The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	174498	237635	1838787	transposase,portal,terminase,tRNA,tail,integrase	Streptococcus_pyogenes_phage(53.73%)	78	194852:194867	210268:210283
SQF35364.1|174498_175434_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
SQF35366.1|175423_176746_+	16S rRNA m(5)C 967 methyltransferase	NA	NA	NA	NA	NA
SQF35368.1|176783_177524_+	protein phosphatase 2C	NA	NA	NA	NA	NA
SQF35370.1|177520_179419_+	serine/threonine-protein kinase PrkC	NA	B5LWE2	Feldmannia_species_virus	30.7	1.4e-21
SQF35372.1|179541_180234_+	transporter	NA	NA	NA	NA	NA
SQF35374.1|180230_181235_+	histidine kinase family protein	NA	NA	NA	NA	NA
SQF35376.1|181227_181869_+	two-component response regulator	NA	NA	NA	NA	NA
SQF35378.1|181905_183306_+	cyclophilin-type protein	NA	A0A1V0S9I2	Catovirus	42.3	6.0e-25
SQF35380.1|183305_183683_+	S1 RNA binding domain-containing protein	NA	NA	NA	NA	NA
SQF35382.1|183700_184642_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	77.9	1.6e-130
SQF35384.1|184769_185402_-	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	54.3	4.2e-63
SQF35386.1|185456_186782_+	helicase conserved C-terminal domain protein	NA	A0A1X9I5S6	Streptococcus_phage	51.3	6.3e-117
SQF35388.1|186753_187419_+	comF operon protein C ComFC	NA	NA	NA	NA	NA
SQF35391.1|187498_188047_+	ribosome-associated factor Y	NA	NA	NA	NA	NA
194852:194867	attL	AAATCCCATTATAAAA	NA	NA	NA	NA
SQF35394.1|195019_195406_-|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	56.7	2.1e-25
SQF35396.1|195775_196309_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF35398.1|196388_197165_-	recX family protein	NA	NA	NA	NA	NA
SQF35400.1|197312_197705_-|integrase	phage integrase	integrase	A0A1S5SEH2	Streptococcus_phage	48.6	1.9e-13
SQF35402.1|197728_198397_-|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	47.2	8.8e-51
SQF35405.1|198570_199257_-	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SQF35407.1|199427_199580_-	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SQF35409.1|199590_199968_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQF35411.1|199951_200311_-	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQF35414.1|200499_200718_+	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQF35416.1|200812_201064_+	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
SQF35418.1|201094_201232_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
SQF35420.1|201247_201562_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	96.2	7.0e-51
SQF35423.1|201709_202192_+	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF35425.1|202192_202873_+	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF35427.1|202974_204204_+	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQF35429.1|204218_204677_+	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQF35431.1|204688_205492_+	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.3e-153
SQF35434.1|205481_206963_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.4	4.2e-295
SQF35436.1|207167_208031_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF35438.1|208176_208497_+	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SQF35440.1|208480_208837_+	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	95.8	1.8e-58
SQF35442.1|208833_209085_+	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQF35444.1|209078_209363_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
SQF35446.1|209359_209773_+	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SQF35448.1|209769_209940_+	phage protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
SQF35450.1|209936_210221_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQF35452.1|210223_210559_+	Uncharacterised protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
210268:210283	attR	TTTTATAATGGGATTT	NA	NA	NA	NA
SQF35454.1|210724_210910_+	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQF35456.1|211196_211700_+	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	98.2	2.2e-91
SQF35458.1|211696_211867_+	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQF35460.1|212151_212586_+	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
SQF35463.1|213195_213576_+	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQF35466.1|213565_214840_+|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQF35468.1|214839_216165_+|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQF35470.1|216133_217042_+	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQF35472.1|217048_217315_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQF35474.1|217464_218037_+	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
SQF35476.1|218054_218945_+	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQF35478.1|218957_219251_+	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQF35480.1|219264_219609_+	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQF35482.1|219605_219917_+	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
SQF35484.1|219925_220309_+	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQF35486.1|220310_220721_+	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQF35488.1|220732_221239_+	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQF35490.1|221251_221569_+	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQF35493.1|221541_222000_+	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	99.3	8.6e-82
SQF35495.1|221992_222361_+	phage protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	92.2	5.4e-18
SQF35497.1|222389_223799_+	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.4	2.1e-219
