assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900475035.1_41965_F01	LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1	803002-803102	1	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA|262aa|up_6|LS483338.1_794385_795171_-,NA	NA|263aa|up_9|LS483338.1_791958_792747_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|63aa|up_8|LS483338.1_792861_793050_+	cd06603, GH31_GANC_GANAB_alpha, neutral alpha-glucosidase C, neutral alpha-glucosidase AB	NA|205aa|up_7|LS483338.1_793640_794255_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|LS483338.1_794385_795171_-	NA	NA|233aa|up_5|LS483338.1_795180_795879_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|LS483338.1_795878_796250_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|LS483338.1_796434_799545_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|LS483338.1_799624_800638_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|LS483338.1_800700_802203_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|LS483338.1_802420_802978_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|LS483338.1_803153_804968_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|LS483338.1_805163_805499_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|LS483338.1_805605_806247_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|LS483338.1_806256_806886_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|LS483338.1_806901_807738_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|LS483338.1_808106_808880_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|LS483338.1_809249_810485_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|LS483338.1_810604_811927_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|LS483338.1_812456_814775_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|LS483338.1_815137_815386_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCA_900475035.1_41965_F01	LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	2	981627-981992	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	5,5,4	5	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA,NA|214aa|down_8|LS483338.1_991889_992531_-	NA|263aa|up_9|LS483338.1_970377_971166_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|LS483338.1_971169_972819_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|LS483338.1_972954_973782_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|LS483338.1_973778_974588_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|LS483338.1_974604_975096_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|LS483338.1_975122_975548_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|LS483338.1_975754_976774_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|LS483338.1_976903_977341_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|482aa|up_1|LS483338.1_977526_978972_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_0|LS483338.1_979273_981106_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	csn2|221aa|down_0|LS483338.1_982094_982757_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|104aa|down_1|LS483338.1_982746_983058_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483338.1_983084_983954_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|LS483338.1_983953_988060_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|LS483338.1_988538_989171_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|LS483338.1_989170_989935_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|LS483338.1_989934_990687_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|399aa|down_7|LS483338.1_990696_991893_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|LS483338.1_991889_992531_-	NA	NA|452aa|down_9|LS483338.1_992654_994010_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
