The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	36589	48951	1746380		Synechococcus_phage(28.57%)	8	NA	NA
SQF22266.1|36589_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.5	3.6e-40
SQF22267.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	1.7e-54
SQF22268.1|42005_43028_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	9.0e-63
SQF22269.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF22270.1|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQF22271.1|45539_46664_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF22272.1|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF22273.1|48459_48951_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	311377	365941	1746380	head,tail,terminase,capsid,tRNA	Temperate_phage(63.33%)	78	NA	NA
SQF22515.1|311377_311686_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF22516.1|311688_312234_+	colicin V production family protein	NA	NA	NA	NA	NA
SQF22517.1|312382_314722_+	DNA mismatch repair protein MutS	NA	Q94M10	Lactobacillus_phage	46.8	4.8e-19
SQF22518.1|314725_315226_+	acid phosphatase	NA	NA	NA	NA	NA
SQF22519.1|315306_315621_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	42.3	5.1e-17
SQF22520.1|315672_316260_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF22521.1|316436_317591_-	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	29.8	1.3e-22
SQF22522.1|317758_318052_+	SpeK	NA	NA	NA	NA	NA
SQF22523.1|318224_318515_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
SQF22524.1|318536_319028_+	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.8	1.3e-59
SQF22525.1|319192_319432_+	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
SQF22526.1|319562_320219_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF22527.1|320351_321296_-	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
SQF22528.1|321539_322637_-	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	98.1	1.6e-203
SQF22529.1|322812_323334_-	phage protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
SQF22530.1|323344_323725_-	phage protein	NA	Q938N7	Temperate_phage	100.0	5.3e-69
SQF22531.1|323738_324098_-	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
SQF22532.1|324893_325085_+	phage protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
SQF22533.1|325095_325824_+	phage antirepressor protein	NA	Q938N5	Temperate_phage	99.6	3.4e-133
SQF22534.1|325856_326006_+	phage protein	NA	Q938N4	Temperate_phage	100.0	1.8e-20
SQF22535.1|326002_326203_-	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	70.8	3.1e-20
SQF22536.1|326278_326446_+	phage protein	NA	NA	NA	NA	NA
SQF22537.1|326372_326585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22538.1|326691_326949_+	phage protein	NA	NA	NA	NA	NA
SQF22539.1|326977_327163_+	phage protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
SQF22540.1|327262_327514_+	replication protein	NA	A0A141E1D1	Streptococcus_phage	39.0	7.4e-11
SQF22541.1|327659_328046_+	DNA replication protein dnaD	NA	Q938N2	Temperate_phage	77.5	1.1e-48
SQF22542.1|328026_328239_+	phage protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
SQF22543.1|328244_328385_+	phage protein	NA	NA	NA	NA	NA
SQF22544.1|328393_328600_+	phage protein	NA	NA	NA	NA	NA
SQF22545.1|328655_328985_+	phage protein	NA	J7KGX3	Streptococcus_phage	86.2	1.1e-46
SQF22546.1|328987_329917_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF22547.1|329913_330711_+	phage protein	NA	J7KGZ1	Streptococcus_phage	81.5	6.4e-125
SQF22548.1|330720_330888_+	phage protein	NA	A0A1S5SEF3	Streptococcus_phage	55.6	6.0e-09
SQF22549.1|330912_331386_+	phage Holliday junction resolvase	NA	A0A286QMU6	Streptococcus_phage	48.8	4.6e-30
SQF22550.1|331372_331567_+	phage protein	NA	A3F626	Streptococcus_phage	91.9	2.6e-11
SQF22551.1|331563_331977_+	phage protein	NA	Q938M1	Temperate_phage	65.2	4.9e-36
SQF22552.1|331973_332258_+	phage protein	NA	A3F628	Streptococcus_phage	97.9	1.4e-42
SQF22553.1|332261_332744_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
SQF22554.1|332733_333498_+	Adenine-specific methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	2.8e-133
SQF22555.1|333545_333839_+	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	99.0	2.7e-49
SQF22556.1|333835_333934_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22557.1|334203_334641_+	phage protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
SQF22558.1|335359_335878_+	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
SQF22559.1|335856_336534_+	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	99.6	2.5e-130
SQF22560.1|336986_337364_+	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
SQF22561.1|337414_337888_+	phage protein	NA	Q938L4	Temperate_phage	99.4	4.3e-76
SQF22562.1|337970_339182_+|terminase	phage terminase	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
SQF22563.1|339195_340698_+|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	96.6	4.6e-273
SQF22564.1|340702_342199_+|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	78.0	1.0e-208
SQF22565.1|342195_342423_+	phage protein	NA	NA	NA	NA	NA
SQF22566.1|342496_342763_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	87.5	2.7e-35
SQF22567.1|342899_343508_+	phage protein	NA	Q938K8	Temperate_phage	92.6	2.4e-87
SQF22568.1|343511_344330_+|head	putative major head protein	head	Q79S85	Temperate_phage	96.0	1.5e-140
SQF22569.1|344383_344800_+	phage protein	NA	Q938K7	Temperate_phage	89.2	1.1e-51
SQF22570.1|344789_345122_+|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	94.5	2.6e-56
SQF22571.1|345121_345478_+	phage protein	NA	Q79S88	Temperate_phage	96.6	6.5e-61
SQF22572.1|345474_345873_+|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	96.2	3.0e-67
SQF22573.1|345872_346358_+|tail	major tail shaft protein	tail	Q938K6	Temperate_phage	76.9	6.1e-62