SQF35500.1|223799_225284_+|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
SQF35503.1|225284_228725_+	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQF35505.1|228729_230592_+	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
SQF35507.1|230602_230950_+	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQF35510.1|230963_231086_+	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	97.5	2.4e-15
SQF35512.1|231099_231423_+	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQF35514.1|231422_231755_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQF35519.1|231756_232521_+	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQF35521.1|232532_233135_+	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQF35525.1|233145_233919_+	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQF35527.1|233928_234150_+	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQF35529.1|234149_234809_+	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQF35531.1|234930_235686_-	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF35532.1|235906_236089_+	paratox	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
SQF35533.1|236279_237635_+	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	32.7	4.3e-73
>prophage 2
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	368228	427704	1838787	transposase,protease,tRNA	Bacillus_phage(21.43%)	56	NA	NA
SQF35785.1|368228_369257_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF35789.1|369458_370163_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF35791.1|370281_370998_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF35795.1|371292_372255_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF35798.1|372267_374073_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF35802.1|374448_375645_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF35804.1|375746_376418_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	1.9e-08
SQF35806.1|376480_377536_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF35809.1|377922_380541_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	5.1e-62
SQF35813.1|380894_381116_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF35815.1|381112_381874_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF35817.1|381892_382588_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF35819.1|382685_383111_-	Transposase	NA	A0A1P8CWQ3	Bacillus_phage	44.1	2.5e-27
SQF35821.1|383589_383835_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF35823.1|383930_385244_-	chloride channel protein	NA	NA	NA	NA	NA
SQF35826.1|385218_386178_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
SQF35828.1|386381_388541_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	4.7e-263
SQF35831.1|388560_388779_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF35834.1|389171_389435_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF35836.1|389439_391173_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF35838.1|391357_392785_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF35840.1|392878_394024_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF35842.1|394042_394153_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF35844.1|394263_395349_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
SQF35846.1|395446_396073_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF35848.1|396152_396416_+	membrane protein	NA	NA	NA	NA	NA
SQF35851.1|396468_397278_-	membrane protein	NA	NA	NA	NA	NA
SQF35853.1|397422_397920_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF35855.1|397919_399590_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.6e-47
SQF35862.1|399852_400794_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQF35864.1|400997_403376_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF35866.1|403912_405109_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	9.9e-138
SQF35868.1|405282_406542_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF35870.1|406899_407805_+	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQF35872.1|408042_408585_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF35874.1|408593_409283_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF35876.1|409308_409878_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF35878.1|409892_410753_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF35880.1|410754_411720_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF35882.1|411830_413114_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF35884.1|413106_413598_+	shikimate kinase	NA	NA	NA	NA	NA
SQF35886.1|413805_415257_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF35888.1|415338_416694_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.0	3.1e-252
SQF35890.1|416732_416843_+	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
SQF35892.1|417001_417514_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	95.9	9.6e-90
SQF35894.1|417598_418000_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF35896.1|418104_419589_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF35898.1|419962_421183_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF35900.1|421302_421668_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF35902.1|421782_422514_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF35904.1|422530_422854_-|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	46.9	6.1e-18
SQF35906.1|423332_423578_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF35908.1|423655_424966_-	membrane protein	NA	NA	NA	NA	NA
