NA
SQF37955.1|348426_348918_+	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.2	1.7e-59
SQF37956.1|349082_349322_+	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
SQF37957.1|349454_350111_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF37958.1|350242_351187_-	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
SQF37959.1|351430_352528_-	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	94.8	1.7e-197
SQF37960.1|352703_353255_-	phage protein	NA	A7J267	Streptococcus_phage	92.3	9.0e-86
SQF37961.1|353265_353649_-	phage protein	NA	A7J268	Streptococcus_phage	98.4	1.5e-68
SQF37962.1|353662_354013_-	repressor - phage associated	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
SQF37963.1|354653_354845_+	phage protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
SQF37964.1|354895_355096_+	phage protein	NA	A7J271	Streptococcus_phage	92.3	4.9e-26
SQF37965.1|355183_355441_+	phage protein	NA	NA	NA	NA	NA
SQF37966.1|355469_355640_+	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQF37967.1|355632_355836_+	phage protein	NA	NA	NA	NA	NA
SQF37968.1|355832_356219_+	phage protein	NA	A7J274	Streptococcus_phage	86.6	4.0e-56
SQF37969.1|356215_356368_+	phage protein	NA	A7J275	Streptococcus_phage	88.0	6.0e-16
SQF37970.1|356364_356568_+	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
SQF37971.1|356655_356955_+	phage protein	NA	A7J277	Streptococcus_phage	96.0	3.7e-41
SQF37972.1|356954_358112_+	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQF37973.1|358126_358684_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF37974.1|358726_360649_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQF37975.1|360653_363038_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	98.0	2.6e-286
SQF37976.1|363404_363680_+	phage protein	NA	A7J283	Streptococcus_phage	97.8	1.3e-45
SQF37977.1|363676_364999_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.0	2.8e-250
SQF37978.1|364999_365170_+	phage protein	NA	A7J285	Streptococcus_phage	94.2	3.1e-21
SQF37979.1|365162_365435_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF37980.1|365437_365584_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF37981.1|365567_365984_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF37982.1|366218_366524_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	99.0	1.8e-48
SQF37983.1|366513_367791_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
SQF37984.1|367806_369339_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQF37985.1|369298_370747_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQF37986.1|370846_370963_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF37987.1|370967_371234_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQF37988.1|371395_371965_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQF37989.1|371977_372865_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF37990.1|372876_373233_+	phage protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
SQF37991.1|373243_373522_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF37992.1|373518_373863_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF37993.1|373866_374226_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF37994.1|374237_374837_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF37995.1|374890_375346_+	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
SQF37996.1|375420_375654_+	phage protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
SQF37997.1|375668_380051_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.2	1.2e-225
SQF37998.1|380062_380905_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
SQF37999.1|380914_382894_+	phage protein	NA	A7J2A7	Streptococcus_phage	92.8	0.0e+00
SQF38000.1|382890_384006_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	74.9	1.6e-142
SQF38001.1|384020_385925_+	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF38002.1|385936_386365_+	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF38003.1|386367_387006_+	phage protein	NA	A3F662	Streptococcus_phage	52.7	2.0e-44
SQF38004.1|387017_387290_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF38005.1|387286_387514_+	phage protein	NA	A7J2B3	Streptococcus_phage	97.3	2.2e-30
SQF38006.1|387526_387649_+	phage membrane protein	NA	NA	NA	NA	NA
SQF38007.1|387636_388842_+	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	82.8	1.5e-202
SQF38008.1|389120_389219_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38009.1|389538_389721_+	Paratox	NA	A3F673	Streptococcus_phage	73.3	1.7e-17
SQF38010.1|389947_392776_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	7.7e-306
SQF38011.1|392890_393964_+	Xaa-Pro dipeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	32.2	1.3e-16
SQF38012.1|393998_394460_+	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	55.1	1.1e-33
>prophage 4
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	577309	616545	1915789	portal,terminase,tail,integrase	Streptococcus_pyogenes_phage(63.79%)	61	561774:561789	622594:622609
561774:561789	attL	GACCAACACCCTGATT	NA	NA	NA	NA
SQF38205.1|577309_578476_-|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	42.2	7.0e-80
SQF38206.1|578653_580075_-	phage membrane protein	NA	M1PLF9	Streptococcus_phage	74.5	7.4e-140
SQF38207.1|580089_580476_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	77.6	8.3e-54
SQF38208.1|580459_580801_-	phage repressor protein	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
SQF38209.1|580998_581211_+	phage family protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
SQF38210.1|581238_581958_+	phage antirepressor family protein	NA	A0A141E1D3	Streptococcus_phage	69.2	2.8e-87
SQF38211.1|581961_582129_+	phage protein	NA	NA	NA	NA	NA
SQF38212.1|582055_582268_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38213.1|582367_582619_+	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	96.4	4.4e-40
