assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474995.1_41906_H01	LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1	279198-279428	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas3HD,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,DEDDh,csa3	 Type I-U?,Type I-C,Type I-U	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAATA	32,31,33	2	2	279295-279328|279296-279328	LS483344.1_497038-497071|LS483344.1_497039-497071	I-C:I-C:I-C	3,3,3	3	TypeI-U?,TypeI-C,TypeI-U	cas3,cas3HD,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,DEDDh,csa3	NA,NA	NA|884aa|up_9|LS483344.1_268235_270887_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3HD|169aa|up_8|LS483344.1_271040_271547_+	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	cas3|620aa|up_7|LS483344.1_271588_273448_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|304aa|up_6|LS483344.1_273398_274310_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_5|LS483344.1_274309_276205_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_4|LS483344.1_276209_277058_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_3|LS483344.1_277059_277734_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|211aa|up_2|LS483344.1_277730_278363_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas1|139aa|up_1|LS483344.1_278328_278745_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483344.1_278755_279049_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|LS483344.1_279586_280297_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|LS483344.1_280309_280933_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|LS483344.1_280975_282082_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LS483344.1_282169_282910_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|LS483344.1_282906_284640_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|LS483344.1_284712_285792_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|LS483344.1_285814_286531_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|LS483344.1_286597_287071_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|LS483344.1_287212_287893_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|LS483344.1_288166_289402_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_900474995.1_41906_H01	LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	2	512508-512608	2	CRISPRCasFinder	no		cas3,cas3HD,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,DEDDh,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas3HD,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,DEDDh,csa3	NA|63aa|up_8|LS483344.1_502370_502559_+,NA|262aa|up_6|LS483344.1_503890_504676_-,NA	NA|267aa|up_9|LS483344.1_501332_502133_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|63aa|up_8|LS483344.1_502370_502559_+	NA	NA|205aa|up_7|LS483344.1_503149_503764_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|LS483344.1_503890_504676_-	NA	NA|225aa|up_5|LS483344.1_504685_505360_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|LS483344.1_505384_505756_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|LS483344.1_505940_509051_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|LS483344.1_509130_510144_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|LS483344.1_510206_511709_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|LS483344.1_511926_512484_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|LS483344.1_512659_514474_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|LS483344.1_514669_515005_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|LS483344.1_515111_515753_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|LS483344.1_515762_516392_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|LS483344.1_516407_517244_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|LS483344.1_517612_518386_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|LS483344.1_518755_519991_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|LS483344.1_520110_521433_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|LS483344.1_521962_524281_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|LS483344.1_524643_524892_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
