The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	4289	66107	2102271	integrase,transposase,tRNA	Streptococcus_phage(26.92%)	57	NA	NA
SQF23880.1|4289_4859_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SQF23881.1|4851_8358_+	transcription-repair coupling factor	NA	A0A068EU29	Bacillus_phage	33.9	1.6e-05
SQF23882.1|8543_8819_+	ribosome-associated heat shock protein	NA	NA	NA	NA	NA
SQF23883.1|8802_9174_+	putative cell-cycle protein, MesJ/Ycf62 family	NA	NA	NA	NA	NA
SQF23884.1|9173_9305_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23885.1|9301_10594_+	beta-lactamase class A	NA	NA	NA	NA	NA
SQF23886.1|10593_11859_+	cell-cycle protein MesJ/Ycf62 family	NA	NA	NA	NA	NA
SQF23887.1|11940_12483_+	hypoxanthine-guanine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	26.8	4.4e-08
SQF23888.1|12498_14466_+	cell division protein FtsH	NA	C7U047	Ostreococcus_tauri_virus	43.8	7.4e-114
SQF23889.1|14508_15408_-|transposase	transposase, IS204/IS1001/IS1096/IS1165	transposase	A0A1S5SBP9	Streptococcus_phage	70.5	4.5e-119
SQF23890.1|15864_16149_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF23891.1|16210_16498_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF23892.1|16606_17215_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	48.7	2.2e-40
SQF23893.1|24065_24896_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SQF23894.1|24897_25422_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQF23895.1|25506_26931_+	Glucan binding protein	NA	M4I0L3	Staphylococcus_phage	38.7	3.7e-06
SQF23896.1|27144_28110_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.8	1.3e-42
SQF23897.1|28575_28767_-|transposase	truncated IS1193 transposase	transposase	NA	NA	NA	NA
SQF23898.1|29216_30392_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
SQF23899.1|30378_31152_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SQF23900.1|31367_32372_+	fatty acid/phospholipid synthesis protein PlsX	NA	NA	NA	NA	NA
SQF23901.1|32371_32617_+	acyl carrier protein	NA	NA	NA	NA	NA
SQF23902.1|32901_33609_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	40.1	1.8e-41
SQF23903.1|33664_37390_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	26.1	4.8e-37
SQF23904.1|37558_38998_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	3.6e-57
SQF23905.1|39168_40191_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	44.0	1.6e-64
SQF23906.1|40190_40745_+	phosphoribosylglycinamide (GAR) formyltransferase	NA	M4QRX9	Synechococcus_phage	36.9	2.4e-25
SQF23907.1|40813_42361_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	48.9	7.4e-77
SQF23908.1|42532_42991_+|transposase	IS861, transposase (orf1), IS3 family, truncated	transposase	NA	NA	NA	NA
SQF23909.1|43158_43473_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	54.8	9.9e-13
SQF23910.1|43436_43655_+|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.3	7.6e-12
SQF23911.1|43760_44600_-	CHAP domain protein	NA	NA	NA	NA	NA
SQF23912.1|44907_46170_+	phosphoribosylglycinamide synthetase	NA	NA	NA	NA	NA
SQF23913.1|46539_47004_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.8	1.3e-16
SQF23914.1|46990_48082_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQF23915.1|48274_49030_+	ketopantoate reductase ApbA/PanE domain-containing protein	NA	NA	NA	NA	NA
SQF23916.1|49038_49266_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQF23917.1|49544_50843_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.5	5.0e-18
SQF23918.1|51705_53397_-|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.9	1.1e-76
SQF23919.1|53603_54770_-|integrase	integrase/recombinase	integrase	A0A1X9I5Y5	Streptococcus_phage	68.3	1.2e-151
SQF23920.1|54911_55493_-	DNA-binding phage protein	NA	A0A1S5SE31	Streptococcus_phage	50.8	2.3e-07
SQF23921.1|55642_55813_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF23922.1|56065_56359_+	cytosolic protein	NA	NA	NA	NA	NA
SQF23923.1|56362_56557_+	phage membrane protein	NA	NA	NA	NA	NA
SQF23924.1|56570_56807_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23925.1|56823_57006_+	phage related protein	NA	NA	NA	NA	NA
SQF23926.1|57142_57415_+	phage related protein	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.4e-18
SQF23927.1|57429_58290_+	phage related protein	NA	A0A1X9I6L2	Streptococcus_phage	65.0	1.1e-106
SQF23928.1|58279_59785_+	phage DNA polymerase	NA	Q9AZI5	Lactococcus_phage	36.8	2.5e-61
SQF23929.1|59953_60085_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23930.1|60081_60267_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23931.1|60332_60560_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	43.3	1.8e-08
SQF23932.1|61040_61229_+	phage protein	NA	A3F673	Streptococcus_phage	56.9	1.7e-12
SQF23933.1|61609_62299_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF23934.1|62771_63197_+	arginine repressor ArgR	NA	NA	NA	NA	NA
SQF23935.1|63196_63556_+	membrane protein	NA	NA	NA	NA	NA
SQF23936.1|63548_66107_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.2	3.0e-43
>prophage 2
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	131940	202914	2102271	bacteriocin,transposase,tRNA,protease	Streptococcus_phage(40.0%)	60	NA	NA
SQF24002.1|131940_132687_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SQF24003.1|132679_133441_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQF24004.1|133430_133901_+	integral membrane protein	NA	NA	NA	NA	NA
SQF24005.1|139400_140609_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.1	4.5e-114
SQF24006.1|141790_142288_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF24007.1|142387_143230_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
SQF24008.1|143371_144655_+	trigger factor	NA	NA	NA	NA	NA
SQF24009.1|144812_145388_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
SQF24010.1|145638_147243_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	46.2	6.6e-137
SQF24011.1|147337_147808_+	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA	NA
SQF24012.1|147823_147991_+	mutT/nudix family protein	NA	NA	NA	NA	NA
SQF24013.1|148131_148299_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24014.1|148301_149120_+	Replication initiator protein A (RepA) N-terminus	NA	A0A286QNA4	Streptococcus_phage	35.5	4.9e-11
SQF24015.1|149268_150624_+	DNA-cytosine methyltransferase	NA	A0A141E1L1	Streptococcus_phage	55.9	4.0e-127
SQF24016.1|150607_151036_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24017.1|151046_151430_+	arsenate reductase	NA	NA	NA	NA	NA