SQF35910.1|425189_426062_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF35912.1|426361_427168_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	8.3e-64
SQF35914.1|427188_427704_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	443408	503764	1838787	transposase,portal,terminase,head,holin,tail,integrase	Streptococcus_phage(43.33%)	84	462328:462387	502652:502729
SQF35946.1|443408_444272_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF35948.1|444508_444652_+	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF35951.1|444663_446202_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.1	3.5e-42
SQF35953.1|446198_447455_+	Protein dltB	NA	NA	NA	NA	NA
SQF35955.1|447472_447712_+	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF35957.1|447704_448955_+	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF35960.1|448985_449969_+	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF35962.1|450482_450866_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.5	5.1e-19
SQF35964.1|450862_451069_-|transposase	truncated transposase	transposase	NA	NA	NA	NA
SQF35967.1|451442_452279_-	maltose transport system permease	NA	NA	NA	NA	NA
SQF35968.1|452278_453640_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
SQF35970.1|453913_455161_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
SQF35972.1|455270_456134_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF35974.1|456373_457390_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.5	3.7e-16
SQF35976.1|457504_458998_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
SQF35978.1|459032_461297_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
SQF35980.1|461553_462174_-	phage protein	NA	NA	NA	NA	NA
462328:462387	attL	AAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATT	NA	NA	NA	NA
SQF35982.1|462447_463536_-|integrase	integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.4	4.2e-204
SQF35984.1|463785_464595_-	phage protein	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
SQF35986.1|464607_465444_-	phage transcriptional repressor	NA	A0A097PBE5	Streptococcus_pyogenes_phage	88.0	1.8e-125
SQF35988.1|465602_465704_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF35990.1|465799_465958_+	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	3.4e-22
SQF35992.1|465993_466128_+	Uncharacterised protein	NA	X2KTZ3	Streptococcus_phage	79.5	3.4e-07
SQF35994.1|466085_466769_-	phage protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
SQF35996.1|466866_467067_+	helix-turn-helix family protein	NA	A0A141E205	Streptococcus_phage	59.6	2.7e-08
SQF35997.1|467176_467386_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF35999.1|467572_467779_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36000.1|467798_467930_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36001.1|467915_468134_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36002.1|468277_468463_+	phage protein	NA	J7KH19	Streptococcus_phage	68.9	4.6e-18
SQF36003.1|468540_468837_+	phage protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	84.7	2.3e-43
SQF36004.1|468833_468968_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF36005.1|468983_469298_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
SQF36006.1|469311_470214_+	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	87.5	3.0e-118
SQF36007.1|470306_471065_+	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	42.4	1.3e-47
SQF36008.1|471064_471202_+	phage protein	NA	J7KBQ4	Streptococcus_phage	75.7	3.5e-07
SQF36009.1|471212_471569_+	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	99.2	3.0e-50
SQF36010.1|471549_471804_+	phage protein	NA	Q938N0	Temperate_phage	97.6	1.8e-41
SQF36011.1|471824_472307_+	phage protein	NA	Q938M9	Temperate_phage	98.8	1.6e-49
SQF36012.1|472307_472982_+	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	97.3	2.0e-103
SQF36013.1|472974_473394_+	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	97.1	3.1e-70
SQF36015.1|473602_474043_+	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQF36016.1|474039_474396_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	97.5	2.1e-59
SQF36017.1|474392_474638_+	phage protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	93.8	4.8e-39
SQF36018.1|474637_474925_+	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQF36020.1|474908_475322_+	phage protein	NA	Q938M1	Temperate_phage	62.4	4.6e-34
SQF36021.1|475318_475489_+	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
SQF36022.1|475485_475770_+	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
SQF36023.1|475774_475975_+	Uncharacterised protein	NA	A0A0E3T873	Gordonia_phage	45.3	4.6e-08
SQF36024.1|475987_476389_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36025.1|476388_477024_+	phage protein	NA	L0P368	Streptococcus_phage	67.9	5.5e-87
SQF36026.1|477294_477735_+	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	97.3	7.2e-78
SQF36028.1|478303_478735_+|terminase	phage terminase small subunit	terminase	A0A1S5SCD2	Streptococcus_phage	72.6	1.8e-49
SQF36029.1|478712_480020_+|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.2	5.9e-184
SQF36030.1|480031_481534_+|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.3	4.1e-141
SQF36031.1|481514_483140_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	U6E9F1	Streptococcus_phage	43.8	1.1e-46
SQF36032.1|483130_483310_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36034.1|483369_483636_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	84.1	1.7e-34
SQF36035.1|483770_484304_+	phage protein	NA	A0A141E0S7	Streptococcus_phage	83.9	1.4e-14