SQF22574.1|346403_346838_+	phage protein	NA	Q938K5	Temperate_phage	74.3	4.3e-51
SQF22575.1|346846_347428_+	phage Gp15 protein	NA	Q938K4	Temperate_phage	72.0	5.6e-78
SQF22576.1|347417_350678_+	phage protein	NA	Q938K3	Temperate_phage	99.7	0.0e+00
SQF22577.1|350674_351391_+	phage protein	NA	Q938K2	Temperate_phage	99.2	7.2e-136
SQF22578.1|351387_353532_+	Phage endopeptidase	NA	Q938K1	Temperate_phage	96.6	0.0e+00
SQF22579.1|353528_354641_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	66.2	2.4e-125
SQF22580.1|354655_356539_+	gp58-like family protein	NA	Q938J9	Temperate_phage	75.9	4.5e-185
SQF22581.1|356547_356976_+	phage protein	NA	Q938J8	Temperate_phage	82.9	4.0e-57
SQF22582.1|356978_357590_+	phage protein	NA	Q938J7	Temperate_phage	95.1	1.7e-85
SQF22583.1|357599_357896_+	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQF22584.1|357892_358078_+	phage protein	NA	Q938J5	Temperate_phage	96.7	1.1e-24
SQF22585.1|358081_358192_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	6.7e-09
SQF22586.1|358188_359394_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	86.3	1.2e-210
SQF22587.1|359533_360058_+	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF22588.1|360045_360912_+	phage protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
SQF22589.1|360961_361288_-	phage membrane protein	NA	NA	NA	NA	NA
SQF22590.1|361667_362468_-	streptodornase	NA	NA	NA	NA	NA
SQF22591.1|362704_362887_+	paratox	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
SQF22592.1|363112_365941_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	7.7e-306
>prophage 3
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	677794	736967	1746380	tRNA,integrase,transposase,protease	Enterococcus_phage(21.43%)	53	670884:670900	743579:743595
670884:670900	attL	TATTAATTTTGCAGAAA	NA	NA	NA	NA
SQF22874.1|677794_678823_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF22875.1|679024_679729_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF22876.1|679847_680564_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF22877.1|680858_681821_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF22878.1|681833_683639_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF22879.1|684014_685211_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF22880.1|685312_685984_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF22881.1|686046_687102_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF22882.1|687488_690107_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
SQF22883.1|690461_690683_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF22884.1|690679_691120_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF22885.1|691119_691440_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF22886.1|691458_692154_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF22887.1|692245_692467_-|transposase	transposase	transposase	U5P429	Shigella_phage	44.3	2.5e-10
SQF22888.1|693109_693403_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF22889.1|693498_694812_-	chloride channel protein	NA	NA	NA	NA	NA
SQF22890.1|694786_695746_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQF22891.1|696078_698238_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.7	2.1e-263
SQF22892.1|698257_698476_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF22893.1|698868_699132_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF22894.1|699136_700870_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF22895.1|701054_702482_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF22896.1|702576_703851_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF22897.1|703960_705046_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF22898.1|705143_705770_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF22899.1|705849_706113_+	membrane protein	NA	NA	NA	NA	NA
SQF22900.1|706165_706975_-	membrane protein	NA	NA	NA	NA	NA
SQF22901.1|707119_707617_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF22902.1|707616_709287_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
SQF22903.1|709560_710502_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQF22904.1|710705_713063_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF22905.1|713598_714795_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF22906.1|714968_716228_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF22907.1|716585_717491_+	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQF22908.1|717728_718271_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF22909.1|718279_719563_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF22910.1|719578_720439_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF22911.1|720440_721406_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF22912.1|721516_722800_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF22913.1|722792_723284_+	shikimate kinase	NA	NA	NA	NA	NA
SQF22914.1|723491_724943_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF22915.1|725024_726383_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	98.9	3.0e-255
SQF22916.1|726890_727313_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.4	1.4e-73
SQF22917.1|727397_727799_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF22918.1|727903_729388_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF22919.1|729760_730981_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF22920.1|731100_731466_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF22921.1|731580_732312_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF22922.1|732481_732652_-|integrase	integrase	integrase	U5P429	Shigella_phage	46.3	2.0e-07
SQF22923.1|733083_733377_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF22924.1|733454_734765_-	membrane protein	NA	NA	NA	NA	NA