SQF24018.1|151438_151672_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24019.1|151674_152259_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF24020.1|152335_152824_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24021.1|152823_154641_+	conjugal transfer coupling protein TraG	NA	NA	NA	NA	NA
SQF24022.1|154658_154901_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24023.1|154919_155774_+	Tn5252, Orf23	NA	NA	NA	NA	NA
SQF24024.1|155835_156189_+	PrgI family protein	NA	NA	NA	NA	NA
SQF24025.1|156145_158497_+	Tn5252 Orf26	NA	NA	NA	NA	NA
SQF24026.1|158498_161300_+	CHAP protein	NA	A0A076G4W5	Staphylococcus_phage	35.7	2.3e-07
SQF24027.1|161386_162232_-	Abortive infection protein AbiGII	NA	NA	NA	NA	NA
SQF24028.1|162228_162819_-	abortive infection system Abi protein	NA	NA	NA	NA	NA
SQF24029.1|163099_167995_+	agglutinin receptor	NA	NA	NA	NA	NA
SQF24030.1|167995_168187_+	calcium-binding protein, putative	NA	NA	NA	NA	NA
SQF24031.1|168170_168722_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24032.1|168770_174233_+	SNF2 family protein	NA	A0A248SL14	Klebsiella_phage	31.2	1.1e-151
SQF24033.1|174730_176509_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.3	3.1e-26
SQF24034.1|176646_177990_+	SNF2 family protein	NA	H2DE57	Erwinia_phage	32.0	5.7e-57
SQF24035.1|178060_178360_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24036.1|178373_178664_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24037.1|178957_180580_+	putative ABC-type multidrug transport system, ATPase component	NA	NA	NA	NA	NA
SQF24038.1|180576_181905_+	HNH endonuclease	NA	NA	NA	NA	NA
SQF24039.1|182167_182806_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24040.1|182845_183022_+	DNA primase (type)	NA	NA	NA	NA	NA
SQF24041.1|183018_183921_+	DNA primase (bacterial type)	NA	NA	NA	NA	NA
SQF24042.1|183974_184202_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24043.1|184198_184588_+	glutamate-cysteine ligase	NA	NA	NA	NA	NA
SQF24044.1|184634_184925_+	ATPases with chaperone activity, ATP-binding subunit	NA	NA	NA	NA	NA
SQF24045.1|185060_187058_+	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	79.9	1.5e-223
SQF24046.1|187057_187834_+	Signal recognition particle GTPase	NA	NA	NA	NA	NA
SQF24047.1|187817_188627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24048.1|188623_191707_+	DEAD-DEAH box helicase domain-containing protein	NA	NA	NA	NA	NA
SQF24049.1|191818_192628_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24050.1|192968_193331_+	Tn5252 ORF10	NA	NA	NA	NA	NA
SQF24051.1|193333_193699_+	Tn5252 ORF9	NA	NA	NA	NA	NA
SQF24052.1|193685_195569_+	relaxase	NA	NA	NA	NA	NA
SQF24053.1|195501_195897_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24054.1|196095_196437_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
SQF24055.1|196438_197179_+	response regulator	NA	NA	NA	NA	NA
SQF24056.1|197189_198530_+	sensor histidine kinase	NA	NA	NA	NA	NA
SQF24057.1|198577_198733_-|bacteriocin	bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
SQF24058.1|198831_200193_-	BlpC ABC transporter	NA	NA	NA	NA	NA
SQF24059.1|200204_202178_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	W8CYL7	Bacillus_phage	27.2	1.2e-42
SQF24060.1|202167_202359_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF24061.1|202656_202914_+|bacteriocin	bacteriocin subunit	bacteriocin	NA	NA	NA	NA
>prophage 3
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	263532	308146	2102271	transposase,tRNA,protease	Staphylococcus_phage(22.22%)	44	NA	NA
SQF24137.1|263532_264795_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
SQF24138.1|264880_266728_+|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF24139.1|267343_269284_+	ABC transporter permease	NA	NA	NA	NA	NA
SQF24140.1|269283_270087_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	2.1e-11
SQF24141.1|270253_270541_+	10 kDa chaperonin	NA	NA	NA	NA	NA
SQF24142.1|270589_272209_+	Chaperonin GroEL (HSP60 family)	NA	A0A219YK78	uncultured_virus	55.6	7.3e-152
SQF24143.1|272303_272684_+|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF24144.1|272684_272867_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF24145.1|272815_273247_+|transposase	IS861, transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	49.0	1.2e-16
SQF24146.1|273210_273429_+|transposase	IS3-Spn1 transposase	transposase	A0A1B1P773	Bacillus_phage	61.8	6.8e-13
SQF24147.1|273644_273851_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24148.1|274244_274346_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24149.1|274594_274744_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24150.1|274743_275076_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
SQF24151.1|275255_276128_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQF24152.1|276193_278521_+	penicillin-binding protein 2A	NA	NA	NA	NA	NA
SQF24153.1|278569_278722_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SQF24154.1|278730_278907_+	preprotein translocase SecE subunit	NA	NA	NA	NA	NA
SQF24155.1|279103_279643_+	transcription antitermination protein	NA	NA	NA	NA	NA
SQF24156.1|279764_280253_+	membrane-associated phospholipid phosphatase	NA	NA	NA	NA	NA
SQF24157.1|280426_280726_-	cof family hydrolase	NA	NA	NA	NA	NA
SQF24158.1|280978_281215_-	cof family hydrolase	NA	NA	NA	NA	NA
SQF24159.1|281360_281939_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
SQF24160.1|282114_284616_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	66.8	0.0e+00
SQF24161.1|284704_284896_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF24162.1|285313_285526_+	yl CoA thioesterase	NA	NA	NA	NA	NA
SQF24163.1|285682_286432_+	acyl-CoA thioesterase 1	NA	NA	NA	NA	NA
SQF24164.1|286842_288297_+	putative nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.0	1.0e-104
SQF24165.1|288308_289130_+	NAD+ synthetase	NA	G3MA24	Bacillus_virus	55.9	3.8e-72
SQF24166.1|289145_289586_+	membrane protein	NA	NA	NA	NA	NA
SQF24167.1|289687_291025_+	aminopeptidase C	NA	NA	NA	NA	NA
SQF24168.1|291134_293432_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SQF24169.1|293431_294028_-	recombination protein U	NA	NA	NA	NA	NA
SQF24170.1|294104_294620_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF24171.1|294728_295061_+	cell cycle protein gpsB	NA	NA	NA	NA	NA
SQF24172.1|295593_296760_+	methyltransferase	NA	NA	NA	NA	NA
SQF24173.1|296762_298625_+	membrane protein	NA	NA	NA	NA	NA
SQF24174.1|298734_301830_+	ATP-dependent RNA helicase	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	27.0	4.1e-42