SQF36036.1|484313_484694_+	structural protein	NA	A0A0K2CNR0	Brevibacillus_phage	37.1	5.8e-07
SQF36037.1|484693_485770_+|head	phage head protein	head	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
SQF36039.1|485779_486022_+	phage protein	NA	NA	NA	NA	NA
SQF36040.1|486035_486389_+	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF36041.1|486385_486694_+	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
SQF36042.1|486674_487040_+	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
SQF36044.1|487036_487426_+	phage protein	NA	Q38611	Lactococcus_phage	68.2	3.5e-44
SQF36045.1|487435_488083_+|tail	phage major tail protein	tail	D7RWD5	Brochothrix_phage	52.0	1.4e-40
SQF36046.1|488135_488495_+	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	4.3e-20
SQF36047.1|488536_488866_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQF36048.1|488880_492147_+	tape measure domain protein	NA	U6E979	Streptococcus_phage	30.4	1.6e-04
SQF36050.1|492178_492958_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.5	1.9e-68
SQF36051.1|492954_495006_+	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQF36052.1|495002_496010_+	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	71.7	1.4e-137
SQF36054.1|496022_497933_+	phage infection protein	NA	Q938J9	Temperate_phage	67.8	1.3e-120
SQF36055.1|497946_498108_+	phage protein	NA	NA	NA	NA	NA
SQF36056.1|498110_498728_+	phage protein	NA	Q938J7	Temperate_phage	89.3	2.7e-78
SQF36057.1|498737_499013_+|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF36058.1|499009_499237_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF36060.1|499245_499356_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	94.4	3.0e-09
SQF36061.1|499352_500558_+	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	84.3	1.7e-206
SQF36062.1|500627_501062_-	phage membrane protein	NA	NA	NA	NA	NA
SQF36063.1|501332_502133_-	streptodornase	NA	NA	NA	NA	NA
SQF36064.1|502370_502559_+	paratox	NA	A3F673	Streptococcus_phage	83.1	1.3e-20
SQF36066.1|503149_503764_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
502652:502729	attR	AAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCCGGTGGGAGT	NA	NA	NA	NA
>prophage 4
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	718239	772576	1838787	portal,terminase,protease,tail,integrase	Streptococcus_phage(80.39%)	68	729558:729606	769804:769852
SQF36450.1|718239_718566_-|protease	protease	protease	NA	NA	NA	NA
SQF36451.1|718595_719381_-	acetyl esterase	NA	NA	NA	NA	NA
SQF36453.1|719513_721175_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQF36454.1|721378_722137_-	spermidine/putrescine import ATP-binding protein potA	NA	W5SAS9	Pithovirus	28.5	1.0e-10
SQF36456.1|722133_723003_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQF36458.1|723178_723343_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36460.1|723347_724346_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF36462.1|724699_726352_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQF36464.1|726410_727658_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQF36466.1|727647_728829_-	permease	NA	NA	NA	NA	NA
SQF36468.1|728886_729363_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
729558:729606	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQF36470.1|729966_730677_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQF36471.1|730702_731482_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.3	4.6e-27
SQF36473.1|731646_732399_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.8	1.0e-140
SQF36474.1|732400_732733_-	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	98.2	2.8e-50
SQF36476.1|732745_733066_-	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.1	1.2e-50
SQF36478.1|733076_733688_-	phage protein	NA	Q938J7	Temperate_phage	91.1	8.8e-82
SQF36479.1|733690_733852_-	phage protein	NA	NA	NA	NA	NA
SQF36481.1|733860_735879_-	Phage infection protein	NA	Q938J9	Temperate_phage	58.8	3.9e-126
SQF36483.1|735888_736998_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	71.3	1.3e-120
SQF36485.1|736997_738980_-	phage protein	NA	A7J2A7	Streptococcus_phage	93.9	0.0e+00
SQF36486.1|738989_739832_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.5	3.9e-157
SQF36488.1|739843_744226_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.0	1.3e-224
SQF36490.1|744240_744474_-	phage protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
SQF36492.1|744548_745004_-	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	1.2e-75
SQF36494.1|745057_745657_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF36497.1|745668_746028_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF36499.1|746031_746376_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF36500.1|746372_746651_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF36502.1|746661_747018_-	phage protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
SQF36504.1|747029_747917_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF36506.1|747929_748499_-	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQF36508.1|748666_748933_-	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQF36510.1|748937_749054_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF36512.1|749153_750602_-	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQF36514.1|750561_752094_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQF36516.1|752109_753387_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	3.1e-246