SQF38214.1|582649_582784_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	3.3e-18
SQF38215.1|582799_583114_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQF38216.1|583127_583958_+	dnaD and phage-associated domain-containing protein	NA	A0A1S5S918	Streptococcus_phage	54.7	6.4e-67
SQF38217.1|583944_584727_+	DNA replication protein DnaC	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	97.7	4.6e-144
SQF38218.1|584717_584855_+	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQF38219.1|584867_585221_+	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
SQF38220.1|585201_585456_+	phage protein	NA	Q938N0	Temperate_phage	97.6	6.3e-42
SQF38221.1|585477_585960_+	phage protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
SQF38222.1|585960_586635_+	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	8.4e-102
SQF38223.1|586627_587047_+	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	99.3	2.1e-71
SQF38224.1|587255_587696_+	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	98.6	1.6e-80
SQF38225.1|587692_588049_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	91.5	6.9e-55
SQF38226.1|588045_588228_+	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	73.0	8.5e-17
SQF38227.1|588273_588558_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQF38228.1|588554_588968_+	phage protein	NA	Q938M1	Temperate_phage	62.4	1.2e-34
SQF38229.1|588964_589249_+	phage protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
SQF38230.1|589252_589735_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	96.2	1.4e-90
SQF38231.1|589724_590489_+	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	1.6e-133
SQF38232.1|590536_590830_+	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	99.0	2.7e-49
SQF38233.1|590826_590925_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38234.1|591194_591632_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
SQF38235.1|592106_592487_+	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQF38236.1|592476_593751_+|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQF38237.1|593750_595076_+|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQF38238.1|595044_595953_+	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQF38239.1|595959_596226_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQF38240.1|596375_596948_+	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
SQF38241.1|596965_597856_+	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	98.8	5.5e-85
SQF38242.1|597868_598162_+	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQF38243.1|598175_598520_+	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQF38244.1|598516_598828_+	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	98.1	1.0e-49
SQF38245.1|598836_599220_+	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQF38246.1|599221_599632_+	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQF38247.1|599643_600150_+	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQF38248.1|600162_600480_+	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQF38249.1|600452_600911_+	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
SQF38250.1|600903_602709_+	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
SQF38251.1|602709_604194_+|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.6	1.3e-291
SQF38252.1|604194_607635_+	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQF38253.1|607639_609502_+	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	100.0	0.0e+00
SQF38254.1|609512_609860_+	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQF38255.1|609873_609996_+	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	100.0	4.8e-16
SQF38256.1|610009_610333_+	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQF38257.1|610332_610665_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQF38258.1|610666_611431_+	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQF38259.1|611442_612045_+	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.3	1.3e-90
SQF38260.1|612055_612829_+	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQF38261.1|612838_613060_+	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQF38262.1|613059_613719_+	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQF38263.1|613840_614596_-	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF38264.1|614816_614999_+	paratox	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
SQF38265.1|615189_616545_+	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	33.4	2.3e-74
622594:622609	attR	AATCAGGGTGTTGGTC	NA	NA	NA	NA
>prophage 5
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	716587	767401	1915789	portal,terminase,tail,integrase	Streptococcus_phage(55.17%)	71	719184:719203	763943:763962
SQF38354.1|716587_717427_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQF38355.1|717401_718262_+	GDSL family lipase	NA	NA	NA	NA	NA
SQF38356.1|718239_718827_+	membrane protein	NA	NA	NA	NA	NA
SQF38357.1|718925_719201_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
719184:719203	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF38358.1|719290_720433_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.6	3.7e-174
SQF38359.1|720556_720823_-	phage protein	NA	NA	NA	NA	NA
SQF38360.1|720834_721215_-	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQF38361.1|721218_721491_-	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	72.8	4.8e-32
SQF38362.1|722263_722413_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38363.1|722719_722911_+	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQF38364.1|722922_723639_+	phage antirepressor KilAC domain-containing protein	NA	C9WB91	Streptococcus_virus	87.7	6.8e-118