SQF24175.1|301985_302702_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF24176.1|302728_304057_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SQF24177.1|304298_304610_+	acetyltransferase	NA	NA	NA	NA	NA
SQF24178.1|304709_306686_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
SQF24179.1|306770_307253_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
SQF24180.1|307657_308146_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	48.1	2.9e-35
>prophage 4
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	408359	413826	2102271		Streptococcus_phage(66.67%)	7	NA	NA
SQF24290.1|408359_409124_+	branched-chain amino acid ABC transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	6.8e-15
SQF24291.1|409123_409834_+	high-affinity branched-chain amino acid transport ATP-binding protein livF	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	1.1e-14
SQF24292.1|409987_410272_+	AcuB family protein	NA	M1NSC5	Streptococcus_phage	78.9	1.0e-32
SQF24293.1|410311_410632_+	acetoin utilization protein, truncated	NA	NA	NA	NA	NA
SQF24294.1|410797_411724_-	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	79.2	3.7e-140
SQF24295.1|411825_412452_-	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	60.4	1.1e-68
SQF24296.1|412506_413826_+	late competence protein required for DNA uptake	NA	A0A1X9I5S6	Streptococcus_phage	52.3	1.1e-121
>prophage 5
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	521629	573066	2102271	holin,transposase,tRNA	Streptococcus_phage(58.33%)	53	NA	NA
SQF24402.1|521629_522967_+|transposase	DDE transposase	transposase	NA	NA	NA	NA
SQF24403.1|523588_526207_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	35.5	7.9e-63
SQF24404.1|526863_527838_+|holin	cell wall protein precursor, choline binding protein, truncated	holin	NA	NA	NA	NA
SQF24405.1|528254_528788_+|holin	cell wall protein, choline binding protein	holin	NA	NA	NA	NA
SQF24406.1|528933_529134_+	cell wall protein	NA	NA	NA	NA	NA
SQF24407.1|529266_530055_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
SQF24408.1|530064_531246_+	class I/II aminotransferase	NA	NA	NA	NA	NA
SQF24409.1|531373_532396_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
SQF24410.1|532424_533618_+	glutamate N-acetyltransferase/amino-acid acetyltransferase	NA	NA	NA	NA	NA
SQF24411.1|533644_534382_+	acetylglutamate kinase	NA	NA	NA	NA	NA
SQF24412.1|534385_535516_+	acetylornithine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	27.2	1.5e-23
SQF24413.1|535556_536435_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF24414.1|536609_537896_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
SQF24415.1|537979_538840_+	homoserine kinase	NA	NA	NA	NA	NA
SQF24416.1|538832_539717_+	chloramphenicol-sensitivity protein (RarD) family protein	NA	NA	NA	NA	NA
SQF24417.1|539829_540447_+	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF24418.1|540581_540785_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF24419.1|541248_541839_+	flavoprotein oxygenase-like protein	NA	NA	NA	NA	NA
SQF24420.1|541914_542295_+	acetyltransferase	NA	NA	NA	NA	NA
SQF24421.1|542413_545065_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.1	3.5e-151
SQF24422.1|545241_545439_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF24423.1|545473_546181_+	ATP synthase F0 subunit A	NA	NA	NA	NA	NA
SQF24424.1|546201_546699_+	ATP synthase F0 subunit B	NA	NA	NA	NA	NA
SQF24425.1|546698_547235_+	ATP synthase F1 subunit delta	NA	NA	NA	NA	NA
SQF24426.1|547250_548756_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF24427.1|548774_549653_+	ATP synthase F1 subunit gamma	NA	NA	NA	NA	NA
SQF24428.1|549729_551136_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF24429.1|551148_551571_+	ATP synthase F0F1 subunit epsilon	NA	NA	NA	NA	NA
SQF24430.1|551822_553103_+	cell division protein	NA	NA	NA	NA	NA
SQF24431.1|553340_554537_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	2.8e-31
SQF24432.1|554785_555544_+	triosephosphate isomerase	NA	NA	NA	NA	NA
SQF24433.1|555781_556411_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	66.5	5.0e-72
SQF24434.1|556419_557295_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	50.7	1.1e-72
SQF24435.1|557291_558098_+	regulator of signaling phosphorelay	NA	NA	NA	NA	NA
SQF24436.1|558084_558405_+	regulator of replication initiation timing	NA	M1PFV3	Streptococcus_phage	56.1	2.7e-26
SQF24437.1|558407_559274_+	tetrapyrrole methylase family protein	NA	M1PLC5	Streptococcus_phage	76.5	7.2e-122
SQF24438.1|559323_560580_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.8	7.0e-126
SQF24439.1|560840_562076_+	ammonium transporter	NA	NA	NA	NA	NA
SQF24440.1|562086_562428_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQF24441.1|562525_563182_+	peptidoglycan hydrolase	NA	S5M9Y4	Brevibacillus_phage	34.0	5.8e-07
SQF24442.1|563204_564026_+	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF24443.1|564730_565321_+	Na/Pi cotransporter II-related protein, truncated	NA	NA	NA	NA	NA
SQF24444.1|565405_566554_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
SQF24445.1|566658_566982_+	Uncharacterized membrane protein	NA	NA	NA	NA	NA
SQF24446.1|566959_567157_+	Uncharacterized membrane protein	NA	NA	NA	NA	NA
SQF24447.1|567140_567509_+	Uncharacterized membrane protein	NA	NA	NA	NA	NA
SQF24448.1|567453_567912_+	Uncharacterized membrane protein	NA	NA	NA	NA	NA
SQF24449.1|568183_569101_+|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
SQF24450.1|569386_571423_+|tRNA	glycyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF24451.1|571435_571693_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF24452.1|571773_571962_+	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF24453.1|572277_572439_-|transposase	transposase, ISSmu2	transposase	A0A1S5SBP9	Streptococcus_phage	60.4	5.2e-10
SQF24454.1|572457_573066_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	53.8	9.1e-55
>prophage 6
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	618726	632702	2102271	bacteriocin,integrase,transposase	Marinitoga_camini_virus(25.0%)	15	617443:617459	642852:642868
617443:617459	attL	AAGAATCTTTCAGGAGG	NA	NA	NA	NA
SQF24505.1|618726_619482_+|bacteriocin	putative transporter, trans-membrane domain bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQF24506.1|619478_620213_+|bacteriocin	putative transporter, trans-membrane domain bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQF24507.1|620728_620953_+	DNA-binding protein	NA	A0A142LP08	Marinitoga_camini_virus	38.5	4.1e-05