SQF22925.1|734988_735861_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF22926.1|736160_736967_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	49.6	5.4e-63
743579:743595	attR	TATTAATTTTGCAGAAA	NA	NA	NA	NA
>prophage 4
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	767096	799545	1746380	integrase,holin	Streptococcus_pyogenes_phage(33.33%)	48	770463:770522	793125:793220
SQF22955.1|767096_769361_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF22956.1|769617_770238_-	phage protein	NA	NA	NA	NA	NA
770463:770522	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
SQF22957.1|770600_771689_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
SQF22958.1|771809_772703_-	phage protein	NA	A0A1I9LJQ0	Stx_converting_phage	47.5	2.1e-68
SQF22959.1|772738_773563_-	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	91.6	1.2e-131
SQF22960.1|773721_773823_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22961.1|773919_774078_+	phage protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
SQF22962.1|774107_774707_-	phage protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
SQF22963.1|774760_774970_+	phage protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
SQF22964.1|774958_775345_-	phage protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
SQF22965.1|775418_775619_+	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQF22966.1|775728_775938_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22967.1|776068_776578_-	phage protein	NA	NA	NA	NA	NA
SQF22968.1|776632_776878_+	phage protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
SQF22969.1|776836_777046_-	phage protein	NA	NA	NA	NA	NA
SQF22970.1|777102_777240_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22971.1|777221_777440_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF22972.1|777582_777759_+	phage protein	NA	NA	NA	NA	NA
SQF22973.1|777836_778133_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
SQF22974.1|778129_778267_+	phage protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	97.8	4.9e-17
SQF22975.1|778250_778364_+	Uncharacterised protein	NA	A0A097PAT6	Streptococcus_pyogenes_phage	75.0	7.6e-08
SQF22976.1|778347_778677_+	phage protein	NA	A1EAC2	Streptococcus_phage	41.6	2.7e-13
SQF22977.1|778676_778871_+	phage protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
SQF22978.1|778867_779152_+	phage protein	NA	NA	NA	NA	NA
SQF22979.1|779148_779832_+	phage protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
SQF22980.1|779906_781271_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.1	1.9e-193
SQF22981.1|781275_781758_+	phage protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
SQF22982.1|781775_783329_+	bacteriophage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.4	4.3e-210
SQF22983.1|783606_784476_+	phage protein	NA	A0A1P8BME8	Lactococcus_phage	65.2	9.8e-103
SQF22984.1|784429_784780_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	89.4	2.6e-46
SQF22985.1|784763_785120_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	92.4	3.7e-56
SQF22986.1|785116_785296_+	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	73.0	8.4e-17
SQF22987.1|785344_786514_+	phage protein	NA	Q938J9	Temperate_phage	58.8	1.9e-61
SQF22988.1|786527_786689_+	phage protein	NA	NA	NA	NA	NA
SQF22989.1|786691_787309_+	phage protein	NA	Q938J7	Temperate_phage	89.8	5.4e-79
SQF22990.1|787318_787594_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF22991.1|787590_787818_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF22992.1|787933_789142_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	87.3	6.6e-214
SQF22993.1|789281_789806_+	phage protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
SQF22994.1|789793_790660_+	phage protein	NA	Q938J2	Temperate_phage	94.4	5.9e-124
SQF22995.1|790963_791677_+	mitogen	NA	Q938J1	Temperate_phage	59.1	2.0e-77
SQF22996.1|791958_792747_+	exotoxin M precursor	NA	Q938J1	Temperate_phage	41.4	1.2e-46
SQF22997.1|792861_793050_+	phage protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
SQF22998.1|793640_794255_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
793125:793220	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
SQF22999.1|794385_795171_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SQF23000.1|795180_795879_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
SQF23001.1|795878_796250_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF23002.1|796434_799545_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
>prophage 5
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	1035245	1090219	1746380	head,tRNA,transposase,protease	Bacillus_virus(23.08%)	52	NA	NA
SQF23224.1|1035245_1036145_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF23225.1|1036278_1036455_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF23226.1|1036572_1037481_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF23227.1|1037539_1037926_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF23228.1|1038236_1039223_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF23229.1|1039423_1039726_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23230.1|1040272_1041478_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF23231.1|1041867_1042098_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF23232.1|1042161_1043184_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF23233.1|1043306_1045730_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.2	7.7e-97
SQF23234.1|1045856_1047806_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	3.3e-122
SQF23235.1|1047940_1048582_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF23236.1|1048639_1049908_-	dihydroorotase	NA	NA	NA	NA	NA
SQF23237.1|1050039_1050693_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.1	2.3e-40