SQF38365.1|723670_723937_+	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF38366.1|723871_724678_-	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF38367.1|724819_725059_-	phage protein	NA	NA	NA	NA	NA
SQF38368.1|725225_725411_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF38369.1|725487_725745_+	phage protein	NA	NA	NA	NA	NA
SQF38370.1|725773_725944_+	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQF38371.1|725936_726140_+	phage protein	NA	NA	NA	NA	NA
SQF38372.1|726136_726523_+	phage protein	NA	A7J274	Streptococcus_phage	86.6	4.0e-56
SQF38373.1|726519_726672_+	phage protein	NA	A7J275	Streptococcus_phage	88.0	6.0e-16
SQF38374.1|726668_726872_+	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
SQF38375.1|726959_727259_+	phage protein	NA	A7J277	Streptococcus_phage	96.0	3.7e-41
SQF38376.1|727258_728416_+	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQF38377.1|728430_728988_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF38378.1|729030_730953_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQF38379.1|730957_733342_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	1.7e-277
SQF38380.1|733727_734003_+	phage protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
SQF38381.1|733999_735322_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.3	1.3e-250
SQF38382.1|735322_735493_+	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQF38383.1|735485_735758_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF38384.1|735760_735907_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38385.1|735890_736307_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF38386.1|736397_736850_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	91.4	1.8e-63
SQF38387.1|736827_738135_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	76.0	9.0e-185
SQF38388.1|738146_739649_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
SQF38389.1|739629_741192_+	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	1.6e-47
SQF38390.1|741195_741381_+	phage protein	NA	NA	NA	NA	NA
SQF38391.1|741450_741765_+	phage protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
SQF38392.1|741767_742034_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	71.6	6.6e-26
SQF38393.1|742177_742711_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	84.2	1.2e-15
SQF38394.1|742720_743101_+	structural phage protein	NA	NA	NA	NA	NA
SQF38395.1|743103_744186_+	phage protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	56.9	2.2e-104
SQF38396.1|744195_744438_+	phage protein	NA	NA	NA	NA	NA
SQF38397.1|744451_744805_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF38398.1|744801_745110_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF38399.1|745099_745456_+	phage protein	NA	A0A097BY98	Enterococcus_phage	47.9	3.0e-18
SQF38400.1|745452_745842_+	phage protein	NA	Q8LTQ5	Lactococcus_phage	69.8	2.2e-46
SQF38401.1|745851_746502_+|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	53.0	2.2e-43
SQF38402.1|746554_746914_+	phage protein	NA	D7RWD6	Brochothrix_phage	45.5	1.5e-20
SQF38403.1|746955_747285_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	4.3e-11
SQF38404.1|747299_750935_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	29.6	5.2e-04
SQF38405.1|750966_751746_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	2.1e-64
SQF38406.1|751742_753791_+	phage protein	NA	A3F656	Streptococcus_phage	84.0	0.0e+00
SQF38407.1|753790_754804_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	97.9	2.1e-181
SQF38408.1|754818_756705_+	gp58-like family protein	NA	Q938J9	Temperate_phage	84.7	3.1e-218
SQF38409.1|756716_757145_+	phage protein	NA	Q938J8	Temperate_phage	88.6	3.7e-63
SQF38410.1|757147_757780_+	phage protein	NA	Q938J7	Temperate_phage	50.0	2.6e-44
SQF38411.1|757790_758087_+	phage protein	NA	Q938J6	Temperate_phage	99.0	2.9e-46
SQF38412.1|758083_758269_+	phage protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
SQF38413.1|758272_758383_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF38414.1|758379_758937_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	A7J2B5	Streptococcus_phage	85.9	6.5e-92
SQF38415.1|759169_759304_+	AP2 domain protein	NA	NA	NA	NA	NA
SQF38416.1|759300_759861_+	AP2 domain protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	47.7	3.8e-31
SQF38417.1|759970_760615_+	bacterial SH3 domain protein	NA	A7J2B5	Streptococcus_phage	77.7	1.4e-93
SQF38418.1|760893_760992_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38419.1|761480_762194_+	mitogen	NA	Q938J1	Temperate_phage	59.8	6.9e-78
SQF38420.1|762669_763245_+	phospholipase A2 SlaA	NA	Q938J0	Temperate_phage	100.0	1.7e-111
SQF38421.1|763238_763526_+	phage membrane protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
SQF38422.1|763590_763773_+	paratox	NA	A3F673	Streptococcus_phage	78.3	8.2e-20
SQF38423.1|764303_766166_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
763943:763962	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQF38424.1|766465_767401_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
>prophage 6
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	790687	847056	1915789	transposase,tRNA,integrase,protease	Enterococcus_phage(21.43%)	53	786136:786152	836234:836250
786136:786152	attL	TTCTAGTGCAGCTTTTT	NA	NA	NA	NA
SQF38448.1|790687_791716_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF38449.1|791917_792622_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF38450.1|792740_793457_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF38451.1|793751_794714_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF38452.1|794726_796532_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF38453.1|796907_798104_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF38454.1|798205_798877_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF38455.1|798939_799995_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF38456.1|800381_803000_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	6.7e-62