SQF36518.1|753376_753829_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF36520.1|753918_754335_-	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF36522.1|754318_754465_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36523.1|754467_754740_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF36524.1|754732_754903_-	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQF36525.1|754903_756226_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	5.1e-252
SQF36526.1|756222_756498_-	phage protein	NA	A7J283	Streptococcus_phage	97.8	7.7e-46
SQF36527.1|756883_759268_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	4.8e-277
SQF36528.1|759272_761195_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQF36529.1|761237_761795_-	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF36531.1|761809_762967_-	phage protein	NA	A7J278	Streptococcus_phage	97.9	8.8e-216
SQF36533.1|762966_763266_-	phage protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
SQF36535.1|763354_763558_-	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQF36537.1|763554_763905_-	phage protein	NA	NA	NA	NA	NA
SQF36539.1|763914_764052_-	phage protein	NA	NA	NA	NA	NA
SQF36541.1|764048_764435_-	phage protein	NA	A7J274	Streptococcus_phage	89.0	3.3e-58
SQF36543.1|764431_764635_-	phage protein	NA	NA	NA	NA	NA
SQF36544.1|764627_764798_-	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQF36546.1|764799_765111_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	80.4	8.2e-44
SQF36548.1|765188_765374_-	phage regulatory protein	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
SQF36549.1|765540_765780_+	phage protein	NA	NA	NA	NA	NA
SQF36551.1|765921_766728_+	protein Ymh	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
SQF36553.1|766662_766929_-	phage protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
SQF36555.1|766939_767155_-	phage protein	NA	M1Q1B4	Streptococcus_phage	79.7	1.2e-25
SQF36557.1|767462_767813_+	DNA-binding phage protein	NA	C5J980	Streptococcus_phage	62.6	1.1e-33
SQF36559.1|767815_768202_+	phage protein	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
SQF36561.1|768213_768480_+	phage protein	NA	NA	NA	NA	NA
SQF36563.1|768607_769747_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQF36564.1|769829_770870_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
769804:769852	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQF36565.1|771113_771707_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQF36566.1|771706_772576_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
>prophage 5
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	783254	839768	1838787	transposase,protease,tRNA,head	Bacillus_virus(21.43%)	54	NA	NA
SQF36606.1|783254_784154_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF36608.1|784287_784464_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF36610.1|784581_785505_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF36612.1|785742_786162_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF36614.1|786472_787459_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF36616.1|787659_787962_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36617.1|788508_789714_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF36619.1|790104_790335_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF36621.1|790398_791421_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF36623.1|791543_793967_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	32.9	1.5e-95
SQF36625.1|794199_795018_-	phosphate ABC transporter ATPase	NA	NA	NA	NA	NA
SQF36627.1|795084_797034_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	1.9e-122
SQF36629.1|797168_797810_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF36631.1|797867_799136_-	dihydroorotase	NA	NA	NA	NA	NA
SQF36633.1|799293_799947_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.5	3.1e-40
SQF36635.1|800178_801180_+|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.1e-32
SQF36637.1|801165_801816_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF36638.1|801844_802708_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF36640.1|802825_804280_-	amidase	NA	NA	NA	NA	NA
SQF36642.1|804476_805106_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF36644.1|805163_805856_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF36646.1|806131_806668_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36648.1|806940_807795_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF36650.1|807873_808662_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF36652.1|808654_809368_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF36654.1|810030_810840_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	1.5e-52
SQF36656.1|810823_811264_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	53.8	2.9e-34
SQF36658.1|811282_812494_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF36660.1|812570_813254_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF36662.1|813631_815731_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	4.3e-120
SQF36664.1|815788_816532_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF36666.1|816679_817279_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF36668.1|817288_818518_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.0	2.1e-135
SQF36670.1|818647_818818_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF36672.1|818837_819335_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