SQF24508.1|621224_621473_+	Domain of uncharacterised function (DUF3173)	NA	NA	NA	NA	NA
SQF24509.1|621475_622681_+|integrase	integrase	integrase	A8ATX2	Listeria_phage	28.9	1.7e-12
SQF24510.1|622905_624210_-|transposase	transposase IS204/IS1001/IS1096/IS1165 family protein	transposase	A0A1S5SBP9	Streptococcus_phage	72.2	5.7e-171
SQF24511.1|624613_624820_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF24512.1|625011_625686_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	1.3e-30
SQF24513.1|625690_626737_-	lr1816	NA	NA	NA	NA	NA
SQF24514.1|627052_627172_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24515.1|627426_627714_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24516.1|627735_628581_+	surface-associated protein cshA precursor, truncated	NA	NA	NA	NA	NA
SQF24517.1|628519_628906_+	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQF24518.1|629300_632240_+	putative cell surface protein	NA	NA	NA	NA	NA
SQF24519.1|632597_632702_+|integrase	integrase	integrase	NA	NA	NA	NA
642852:642868	attR	AAGAATCTTTCAGGAGG	NA	NA	NA	NA
>prophage 7
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	710938	796005	2102271	holin,integrase,bacteriocin,tRNA,transposase,portal,capsid,tail,protease,terminase	Streptococcus_phage(88.31%)	108	727540:727582	768505:768547
SQF24604.1|710938_711436_+|protease	putative metalloprotease ykjF	protease	NA	NA	NA	NA
SQF24605.1|711416_711821_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF24606.1|711839_712739_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF24607.1|712785_713607_+	formamidopyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	32.4	4.1e-26
SQF24608.1|713603_714197_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF24609.1|714247_715471_+	multi-drug resistance efflux pump	NA	NA	NA	NA	NA
SQF24610.1|715652_715889_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
SQF24611.1|715947_718401_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.3	3.4e-92
SQF24612.1|718422_718887_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.4	8.8e-42
SQF24613.1|719041_720448_+	putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase	NA	A0A1V0S9I2	Catovirus	42.3	5.1e-24
SQF24614.1|720449_720815_+	general stress protein GSP13	NA	NA	NA	NA	NA
SQF24615.1|720917_722003_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF24616.1|722316_723318_+	catabolite control protein	NA	NA	NA	NA	NA
SQF24617.1|723376_723574_+	MmcQ family protein	NA	NA	NA	NA	NA
SQF24618.1|724171_724447_+	MmcQ protein	NA	NA	NA	NA	NA
SQF24619.1|724459_725575_+	putative glycerate kinase	NA	W6LM47	Streptococcus_phage	100.0	2.3e-157
SQF24620.1|725613_726069_-	glycogen synthase	NA	W6LLD2	Streptococcus_phage	100.0	1.0e-79
SQF24621.1|726277_727582_+	Enolase	NA	W6LP63	Streptococcus_phage	100.0	2.2e-247
727540:727582	attL	AGAATACCGTGGTTTGAAATCATTCTACAACTTGAAAAAATAA	NA	NA	NA	NA
SQF24622.1|727641_728805_-|integrase	phage integrase family protein	integrase	W6LMU7	Streptococcus_phage	100.0	2.5e-218
SQF24623.1|728952_729381_-	Host cell surface-exposed lipoprotein	NA	W6LMS1	Streptococcus_phage	100.0	2.2e-23
SQF24624.1|729460_729829_-	cI-like repressor, metallo-prtoeinase motif protein	NA	W6LM52	Streptococcus_phage	100.0	2.0e-65
SQF24625.1|729835_730186_-	Transcriptional regulator, MerR family	NA	W6LLD7	Streptococcus_phage	100.0	2.5e-57
SQF24626.1|730371_730599_+	prophage LambdaSa03, Cro/CI family transcriptional regulator	NA	W6LP64	Streptococcus_phage	100.0	1.5e-34
SQF24627.1|730616_731519_+	Protein of uncharacterised function (DUF3102)	NA	W6LMU8	Streptococcus_phage	100.0	1.0e-158
SQF24628.1|731511_732060_+	ORF6C domain	NA	W6LMS2	Streptococcus_phage	100.0	8.1e-95
SQF24629.1|732065_732335_+	Phage excisionase	NA	W6LM55	Streptococcus_phage	100.0	1.8e-47
SQF24630.1|732312_732621_+	Uncharacterised protein	NA	W6LLE2	Streptococcus_phage	100.0	4.8e-52
SQF24631.1|732758_733022_+	Uncharacterised protein	NA	W6LP65	Streptococcus_phage	100.0	7.2e-49
SQF24632.1|733040_733199_+	Uncharacterised protein	NA	W6LMU9	Streptococcus_phage	100.0	3.4e-22
SQF24633.1|733415_734264_+	replication protein	NA	A0A2I6QQV2	Streptococcus_phage	83.1	3.9e-112
SQF24634.1|734276_735059_+	phage replication protein	NA	W6LLE6	Streptococcus_phage	100.0	3.9e-143
SQF24635.1|735055_735238_+	Uncharacterised protein	NA	W6LP66	Streptococcus_phage	100.0	2.6e-26
SQF24636.1|735363_736020_+	erf, bacteriophage HK97 GP40	NA	W6LMV0	Streptococcus_phage	100.0	2.3e-112
SQF24637.1|736022_736982_+	phage protein	NA	W6LMS4	Streptococcus_phage	100.0	9.3e-163
SQF24638.1|737002_737467_+	ssDNA-binding protein	NA	W6LM61	Streptococcus_phage	100.0	3.5e-83
SQF24639.1|737482_737938_+	Phage Holliday junction resolvase	NA	W6LLF0	Streptococcus_phage	100.0	4.8e-85
SQF24640.1|737934_738174_+	Gp89	NA	W6LP67	Streptococcus_phage	100.0	3.6e-39
SQF24641.1|738161_738335_+	Uncharacterised protein	NA	W6LMV1	Streptococcus_phage	100.0	4.0e-24
SQF24642.1|738331_738493_+	Uncharacterised protein	NA	W6LMS5	Streptococcus_phage	100.0	3.1e-23
SQF24643.1|738541_738724_+	Uncharacterised protein	NA	W6LM64	Streptococcus_phage	100.0	6.5e-25
SQF24644.1|738887_739466_+	phage protein	NA	W6LLF4	Streptococcus_phage	100.0	2.7e-109
SQF24645.1|739449_739566_+	Uncharacterised protein	NA	W6LP68	Streptococcus_phage	100.0	5.0e-15
SQF24646.1|739586_740090_+	phage protein	NA	W6LMV2	Streptococcus_phage	100.0	9.7e-95
SQF24647.1|740090_740513_+	transcriptional regulator	NA	W6LMS6	Streptococcus_phage	100.0	1.6e-74
SQF24648.1|740481_740790_+	phage protein	NA	W6LM66	Streptococcus_phage	100.0	1.7e-49
SQF24649.1|740786_741221_+	phage protein	NA	W6LLF9	Streptococcus_phage	100.0	2.1e-82
SQF24650.1|741217_741466_+	Uncharacterised protein	NA	W6LP69	Streptococcus_phage	100.0	2.0e-40
SQF24651.1|741535_742243_+	Protein of uncharacterised function (DUF1340)	NA	W6LMV3	Streptococcus_phage	100.0	4.2e-128
SQF24652.1|742455_742872_+	phage encoded transcriptional regulator, ArpU family	NA	W6LMS7	Streptococcus_phage	100.0	2.1e-74
SQF24653.1|743053_743506_+|terminase	Phage terminase, small subunit	terminase	W6LM69	Streptococcus_phage	100.0	2.5e-73
SQF24654.1|743492_744728_+|terminase	Phage terminase, large subunit	terminase	W6LLG2	Streptococcus_phage	100.0	1.9e-245
SQF24655.1|744736_746236_+|portal	phage portal protein, SPP1 family	portal	W6LP70	Streptococcus_phage	100.0	6.3e-283
SQF24656.1|746239_747133_+	phage protein	NA	W6LMV4	Streptococcus_phage	100.0	2.5e-162
SQF24657.1|747314_747908_+	phage scaffold protein	NA	W6LMS8	Streptococcus_phage	100.0	2.0e-51