SQF38457.1|803184_803319_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38458.1|803359_803575_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF38459.1|803571_804333_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF38460.1|804351_805062_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF38461.1|805039_805129_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF38462.1|805133_806255_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF38463.1|806454_806826_-|integrase	integrase core domain protein	integrase	A0A0P0I4A4	Acinetobacter_phage	40.7	1.5e-20
SQF38464.1|806829_807285_-|transposase	transposase	transposase	U5P429	Shigella_phage	34.8	1.8e-15
SQF38465.1|807317_807611_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF38466.1|807748_809062_-	chloride channel protein	NA	NA	NA	NA	NA
SQF38467.1|809036_809996_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQF38468.1|810030_810378_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38469.1|810328_812488_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.4	1.8e-262
SQF38470.1|812507_812726_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF38471.1|813118_813382_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF38472.1|813386_815120_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF38473.1|815304_816732_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF38474.1|816826_818101_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF38475.1|818211_819297_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF38476.1|819394_820021_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF38477.1|820100_820364_+	membrane protein	NA	NA	NA	NA	NA
SQF38478.1|820416_821226_-	membrane protein	NA	NA	NA	NA	NA
SQF38479.1|821370_821868_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF38480.1|821867_823538_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	3.9e-47
SQF38481.1|823810_824752_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQF38482.1|824955_827334_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF38483.1|827870_829067_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF38484.1|829240_830500_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF38485.1|830856_831510_+	immunoglobulin G-binding protein G	NA	NA	NA	NA	NA
SQF38486.1|831747_832290_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF38487.1|832298_833582_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF38488.1|833597_834458_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF38489.1|834459_835425_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF38490.1|835535_836819_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
836234:836250	attR	TTCTAGTGCAGCTTTTT	NA	NA	NA	NA
SQF38491.1|836811_837303_+	shikimate kinase	NA	NA	NA	NA	NA
SQF38492.1|837510_838962_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF38493.1|839043_840399_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.7	5.6e-254
SQF38494.1|840688_841201_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.5	1.1e-90
SQF38495.1|841285_841687_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF38496.1|841791_843276_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF38497.1|843649_844870_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF38498.1|844989_845355_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF38499.1|845469_846201_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF38500.1|846249_847056_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.3	2.1e-62
>prophage 7
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	861733	923587	1915789	integrase,transposase,portal,tail,terminase	Streptococcus_phage(40.91%)	84	872682:872741	917162:917260
SQF38515.1|861733_862321_-|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.1	1.7e-26
SQF38516.1|862262_862514_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF38517.1|862694_863531_-	maltose transport system permease	NA	NA	NA	NA	NA
SQF38518.1|863530_864892_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF38519.1|865165_866413_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF38520.1|866657_867677_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.5	1.6e-16
SQF38521.1|867791_869285_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF38522.1|869319_871584_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF38523.1|871840_872461_-	phage protein	NA	NA	NA	NA	NA
872682:872741	attL	GGTAACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTA	NA	NA	NA	NA
SQF38524.1|872822_873911_-|integrase	integrase	integrase	Q38159	Streptococcus_phage	99.4	4.2e-204
SQF38525.1|874159_874969_-	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQF38526.1|874981_875725_-	phage transcriptional repressor	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
SQF38527.1|876083_876233_+	Uncharacterised protein	NA	J7KH12	Streptococcus_phage	91.8	4.3e-19
SQF38528.1|876218_876434_-	Uncharacterised protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
SQF38529.1|876492_876651_+	phage membrane protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
SQF38530.1|876680_877280_-	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQF38531.1|877333_877543_+	phage protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
SQF38532.1|877531_877918_-	phage protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
SQF38533.1|877991_878219_+	phage protein	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
SQF38534.1|878326_878836_-	phage protein	NA	NA	NA	NA	NA
SQF38535.1|878890_879136_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF38536.1|879094_879304_-	phage protein	NA	NA	NA	NA	NA