SQF36674.1|819414_820254_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF36676.1|820474_821650_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF36678.1|821636_822914_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF36680.1|823143_824133_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF36682.1|824119_825133_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF36684.1|825125_826070_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF36686.1|826051_826930_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF36688.1|827223_828456_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF36690.1|828464_829133_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF36692.1|829135_829732_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF36693.1|830005_830572_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF36695.1|830622_832017_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF36697.1|832097_832508_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF36699.1|833399_835277_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	8.7e-64
SQF36701.1|835273_836482_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQF36703.1|836606_837455_-	degV family protein	NA	NA	NA	NA	NA
SQF36705.1|837454_837835_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF36706.1|838062_838239_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF36708.1|838742_839768_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
>prophage 6
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	878869	889472	1838787		Streptococcus_phage(57.14%)	9	NA	NA
SQF36756.1|878869_880012_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
SQF36757.1|880246_880687_+	membrane protein	NA	NA	NA	NA	NA
SQF36758.1|880716_881985_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF36759.1|882072_883425_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.2	7.0e-31
SQF36760.1|883645_883987_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF36761.1|884047_885214_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF36762.1|885307_885994_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF36763.1|885990_887154_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF36764.1|887261_889472_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	8.5e-268
>prophage 7
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	924882	975605	1838787	transposase,protease,tRNA,bacteriocin	Streptococcus_phage(30.0%)	45	NA	NA
SQF36797.1|924882_927288_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF36798.1|927497_928541_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
SQF36799.1|928823_929363_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF36800.1|929398_929587_-	epuA protein	NA	NA	NA	NA	NA
SQF36801.1|929590_930862_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF36802.1|930926_931184_-	membrane protein	NA	NA	NA	NA	NA
SQF36803.1|931449_931866_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF36804.1|931878_933285_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF36805.1|933446_934322_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF36806.1|934337_935846_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF36807.1|935861_936398_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF36808.1|936397_936892_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF36809.1|936909_937626_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF36810.1|937660_937858_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF36811.1|938249_939272_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF36812.1|939285_941244_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	9.9e-103
SQF36813.1|942215_944948_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF36814.1|945519_946638_-	ABC transporter	NA	NA	NA	NA	NA
SQF36815.1|946634_947762_-	ABC transporter	NA	NA	NA	NA	NA
SQF36816.1|947770_948694_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF36817.1|948716_949400_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF36818.1|949396_950068_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF36819.1|950042_951401_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF36820.1|951420_952479_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF36821.1|952475_953426_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF36822.1|953647_953809_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF36823.1|954579_955887_-	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF36824.1|956119_956578_+	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF36825.1|956709_958434_-	septation ring formation regulator	NA	NA	NA	NA	NA
SQF36826.1|958801_960754_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.2	8.9e-144
SQF36827.1|960754_961324_-	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF36828.1|962338_962686_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF36829.1|962800_964063_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.3	1.2e-93
SQF36830.1|964055_964340_-	chorismate mutase	NA	NA	NA	NA	NA
SQF36831.1|964514_964964_-	flavodoxin	NA	NA	NA	NA	NA
SQF36832.1|965357_966299_+	DHH family protein	NA	NA	NA	NA	NA
SQF36833.1|966413_966674_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF36834.1|966770_967970_-	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF36835.1|967989_968712_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF36836.1|968862_970410_-	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF36837.1|970560_971979_-	dipeptidase	NA	NA	NA	NA	NA
SQF36838.1|972811_973465_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.0	4.0e-24
SQF36839.1|973685_973907_-	hupothetical protein	NA	NA	NA	NA	NA