SQF23238.1|1050825_1051476_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF23239.1|1051504_1052368_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF23240.1|1052485_1053940_-	amidase	NA	NA	NA	NA	NA
SQF23241.1|1054136_1054766_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF23242.1|1054823_1055516_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF23243.1|1055792_1056329_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23244.1|1056601_1057456_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF23245.1|1057535_1058324_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF23246.1|1058316_1059030_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF23247.1|1059692_1060502_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	3.3e-52
SQF23248.1|1060485_1060926_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	5.8e-35
SQF23249.1|1060944_1062156_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF23250.1|1062232_1062916_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF23251.1|1063293_1065393_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.4	5.1e-121
SQF23252.1|1065450_1066194_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF23253.1|1066341_1066941_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF23254.1|1066950_1068180_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF23255.1|1068309_1068480_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF23256.1|1068499_1068997_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF23257.1|1069076_1069916_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF23258.1|1070124_1071300_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF23259.1|1071286_1072564_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF23260.1|1072793_1073783_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF23261.1|1073769_1074783_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF23262.1|1074775_1075720_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF23263.1|1075701_1076580_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF23264.1|1076873_1078106_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF23265.1|1078114_1078783_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF23266.1|1078785_1079436_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF23267.1|1079655_1081668_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF23268.1|1081749_1082160_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF23269.1|1083049_1084927_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
SQF23270.1|1084923_1086132_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF23271.1|1086256_1087105_-	degV family protein	NA	NA	NA	NA	NA
SQF23272.1|1087104_1087485_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF23273.1|1087713_1087890_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF23274.1|1088392_1089418_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF23275.1|1090099_1090219_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 6
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	1126588	1137191	1746380		Streptococcus_phage(57.14%)	9	NA	NA
SQF23309.1|1126588_1127731_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.0	4.1e-24
SQF23310.1|1127965_1128406_+	membrane protein	NA	NA	NA	NA	NA
SQF23311.1|1128435_1129704_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF23312.1|1129791_1131144_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.3e-29
SQF23313.1|1131364_1131706_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	1.3e-18
SQF23314.1|1131766_1132933_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF23315.1|1133026_1133713_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF23316.1|1133709_1134873_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF23317.1|1134980_1137191_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 7
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	1172591	1229839	1746380	bacteriocin,tRNA,transposase,protease	Streptococcus_phage(46.15%)	50	NA	NA
SQF23350.1|1172591_1174997_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF23351.1|1175204_1176248_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	37.7	1.0e-29
SQF23352.1|1176530_1176830_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF23353.1|1176816_1177368_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF23354.1|1177430_1177619_-	epuA protein	NA	NA	NA	NA	NA
SQF23355.1|1177622_1178894_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF23356.1|1178958_1179216_-	membrane protein	NA	NA	NA	NA	NA
SQF23357.1|1179481_1179898_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF23358.1|1179910_1181317_-	ATP synthase F0F1 subunit beta	NA	NA	NA	NA	NA
SQF23359.1|1181478_1182354_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF23360.1|1182369_1183878_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF23361.1|1183893_1184430_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF23362.1|1184429_1184924_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF23363.1|1184941_1185658_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF23364.1|1185692_1185890_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF23365.1|1186281_1187304_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF23366.1|1187317_1189276_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	5.8e-103
SQF23367.1|1190247_1192980_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF23368.1|1193551_1194670_-	ABC transporter	NA	NA	NA	NA	NA
SQF23369.1|1194666_1195794_-	ABC transporter	NA	NA	NA	NA	NA