SQF38537.1|879453_879693_-	phage protein	NA	NA	NA	NA	NA
SQF38538.1|879859_880045_+	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF38539.1|880123_880420_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
SQF38540.1|880416_880554_+	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	97.8	4.9e-17
SQF38541.1|880537_880651_+	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	75.0	7.6e-08
SQF38542.1|880634_880964_+	phage protein	NA	A1EAC2	Streptococcus_phage	41.6	2.7e-13
SQF38543.1|880963_881158_+	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQF38544.1|881154_881439_+	phage protein	NA	NA	NA	NA	NA
SQF38545.1|881435_882119_+	phage protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
SQF38546.1|882193_883558_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	3.8e-194
SQF38547.1|883562_884045_+	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
SQF38548.1|884062_885616_+	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.2	2.8e-209
SQF38549.1|885882_886752_+	phage protein	NA	A0A1P8BME8	Lactococcus_phage	65.2	9.8e-103
SQF38550.1|886705_887056_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	89.4	2.6e-46
SQF38551.1|887039_887396_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	90.7	2.6e-54
SQF38552.1|887392_887572_+	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	73.0	8.4e-17
SQF38553.1|887620_887896_+	phage protein	NA	J7KDH9	Streptococcus_phage	73.6	2.9e-32
SQF38554.1|887892_888162_+	phage protein	NA	Q938M2	Temperate_phage	88.8	1.8e-39
SQF38555.1|888171_888552_+	YopX protein	NA	A3F627	Streptococcus_phage	63.5	2.6e-36
SQF38556.1|888548_888833_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	8.9e-37
SQF38557.1|888834_889470_+	phage protein	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
SQF38558.1|889743_890178_+	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
SQF38559.1|890755_891670_+	phage protein	NA	NA	NA	NA	NA
SQF38560.1|891688_892150_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38561.1|892287_892665_-	phage protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
SQF38562.1|892716_892902_-	phage protein	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
SQF38563.1|893000_893432_+|terminase	terminase	terminase	A0A1S5SCD2	Streptococcus_phage	69.9	2.2e-47
SQF38564.1|893409_894717_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
SQF38565.1|894728_896231_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
SQF38566.1|896211_897225_+	phage protein	NA	O80166	Streptococcus_virus	44.2	3.6e-48
SQF38567.1|897211_897775_+	phage protein	NA	NA	NA	NA	NA
SQF38568.1|897778_897964_+	phage protein	NA	NA	NA	NA	NA
SQF38569.1|898349_898616_+	secreted phage protein	NA	Q938K9	Temperate_phage	94.3	1.2e-35
SQF38570.1|898759_899293_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQF38571.1|899302_899683_+	structural protein	NA	A0A286QRN6	Streptococcus_phage	37.8	1.1e-10
SQF38572.1|899685_900768_+	phage protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	56.6	5.0e-104
SQF38573.1|900777_901020_+	phage protein	NA	NA	NA	NA	NA
SQF38574.1|901033_901387_+	phage protein	NA	O80172	Streptococcus_virus	49.6	1.1e-25
SQF38575.1|901383_901692_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF38576.1|901681_902038_+	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.7e-17
SQF38577.1|902034_902424_+	phage protein	NA	B5SP36	Lactococcus_phage	69.0	8.4e-46
SQF38578.1|902433_903123_+|tail	major tail protein	tail	D7RWD5	Brochothrix_phage	52.2	4.5e-42
SQF38579.1|903176_903530_+	phage protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
SQF38580.1|903571_903901_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
SQF38581.1|903915_907551_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQF38582.1|907583_908363_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
SQF38583.1|908359_910411_+	phage protein	NA	A3F656	Streptococcus_phage	86.8	0.0e+00
SQF38584.1|910407_911421_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	99.7	2.0e-184
SQF38585.1|911435_913319_+	phage protein	NA	Q938J9	Temperate_phage	96.3	2.3e-250
SQF38586.1|913330_913762_+	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF38587.1|913764_914382_+	phage protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
SQF38588.1|914391_914664_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	4.2e-36
SQF38589.1|914660_914888_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF38590.1|914896_915007_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF38591.1|915003_916206_+	phage associated protein	NA	Q938J4	Temperate_phage	98.0	2.9e-238
SQF38592.1|916484_916583_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38593.1|916901_917090_+	paratox	NA	A3F673	Streptococcus_phage	81.4	6.5e-20
SQF38594.1|917680_918295_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
917162:917260	attR	GGTAACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
SQF38595.1|918427_919213_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF38596.1|919222_919921_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	5.1e-09
SQF38597.1|919920_920292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF38598.1|920476_923587_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	3.7e-120
>prophage 8
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	1171826	1228022	1915789	transposase,tRNA,head,protease	Bacillus_phage(28.57%)	53	NA	NA
SQF38844.1|1171826_1172726_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF38845.1|1172859_1173036_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF38846.1|1173153_1174062_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF38847.1|1174298_1174718_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF38848.1|1175028_1176015_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF38849.1|1176213_1176516_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38850.1|1177062_1178268_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF38851.1|1178659_1178890_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF38852.1|1178953_1179976_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF38853.1|1180098_1182522_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.2	5.9e-97