SQF36840.1|973911_975045_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF36841.1|975221_975605_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.7	3.9e-19
>prophage 8
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	1091368	1123151	1838787	transposase,protease,tRNA,bacteriocin	Tupanvirus(14.29%)	37	NA	NA
SQF36956.1|1091368_1093312_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.4e-120
SQF36957.1|1093733_1095068_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF36958.1|1095069_1096068_-	glycosyltransferase	NA	NA	NA	NA	NA
SQF36959.1|1096198_1097200_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.2	8.9e-23
SQF36960.1|1097373_1098459_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF36961.1|1098507_1099173_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF36962.1|1099183_1099561_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF36963.1|1099705_1100632_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.2	4.4e-77
SQF36964.1|1100842_1101526_+	membrane protein	NA	NA	NA	NA	NA
SQF36965.1|1101525_1102452_+	membrane protein	NA	NA	NA	NA	NA
SQF36966.1|1102501_1103149_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF36967.1|1103264_1103984_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF36968.1|1103989_1104457_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	7.5e-41
SQF36969.1|1104459_1106790_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	5.2e-90
SQF36970.1|1106886_1107123_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF36971.1|1107311_1108505_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF36972.1|1108626_1110129_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	4.4e-74
SQF36973.1|1110318_1110912_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF36974.1|1110908_1111736_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	2.3e-16
SQF36975.1|1111907_1112774_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF36976.1|1113271_1113451_+	SLH, S-layer homology domain W	NA	NA	NA	NA	NA
SQF36977.1|1113845_1114115_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36978.1|1114462_1114861_-	histidine kinase	NA	NA	NA	NA	NA
SQF36979.1|1114953_1116021_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36980.1|1116274_1116676_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36981.1|1116854_1117151_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36982.1|1117689_1117890_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF36983.1|1117902_1118130_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF36984.1|1118447_1118870_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF36985.1|1118866_1119016_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF36986.1|1119353_1119536_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF36987.1|1119550_1119796_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF36988.1|1120193_1120448_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF36989.1|1120753_1121230_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF36990.1|1121249_1122146_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF36991.1|1122265_1122673_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF36992.1|1122653_1123151_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	1169003	1175035	1838787		Streptococcus_phage(100.0%)	9	NA	NA
SQF37035.1|1169003_1169831_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.3	5.8e-129
SQF37036.1|1169904_1170261_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
SQF37037.1|1170558_1171188_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF37038.1|1171234_1171627_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF37039.1|1171653_1172517_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.3	1.9e-114
SQF37040.1|1172521_1172845_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF37041.1|1173248_1173488_-	Tpl protein	NA	NA	NA	NA	NA
SQF37042.1|1173506_1174382_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	3.6e-68
SQF37043.1|1174399_1175035_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
>prophage 10
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	1535714	1546832	1838787	transposase	Synechococcus_phage(33.33%)	7	NA	NA
SQF37385.1|1535714_1536839_+	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF37386.1|1536934_1537798_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF37387.1|1537867_1539415_-	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.3	3.4e-45
SQF37388.1|1539598_1540153_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	2.6e-24
SQF37389.1|1540320_1541343_-	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	42.0	1.4e-63
SQF37390.1|1541370_1542825_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF37391.1|1543058_1546832_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	3.0e-39
>prophage 11
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	1604222	1668373	1838787	transposase,protease,tRNA,bacteriocin	Streptococcus_phage(16.67%)	52	NA	NA
SQF37428.1|1604222_1605566_-|tRNA	cysteinyl-tRNA synthetase	tRNA	A0A1V0SAQ2	Catovirus	30.1	8.5e-53
SQF37429.1|1605593_1605824_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF37430.1|1606302_1606884_-	serine acetyl transferase	NA	NA	NA	NA	NA
SQF37431.1|1606892_1607645_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA	NA
SQF37432.1|1610049_1610778_-	translaldolase	NA	H8ZNI7	Synechococcus_phage	33.0	8.4e-15