SQF24658.1|747924_748284_+	phage structural protein	NA	W6LM71	Streptococcus_phage	100.0	6.1e-59
SQF24659.1|748306_749353_+|capsid	Phage major capsid protein	capsid	W6LLG5	Streptococcus_phage	100.0	6.8e-191
SQF24660.1|749368_749524_+	phage protein	NA	W6LP71	Streptococcus_phage	100.0	3.7e-21
SQF24661.1|749541_749886_+	phage protein	NA	W6LMV5	Streptococcus_phage	100.0	1.3e-58
SQF24662.1|749882_750197_+	phage protein	NA	W6LMS9	Streptococcus_phage	100.0	9.8e-53
SQF24663.1|750196_750535_+	phage protein	NA	W6LM73	Streptococcus_phage	100.0	7.3e-54
SQF24664.1|750536_750923_+	phage protein	NA	W6LLG8	Streptococcus_phage	100.0	1.0e-67
SQF24665.1|750934_751441_+|tail	Phage tail protein	tail	W6LP72	Streptococcus_phage	100.0	8.0e-89
SQF24666.1|751518_751872_+	phage protein	NA	W6LMV6	Streptococcus_phage	100.0	3.0e-58
SQF24667.1|751961_752240_+	Uncharacterised protein	NA	A0A2H4J2Z7	uncultured_Caudovirales_phage	85.9	1.1e-36
SQF24668.1|752229_756846_+	phage protein	NA	W6LM75	Streptococcus_phage	100.0	1.1e-280
SQF24669.1|756845_758381_+	putative minor structural protein	NA	W6LLH2	Streptococcus_phage	100.0	2.1e-310
SQF24670.1|758380_761815_+	putative antireceptor	NA	W6LP73	Streptococcus_phage	100.0	0.0e+00
SQF24671.1|761817_763827_+	phage structural protein	NA	W6LMV7	Streptococcus_phage	100.0	0.0e+00
SQF24672.1|763842_764265_+	phage protein	NA	W6LMT1	Streptococcus_phage	100.0	8.8e-65
SQF24673.1|764288_764435_+	Uncharacterised protein	NA	W6LM78	Streptococcus_phage	100.0	7.3e-19
SQF24674.1|764448_764772_+	Uncharacterised protein	NA	W6LLH5	Streptococcus_phage	100.0	8.5e-52
SQF24675.1|764780_765023_+|holin	holin	holin	W6LP74	Streptococcus_phage	100.0	1.7e-36
SQF24676.1|765024_765870_+	putative lysin	NA	W6LMV8	Streptococcus_phage	100.0	8.5e-168
SQF24677.1|766354_766699_+	Uncharacterised protein	NA	W6LMT2	Streptococcus_phage	100.0	1.7e-58
SQF24678.1|766720_767272_+	Uncharacterised protein	NA	W6LM80	Streptococcus_phage	100.0	1.8e-102
SQF24679.1|767297_767549_+	Uncharacterised protein	NA	W6LLH9	Streptococcus_phage	100.0	1.3e-39
SQF24680.1|767574_767754_+	Uncharacterised protein	NA	W6LP75	Streptococcus_phage	100.0	2.8e-28
SQF24681.1|767812_768235_+	putative phage-associated protein	NA	W6LMV9	Streptococcus_phage	100.0	2.5e-72
SQF24682.1|768699_768885_-|tRNA	Isoleucyl-tRNA synthetase, putative	tRNA	W6LMT3	Streptococcus_phage	100.0	2.7e-26
768505:768547	attR	AGAATACCGTGGTTTGAAATCATTCTACAACTTGAAAAAATAA	NA	NA	NA	NA
SQF24683.1|769046_771233_-	glycerol phosphate lipoteichoic acid synthase 2	NA	W6LM83	Streptococcus_phage	100.0	0.0e+00
SQF24684.1|771394_772558_+	methyltransferase	NA	W6LLI2	Streptococcus_phage	100.0	1.2e-220
SQF24685.1|772554_773232_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
SQF24686.1|773221_774079_+	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
SQF24687.1|774091_775159_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
SQF24688.1|775159_776326_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.6e-39
SQF24689.1|776355_777462_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
SQF24690.1|777471_777810_+	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	47.2	1.8e-20
SQF24691.1|777865_778816_+	L-2-hydroxyisocaproate dehydrogenase	NA	NA	NA	NA	NA
SQF24692.1|778896_780180_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF24693.1|780172_780664_+	shikimate kinase	NA	NA	NA	NA	NA
SQF24694.1|780654_781479_+	prephenate dehydratase	NA	NA	NA	NA	NA
SQF24695.1|781490_782921_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SQF24696.1|782936_783875_-	Exfoliative toxin A	NA	NA	NA	NA	NA
SQF24697.1|783891_784956_-	Acyl-CoA dehydrogenase, short-chain specific	NA	NA	NA	NA	NA
SQF24698.1|784995_785544_-	Macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
SQF24699.1|785759_787130_+	23S rRNA-methyltransferase	NA	D0R096	Streptococcus_phage	77.8	2.5e-201
SQF24700.1|787902_788220_+	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
SQF24701.1|788399_788966_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24702.1|790074_791115_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	34.4	2.5e-28
SQF24703.1|791602_791863_+|transposase	transposase-like protein	transposase	A0A1P8CWP5	Bacillus_phage	37.6	3.2e-09
SQF24704.1|791874_792573_+|transposase	IS981 transposase B	transposase	U5P429	Shigella_phage	34.6	1.3e-25
SQF24705.1|792887_793085_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQF24706.1|793780_794173_+	Probable type II DNA modification enzyme	NA	NA	NA	NA	NA
SQF24707.1|794169_794532_+	Pyrimidine dimer DNA glycosylase	NA	NA	NA	NA	NA
SQF24708.1|794673_794922_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24709.1|795073_795289_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24710.1|795393_795615_+|protease	CAAX amino protease family protein	protease	NA	NA	NA	NA
SQF24711.1|795747_796005_+|protease	CAAX amino protease family protein	protease	NA	NA	NA	NA
>prophage 8
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	813968	857126	2102271	transposase,tRNA,protease	Streptococcus_phage(36.36%)	46	NA	NA
SQF24728.1|813968_814898_+|protease	protease	protease	NA	NA	NA	NA
SQF24729.1|814994_816281_+	U32 family peptidase	NA	Q6DW11	Phage_TP	32.2	7.9e-40
SQF24730.1|816650_817190_-	biotin synthase	NA	NA	NA	NA	NA
SQF24731.1|817284_817569_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24732.1|817694_817907_+|tRNA	bacterial seryl-tRNA synthetase related protein	tRNA	NA	NA	NA	NA
SQF24733.1|817941_819276_-	manganese transport protein	NA	NA	NA	NA	NA
SQF24734.1|819470_819683_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24735.1|820350_820653_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF24736.1|820701_821607_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	57.3	2.6e-90
SQF24737.1|821742_822360_-	Homoserine/homoserine lactone efflux protein	NA	NA	NA	NA	NA
SQF24738.1|822361_823357_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24739.1|823705_824881_+|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	1.6e-31
SQF24740.1|825031_825661_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	60.1	8.8e-61
SQF24741.1|825696_827187_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A2K9L3L6	Tupanvirus	39.5	3.0e-91
SQF24742.1|827315_827456_+	LysM domain-containing protein	NA	NA	NA	NA	NA
SQF24743.1|828051_828594_+	LysM domain-containing protein	NA	NA	NA	NA	NA
SQF24744.1|828703_829087_+|tRNA	valyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF24745.1|829437_830340_+	hydrolase	NA	NA	NA	NA	NA