SQF38854.1|1182755_1183574_-	phosphate ABC transporter ATPase	NA	NA	NA	NA	NA
SQF38855.1|1183640_1185590_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	5.6e-122
SQF38856.1|1185724_1186366_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF38857.1|1186423_1187692_-	dihydroorotase	NA	NA	NA	NA	NA
SQF38858.1|1187823_1188477_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.7	2.6e-39
SQF38859.1|1188609_1189260_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF38860.1|1189288_1190152_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF38861.1|1190269_1191724_-	amidase	NA	NA	NA	NA	NA
SQF38862.1|1191920_1192550_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF38863.1|1192607_1193300_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF38864.1|1193576_1194113_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF38865.1|1194334_1195240_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF38866.1|1195319_1196108_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF38867.1|1196100_1196871_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF38868.1|1197398_1198208_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	8.7e-53
SQF38869.1|1198191_1198632_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
SQF38870.1|1198650_1199862_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF38871.1|1199938_1200622_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF38872.1|1200999_1203099_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.4	3.3e-120
SQF38873.1|1203156_1203900_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF38874.1|1204047_1204647_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF38875.1|1204656_1205886_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF38876.1|1206015_1206186_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF38877.1|1206205_1206703_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF38878.1|1206782_1207622_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF38879.1|1207830_1209006_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF38880.1|1208992_1210270_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF38881.1|1210499_1211489_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF38882.1|1211475_1212489_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF38883.1|1212481_1213426_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF38884.1|1213407_1214286_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF38885.1|1214579_1215812_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF38886.1|1215820_1216489_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF38887.1|1216491_1217142_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF38888.1|1217361_1219374_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF38889.1|1219455_1219866_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF38890.1|1220757_1222635_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	3.3e-63
SQF38891.1|1222631_1223840_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.3	1.2e-37
SQF38892.1|1223964_1224813_-	degV family protein	NA	NA	NA	NA	NA
SQF38893.1|1224812_1225193_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF38894.1|1225420_1225597_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF38895.1|1226096_1227122_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF38896.1|1227803_1228022_+|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	54.4	1.7e-08
>prophage 9
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	1264275	1274895	1915789		Streptococcus_phage(57.14%)	9	NA	NA
SQF38930.1|1264275_1265418_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
SQF38931.1|1265652_1266093_+	membrane protein	NA	NA	NA	NA	NA
SQF38932.1|1266122_1267391_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF38933.1|1267478_1268831_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	2.0e-30
SQF38934.1|1269051_1269393_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF38936.1|1269453_1270620_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF38937.1|1270713_1271400_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF38939.1|1271413_1272577_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF38940.1|1272684_1274895_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 10
LS483347	Streptococcus pyogenes strain NCTC8324 genome assembly, chromosome: 1	1915789	1843308	1852733	1915789		Streptococcus_phage(75.0%)	12	NA	NA
SQF40113.1|1843308_1843581_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF40115.1|1843581_1844448_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	3.6e-121
SQF40117.1|1844459_1845383_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A1W6JQD6	Staphylococcus_phage	40.5	1.5e-45
SQF40119.1|1845446_1845854_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF40121.1|1846147_1846402_+	phage protein	NA	NA	NA	NA	NA
SQF40123.1|1846398_1846572_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	4.3e-10
SQF40125.1|1846752_1847262_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	1.6e-28
SQF40126.1|1847335_1847824_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF40132.1|1848223_1848586_+	phage protein	NA	NA	NA	NA	NA
SQF40138.1|1848560_1848944_+	phage protein	NA	J7KDQ1	Streptococcus_phage	40.9	1.3e-14
SQF40145.1|1849148_1849781_+	phage protein	NA	NA	NA	NA	NA
SQF40151.1|1850177_1852733_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.7	1.2e-42