SQF37433.1|1610790_1612170_-	PTS system ascorbate-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF37434.1|1612196_1612481_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQF37435.1|1612473_1614534_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF37436.1|1614885_1615155_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQF37437.1|1615330_1615531_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF37438.1|1616039_1616654_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	38.9	1.3e-13
SQF37439.1|1616687_1617230_-	oxidoreductase	NA	NA	NA	NA	NA
SQF37440.1|1617359_1617788_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SQF37441.1|1617897_1622295_-	DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	1.7e-17
SQF37442.1|1622548_1624405_-|tRNA	prolyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	24.6	4.1e-05
SQF37443.1|1624602_1625862_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQF37444.1|1625934_1626729_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQF37445.1|1626741_1627491_-	undecaprenyl pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.7	9.6e-22
SQF37446.1|1627719_1627941_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
SQF37447.1|1628200_1628548_-|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
SQF37448.1|1628689_1632187_-	pullulanase	NA	NA	NA	NA	NA
SQF37449.1|1632576_1634184_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
SQF37450.1|1634312_1635446_-	Multiple sugar-binding transport ATP-binding protein msmK	NA	G3M9Y6	Bacillus_virus	32.9	4.8e-25
SQF37451.1|1635743_1636592_-	leucine rich protein	NA	NA	NA	NA	NA
SQF37452.1|1636951_1638274_+	streptokinase C	NA	NA	NA	NA	NA
SQF37453.1|1638371_1638815_-|tRNA	D-tyrosyl-tRNA deacylase	tRNA	NA	NA	NA	NA
SQF37454.1|1638829_1641049_-	GTP pyrophosphokinase	NA	A0A1S6L1R3	Vibrio_phage	36.9	1.5e-06
SQF37455.1|1641300_1641576_-	collagen-like protein	NA	NA	NA	NA	NA
SQF37456.1|1641726_1642146_-	collagen-like protein	NA	NA	NA	NA	NA
SQF37457.1|1642546_1643680_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF37458.1|1643684_1643819_+	hupothetical protein	NA	NA	NA	NA	NA
SQF37459.1|1643853_1644336_+	nrdI Flavodoxin like family protein	NA	NA	NA	NA	NA
SQF37460.1|1644730_1645408_-	putative RgfB protein	NA	NA	NA	NA	NA
SQF37461.1|1645776_1647534_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	A0A0B5J984	Pandoravirus	30.1	1.2e-38
SQF37462.1|1647566_1648133_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	4.5e-32
SQF37463.1|1648165_1649434_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	46.9	4.5e-96
SQF37464.1|1649932_1650373_+	acetyltransferase	NA	NA	NA	NA	NA
SQF37465.1|1650427_1650898_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	42.3	2.1e-27
SQF37466.1|1651182_1651884_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	36.2	7.3e-16
SQF37467.1|1652210_1652435_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQF37468.1|1652613_1654242_+	Glutathione-binding protein gsiB	NA	NA	NA	NA	NA
SQF37469.1|1654354_1655332_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA	NA
SQF37470.1|1655328_1656150_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA	NA
SQF37471.1|1656161_1656965_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	6.5e-08
SQF37472.1|1656948_1657575_+	Dipeptide transport ATP-binding protein dppF	NA	A0A2H4P6Z4	Pseudomonas_phage	26.1	1.0e-05
SQF37473.1|1657657_1657858_-	CsbD-like protein	NA	J7KJ36	Streptococcus_phage	86.4	1.3e-21
SQF37474.1|1658026_1660498_-	histidine triad protein	NA	NA	NA	NA	NA
SQF37475.1|1660510_1661431_-	Laminin-binding surface protein	NA	NA	NA	NA	NA
SQF37476.1|1661608_1662742_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF37477.1|1662992_1666496_-	C5A peptidase	NA	NA	NA	NA	NA
SQF37478.1|1666929_1667589_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
SQF37479.1|1667566_1668373_+|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.6	3.9e-130
>prophage 12
LS483344	Streptococcus pyogenes strain NCTC12840 genome assembly, chromosome: 1	1838787	1762711	1778430	1838787	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQF37560.1|1762711_1763503_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQF37561.1|1763594_1763828_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF37562.1|1763882_1764290_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQF37563.1|1764303_1764921_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQF37564.1|1765154_1765496_+	phage protein	NA	NA	NA	NA	NA
SQF37565.1|1765482_1765704_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF37566.1|1765706_1765898_+	phage protein	NA	NA	NA	NA	NA
SQF37567.1|1765909_1766239_+	phage protein	NA	NA	NA	NA	NA
SQF37568.1|1766241_1766514_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF37569.1|1766514_1767372_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
SQF37570.1|1767340_1769029_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
SQF37571.1|1769315_1769489_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF37572.1|1769494_1769668_+	phage protein	NA	NA	NA	NA	NA
SQF37573.1|1769669_1770179_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF37574.1|1770252_1770741_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF37575.1|1771139_1771502_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	1.3e-05
SQF37576.1|1771476_1771860_+	phage protein	NA	Q938L8	Temperate_phage	41.7	3.7e-14
SQF37577.1|1772060_1772723_+	secreted phage protein	NA	NA	NA	NA	NA
SQF37578.1|1773119_1775675_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	3.0e-43
SQF37579.1|1775661_1775868_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQF37580.1|1776010_1776448_-	arginine repressor	NA	NA	NA	NA	NA
SQF37581.1|1776738_1778430_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	7.1e-73