SQF24746.1|830763_831402_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
SQF24747.1|831404_831878_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF24748.1|831992_832940_-	endolysin	NA	A9QTG1	Bacillus_phage	36.6	1.4e-22
SQF24749.1|833131_833521_-	Na+ driven multidrug efflux pump	NA	NA	NA	NA	NA
SQF24750.1|833776_834403_-	membrane protein	NA	NA	NA	NA	NA
SQF24751.1|834514_834616_+	suB1079 undefined product 1051177:1052352 reverse MW:44904	NA	NA	NA	NA	NA
SQF24752.1|834649_834931_+	suB1079 undefined product 1051177:1052352 reverse MW:44904	NA	NA	NA	NA	NA
SQF24753.1|835213_835375_+	Lipase	NA	NA	NA	NA	NA
SQF24754.1|835702_836011_+	short chain dehydrogenase/reductase family oxidoreductase	NA	NA	NA	NA	NA
SQF24755.1|836026_836467_+	short chain dehydrogenase/reductase family oxidoreductase	NA	NA	NA	NA	NA
SQF24756.1|836725_839716_+	type I restriction-modification system restriction subunit	NA	NA	NA	NA	NA
SQF24757.1|839774_841964_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQF24758.1|841995_843180_+	type I restriction-modification system specificty subunit	NA	A0A2H4PQP5	Staphylococcus_phage	28.8	1.6e-10
SQF24759.1|843191_843779_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24760.1|843806_844559_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24761.1|844601_846206_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	47.1	1.9e-115
SQF24762.1|846283_846598_+|tRNA	glycyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
SQF24763.1|846628_847171_+|tRNA	glycyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
SQF24764.1|847424_848435_+	deoxyribonuclease	NA	NA	NA	NA	NA
SQF24765.1|848552_849113_+	cytoplasmic membrane protein	NA	NA	NA	NA	NA
SQF24766.1|849114_850014_+|protease	protease HtpX-like protein	protease	NA	NA	NA	NA
SQF24767.1|850131_850605_+	integral membrane protein	NA	NA	NA	NA	NA
SQF24768.1|850601_850997_+	Additional lipoprotein component of predicted cobalamin ECF transporter	NA	NA	NA	NA	NA
SQF24769.1|851173_853996_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SQF24770.1|854063_855098_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF24771.1|855192_855798_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.7	1.8e-58
SQF24772.1|855869_856667_-|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	58.0	1.4e-79
SQF24773.1|856706_857126_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	58.3	1.9e-35
>prophage 9
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	899352	942562	2102271	integrase,transposase,tRNA	Streptococcus_phage(17.39%)	49	897060:897075	933521:933536
897060:897075	attL	GAAGATTATCAGTCAA	NA	NA	NA	NA
SQF24813.1|899352_899694_-|integrase	DNA integrase	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	49.6	5.1e-23
SQF24814.1|900248_900359_-|transposase	IS861, transposase (orf1), IS3 family, truncated	transposase	NA	NA	NA	NA
SQF24815.1|900440_900707_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF24816.1|900905_903542_-	calcium-translocating P-type ATPase	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.1	8.2e-84
SQF24817.1|903717_905436_-	para-aminobenzoate synthetase component I	NA	S4VT78	Pandoravirus	35.4	1.3e-26
SQF24818.1|905582_905918_+	phage protein	NA	NA	NA	NA	NA
SQF24819.1|906246_908496_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
SQF24820.1|908684_909560_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
SQF24821.1|909699_911418_-	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	83.0	1.7e-271
SQF24822.1|911500_912073_-	membrane protein	NA	NA	NA	NA	NA
SQF24823.1|912100_912646_-	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
SQF24824.1|912638_913322_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
SQF24825.1|913515_915186_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
SQF24826.1|915371_916046_+	transcriptional activator protein CopR	NA	W8CYM9	Bacillus_phage	34.1	3.3e-29
SQF24827.1|916035_916275_+	sensor histidine kinase CiaH-like protein, truncated	NA	NA	NA	NA	NA
SQF24828.1|916413_916761_+	sensor histidine kinase CiaH-like protein, truncated	NA	NA	NA	NA	NA
SQF24829.1|916760_917456_+	sensor histidine kinase CiaH-like protein, truncated	NA	Q8QNA2	Ectocarpus_siliculosus_virus	30.5	5.2e-06
SQF24830.1|917556_918243_+|transposase	IS3 familytransposase orf1	transposase	NA	NA	NA	NA
SQF24831.1|918257_919127_+|transposase	ISSth1, transposase (orf2), IS3 family	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	1.1e-53
SQF24832.1|919491_919728_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
SQF24833.1|919796_920717_-	pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.1	1.9e-35
SQF24834.1|921038_921629_+	Methyltransferase small domain protein	NA	NA	NA	NA	NA
SQF24835.1|921669_921897_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	61.4	4.3e-18
SQF24836.1|921908_922079_+	pyrimidine-nucleoside phosphorylase, truncated	NA	A0A0H3UZD4	Geobacillus_virus	76.6	1.4e-13
SQF24837.1|922059_922776_+	pyrimidine nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	46.8	5.1e-49
SQF24838.1|922723_922861_+	pyrimidine-nucleoside phosphorylase, truncated	NA	NA	NA	NA	NA
SQF24839.1|922933_923188_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQF24840.1|923199_923595_+	deoxyribose-phosphate aldolase, truncated	NA	NA	NA	NA	NA
SQF24841.1|923581_923914_+	cytidine deaminase	NA	NA	NA	NA	NA
SQF24842.1|924042_925113_+	ABC-type transport system, periplasmic component/surface lipoprotein	NA	NA	NA	NA	NA
SQF24843.1|925226_926765_+	putative ribose/galactose/methyl galactoside import ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	6.3e-20
SQF24844.1|926757_927825_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
SQF24845.1|927826_928783_+	ABC transporter sugar permease protein	NA	NA	NA	NA	NA
SQF24846.1|928886_929522_-	metallo-beta-lactamase	NA	A0A1X9I5D3	Streptococcus_phage	60.0	2.9e-72
SQF24847.1|929617_932104_+	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon	NA	A0A1X9I5C8	Streptococcus_phage	47.4	2.2e-211
SQF24848.1|932248_932731_+	membrane protein	NA	NA	NA	NA	NA
SQF24849.1|932735_933917_+	aspartate aminotransferase	NA	NA	NA	NA	NA
933521:933536	attR	GAAGATTATCAGTCAA	NA	NA	NA	NA
SQF24850.1|933953_935300_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	31.4	3.3e-57
SQF24851.1|935324_935732_+	glycosyltransferase	NA	NA	NA	NA	NA
SQF24852.1|935796_936147_-|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	61.9	1.5e-30
SQF24853.1|936264_936606_-|transposase	truncated IS1193 transposase	transposase	NA	NA	NA	NA