SQF23370.1|1195802_1196726_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF23371.1|1196748_1197432_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF23372.1|1197428_1198100_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF23373.1|1198074_1199433_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF23374.1|1199452_1200511_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF23375.1|1200507_1201458_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF23376.1|1201679_1201841_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF23377.1|1202516_1203824_-	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF23378.1|1204050_1204509_+	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF23379.1|1204640_1206365_-	septation ring formation regulator	NA	NA	NA	NA	NA
SQF23380.1|1206732_1208685_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.3	1.2e-143
SQF23381.1|1208685_1209255_-	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF23382.1|1210276_1210624_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF23383.1|1210738_1211938_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.7	1.2e-93
SQF23384.1|1211993_1212278_-	chorismate mutase	NA	NA	NA	NA	NA
SQF23385.1|1212453_1212903_-	flavodoxin	NA	NA	NA	NA	NA
SQF23386.1|1213296_1214238_+	DHH family protein	NA	NA	NA	NA	NA
SQF23387.1|1214352_1214613_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF23388.1|1214709_1215909_-	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF23389.1|1215928_1216651_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF23390.1|1216800_1218348_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF23391.1|1218499_1219897_-	dipeptidase	NA	NA	NA	NA	NA
SQF23392.1|1220029_1220941_-	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.0e-105
SQF23393.1|1220937_1221915_-	transporter	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
SQF23394.1|1221911_1222802_-	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF23395.1|1223216_1224563_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF23396.1|1224583_1225777_-	aspartate aminotransferase	NA	NA	NA	NA	NA
SQF23397.1|1226111_1228571_-	helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	48.1	1.6e-203
SQF23398.1|1228716_1229175_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF23399.1|1229134_1229839_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	1338860	1370613	1746380	bacteriocin,tRNA,transposase,protease	Tupanvirus(14.29%)	36	NA	NA
SQF23505.1|1338860_1340804_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.9	2.1e-121
SQF23506.1|1341225_1342560_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF23507.1|1342561_1343560_-	glycosyltransferase	NA	NA	NA	NA	NA
SQF23508.1|1343690_1344692_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQF23509.1|1344865_1345951_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF23510.1|1345999_1346665_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF23511.1|1346675_1347053_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF23512.1|1347197_1348124_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	2.0e-77
SQF23513.1|1348334_1349018_+	membrane protein	NA	NA	NA	NA	NA
SQF23514.1|1349017_1349944_+	membrane protein	NA	NA	NA	NA	NA
SQF23515.1|1349993_1350641_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF23516.1|1350757_1351477_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF23517.1|1351482_1351950_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQF23518.1|1351952_1354286_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	6.7e-90
SQF23519.1|1354379_1354616_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF23520.1|1354804_1355926_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF23521.1|1356119_1357622_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	1.5e-74
SQF23522.1|1357811_1358405_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF23523.1|1358401_1359229_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	1.1e-15
SQF23524.1|1359400_1360267_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF23525.1|1361451_1361607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23526.1|1361954_1362401_-	histidine kinase	NA	NA	NA	NA	NA
SQF23527.1|1362445_1363513_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23528.1|1363766_1364168_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23529.1|1364346_1364643_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23530.1|1364692_1364887_-|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
SQF23531.1|1365180_1365381_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF23532.1|1365393_1365621_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF23533.1|1365939_1366446_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF23534.1|1366815_1366998_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF23535.1|1367012_1367258_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF23536.1|1367655_1367910_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23537.1|1368215_1368692_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF23538.1|1368711_1369608_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF23539.1|1369727_1370135_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF23540.1|1370115_1370613_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483338	Streptococcus pyogenes strain NCTC12064 genome assembly, chromosome: 1	1746380	1413544	1419578	1746380		Streptococcus_phage(100.0%)	8	NA	NA
SQF23579.1|1413544_1414372_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
SQF23580.1|1414445_1414802_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQF23581.1|1415100_1415730_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF23582.1|1415776_1416169_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF23583.1|1416195_1417059_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQF23584.1|1417063_1417387_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF23585.1|1418049_1418925_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
SQF23586.1|1418942_1419578_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