SQF24854.1|936813_937194_+	translation initiation inhibitor	NA	NA	NA	NA	NA
SQF24855.1|937368_938022_+	ExsB protein	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.3	9.7e-63
SQF24856.1|938021_938465_+	6-pyruvoyl-tetrahydropterin synthase	NA	J9PV91	Bacillus_phage	56.3	3.5e-40
SQF24857.1|938457_939174_+	pyruvate-formate lyase-activating enzyme	NA	A0A1U9WRB6	Streptococcus_virus	46.9	3.4e-61
SQF24858.1|939303_939795_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	56.7	1.8e-45
SQF24859.1|940188_941202_+|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	31.9	1.8e-31
SQF24860.1|941605_941932_-	type I restriction-modification system specificty subunit, truncated	NA	NA	NA	NA	NA
SQF24861.1|942031_942562_-	type I restriction-modification system methyltransferase subunit, truncated	NA	A0A2H4PQP4	Staphylococcus_phage	51.5	9.1e-43
>prophage 10
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1008909	1019397	2102271	transposase	Streptococcus_phage(22.22%)	13	NA	NA
SQF24930.1|1008909_1009623_+	peptidoglycan hydrolase	NA	A0A0K2CP65	Brevibacillus_phage	33.3	5.2e-09
SQF24931.1|1009800_1010430_+|transposase	IS3-Spn1, transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	47.6	1.2e-28
SQF24932.1|1010600_1011509_-	fhu operon transcription regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	29.0	2.1e-07
SQF24933.1|1011715_1013524_+	glucosamine-fructose-6-phosphate aminotransferase	NA	M1I2B0	Paramecium_bursaria_Chlorella_virus	37.1	7.3e-92
SQF24934.1|1013640_1013970_+	putative alkylphosphonate utilization operon protein PhnA	NA	NA	NA	NA	NA
SQF24935.1|1014165_1014807_+	ABC transporter permease	NA	NA	NA	NA	NA
SQF24936.1|1014815_1015445_+	glutamine transport ATP-binding protein GlnQ	NA	G3M9Y6	Bacillus_virus	39.7	2.5e-31
SQF24937.1|1015457_1016309_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF24938.1|1016474_1016912_+	SOS responce UmuC protein	NA	Q6DMX4	Streptococcus_phage	74.1	1.5e-54
SQF24939.1|1016940_1017594_+	umuC-MucB-like protein	NA	Q6DMX4	Streptococcus_phage	62.9	1.1e-71
SQF24940.1|1017945_1018035_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF24941.1|1018373_1018718_+	alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	44.1	1.4e-07
SQF24942.1|1018731_1019397_+	alcohol dehydrogenase 1 (Alcohol dehydrogenase I) (ADH I)	NA	A0A2K9L339	Tupanvirus	27.4	1.6e-15
>prophage 11
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1236697	1289147	2102271	transposase	Streptococcus_phage(16.67%)	59	NA	NA
SQF25187.1|1236697_1237306_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	52.8	1.0e-53
SQF25188.1|1237324_1237954_+|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	59.6	5.7e-60
SQF25189.1|1238040_1239543_-	pyruvate kinase	NA	NA	NA	NA	NA
SQF25190.1|1239612_1240632_-	6-phosphofructokinase	NA	NA	NA	NA	NA
SQF25191.1|1240724_1243835_-	DNA polymerase III subunit alpha	NA	A0A1C9LWZ5	Streptomyces_phage	28.5	3.8e-112
SQF25192.1|1243987_1244773_-	putative translation factor (SUA5)	NA	NA	NA	NA	NA
SQF25193.1|1244869_1245460_-	isopropylmalate isomerase small subunit	NA	NA	NA	NA	NA
SQF25194.1|1245469_1246852_-	isopropylmalate isomerase large subunit	NA	NA	NA	NA	NA
SQF25195.1|1246882_1247164_-	membrane protein	NA	NA	NA	NA	NA
SQF25196.1|1247168_1248206_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQF25197.1|1248218_1249781_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.2	1.1e-08
SQF25198.1|1250128_1250821_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF25199.1|1251075_1252014_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.0	4.1e-62
SQF25200.1|1252078_1252279_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF25201.1|1252337_1252613_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	69.7	4.9e-24
SQF25202.1|1252749_1253319_-	putative uncharacterized protein ORF 2	NA	NA	NA	NA	NA
SQF25203.1|1253311_1253815_-	Lipase/acylhydrolase	NA	NA	NA	NA	NA
SQF25204.1|1253789_1254188_-	Lipase/acylhydrolase	NA	NA	NA	NA	NA
SQF25205.1|1254180_1255017_-	DegV family protein	NA	NA	NA	NA	NA
SQF25206.1|1255087_1256758_-	DNA repair protein RecN	NA	NA	NA	NA	NA
SQF25207.1|1256766_1257213_-	arginine repressor	NA	NA	NA	NA	NA
SQF25208.1|1257160_1258027_-	hemolysin	NA	NA	NA	NA	NA
SQF25209.1|1258019_1258892_-	geranyltranstransferase	NA	NA	NA	NA	NA
SQF25210.1|1258891_1259107_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SQF25211.1|1259084_1260425_-	exodeoxyribonuclease VII large subunit	NA	M1NLU2	Moumouvirus	34.4	3.4e-38
SQF25212.1|1260613_1261147_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25213.1|1261263_1261368_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25214.1|1261494_1262139_-	endonuclease III, DNA repair	NA	NA	NA	NA	NA
SQF25215.1|1262138_1262837_-	DNA replication protein DnaD	NA	NA	NA	NA	NA
SQF25216.1|1262908_1263853_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
SQF25217.1|1264024_1264543_-	putative adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.6	7.8e-31
SQF25218.1|1264657_1266868_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.0	3.0e-71
SQF25219.1|1266880_1267648_-	oxidoreductase, short chaindehydrogenase-reductase	NA	NA	NA	NA	NA
SQF25220.1|1267647_1268577_-	ribonuclease Z	NA	NA	NA	NA	NA
SQF25221.1|1268608_1269250_-	Galactose-1-phosphate uridyltransferase-like protein distant	NA	NA	NA	NA	NA
SQF25222.1|1269242_1270481_-	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQF25223.1|1270600_1272028_-	cell division protein	NA	NA	NA	NA	NA
SQF25224.1|1272532_1272847_-	phosphoribosyl-ATP pyrophosphatase	NA	NA	NA	NA	NA
SQF25225.1|1272855_1273194_-	phosphoribosyl-ATP pyrophosphohydrolase	NA	NA	NA	NA	NA
SQF25226.1|1273190_1273949_-	Imidazole glycerol phosphate synthase cyclase subunit	NA	A0A2H4UVM0	Bodo_saltans_virus	23.3	1.7e-05
SQF25227.1|1273950_1274670_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA	NA
SQF25228.1|1274718_1275327_-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	NA	NA	NA	NA	NA
SQF25229.1|1275323_1275908_-	Imidazoleglycerol-phosphate dehydratase (IGPD)	NA	NA	NA	NA	NA
SQF25230.1|1275927_1277211_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
SQF25231.1|1277207_1277858_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF25232.1|1277850_1278831_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
SQF25233.1|1278827_1279880_-	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
SQF25234.1|1280573_1280795_-|transposase	transposase InsK IS150	transposase	A0A0C5AEA5	Paenibacillus_phage	47.5	2.7e-09
SQF25235.1|1280849_1280957_-|transposase	transposase, ISSmu1	transposase	NA	NA	NA	NA
SQF25236.1|1281065_1281701_-|transposase	IS861, transposase OrfA	transposase	NA	NA	NA	NA
SQF25237.1|1281776_1282031_-	membrane protein	NA	NA	NA	NA	NA
SQF25238.1|1282105_1282645_-	Exopolysaccharide biosynthesis N-acetylglucosamine-1-phosphodiester alpha-N -acetylglucosaminidase-like protein	NA	NA	NA	NA	NA
SQF25239.1|1282741_1282948_-	Putative exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SQF25240.1|1283044_1283785_-	histidinol-phosphatase	NA	NA	NA	NA	NA
SQF25241.1|1283787_1284432_-	integral membrane protein	NA	NA	NA	NA	NA
SQF25242.1|1284421_1285195_-	HAD-superfamily hydrolase	NA	NA	NA	NA	NA
SQF25243.1|1285196_1285940_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
SQF25244.1|1285940_1287077_-	putative oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SQF25245.1|1287971_1289147_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	4.2e-32
>prophage 12
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1324178	1377962	2102271	bacteriocin,transposase,tRNA	Bacillus_virus(16.67%)	53	NA	NA
SQF25278.1|1324178_1324307_+|transposase	truncated IS1193 transposase	transposase	NA	NA	NA	NA
SQF25279.1|1324698_1325112_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25280.1|1325189_1325564_+|transposase	transposase IS116/IS110/IS902 (fragment)	transposase	NA	NA	NA	NA
SQF25281.1|1325829_1326798_-	Extracellular protein	NA	NA	NA	NA	NA
SQF25282.1|1326995_1327313_-	lactoylglutathione lyase or related lyase	NA	NA	NA	NA	NA
SQF25283.1|1327350_1328112_-	sortase	NA	NA	NA	NA	NA
SQF25284.1|1328144_1330580_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.2	1.5e-108
SQF25285.1|1330798_1331785_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
SQF25286.1|1331877_1333251_-	NADH oxidase (H2O-forming)	NA	NA	NA	NA	NA
SQF25287.1|1333566_1335105_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.6	3.7e-52
SQF25288.1|1335243_1335654_-	membrane protein	NA	NA	NA	NA	NA
SQF25289.1|1335928_1336900_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	1.6e-32
SQF25290.1|1336984_1337095_-	membrane protein	NA	NA	NA	NA	NA
SQF25291.1|1337084_1337624_-	pyridoxal/pyridoxine/pyridoxamine kinase	NA	NA	NA	NA	NA
SQF25292.1|1337616_1337943_-	pyridoxamine kinase	NA	NA	NA	NA	NA
SQF25293.1|1337943_1338453_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQF25294.1|1338590_1339121_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25295.1|1339278_1340544_+	transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	53.3	4.0e-113
SQF25296.1|1340587_1340926_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A248SK58	Salicola_phage	37.9	4.3e-06
SQF25297.1|1341354_1341591_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25298.1|1341657_1344066_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	29.7	8.4e-11
SQF25299.1|1344366_1344885_-	acetyltransferase	NA	NA	NA	NA	NA
SQF25300.1|1344901_1345945_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	34.0	6.6e-29
SQF25301.1|1346564_1350098_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
SQF25302.1|1350100_1350790_-	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	33.8	1.4e-22
SQF25303.1|1350946_1351882_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SQF25304.1|1352219_1353296_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQF25305.1|1353630_1354065_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
SQF25306.1|1354424_1354937_-	phosphinothricin acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	48.1	8.0e-36
SQF25307.1|1355096_1355324_+|transposase	truncated IS1193 transposase	transposase	NA	NA	NA	NA
SQF25308.1|1355989_1357435_-	cardiolipin synthetase (Cardiolipin synthase) (CL synthase)	NA	NA	NA	NA	NA
SQF25309.1|1357628_1359416_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
SQF25310.1|1359475_1359715_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF25311.1|1359973_1360234_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF25312.1|1361139_1361766_-	proline/glycine betaine ABC transporter	NA	NA	NA	NA	NA
SQF25313.1|1361770_1362526_-	proline/glycine betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.6	2.7e-24
SQF25314.1|1362537_1363455_-	proline/glycine betaine ABC transporter membrane-spanning protein	NA	NA	NA	NA	NA
SQF25315.1|1363451_1364111_-	proline/glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF25316.1|1364151_1365663_-	histidine ammonia-lyase	NA	NA	NA	NA	NA
SQF25317.1|1365685_1366789_-	OsrF	NA	NA	NA	NA	NA
SQF25318.1|1366805_1368440_-	urocanate hydratase	NA	NA	NA	NA	NA
SQF25319.1|1368924_1369437_+	L-serine dehydratase subunit beta	NA	NA	NA	NA	NA
SQF25320.1|1369349_1369952_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQF25321.1|1369948_1371043_-	sensor histidine kinase	NA	NA	NA	NA	NA
SQF25322.1|1371035_1371773_-	multidrug ABC transporter permease	NA	NA	NA	NA	NA
SQF25323.1|1371769_1372651_-	multidrug ABC transporter ATPase	NA	A0A2R8FFL6	Cedratvirus	29.0	1.6e-15
SQF25324.1|1372643_1372823_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25325.1|1372833_1373043_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25326.1|1373195_1374134_-	bile acid transporter	NA	NA	NA	NA	NA
SQF25327.1|1374278_1374728_-	cytidine deaminase	NA	NA	NA	NA	NA
SQF25328.1|1374895_1375117_-	Fe-S-cluster oxidoreductase	NA	NA	NA	NA	NA
SQF25329.1|1375201_1377202_-	peptide-4 ABC exporter (Pep4E) family, substrate binding/membrane-spanning protein	NA	NA	NA	NA	NA
SQF25330.1|1377203_1377962_-|bacteriocin	putative bacteriocin ABC transporter	bacteriocin	G9BWD6	Planktothrix_phage	35.7	3.2e-25
>prophage 13
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1402544	1499304	2102271	tRNA,transposase,protease	Streptococcus_phage(16.13%)	98	NA	NA
SQF25357.1|1402544_1402706_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.1	5.4e-07
SQF25358.1|1402970_1403342_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25359.1|1403520_1404030_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25360.1|1404099_1404864_-	L-cystine import ATP-binding protein TcyN	NA	G9BWD6	Planktothrix_phage	40.3	1.8e-36
SQF25361.1|1404875_1405562_-	ABC-type amino acid transport permease component	NA	NA	NA	NA	NA
SQF25362.1|1405565_1406258_-	ABC-type amino acid transport permease component	NA	NA	NA	NA	NA
SQF25363.1|1406326_1407193_-	family 3 extracellular solute-binding protein	NA	NA	NA	NA	NA
SQF25364.1|1407211_1408210_-	uroporphyrinogen-III decarboxylase	NA	NA	NA	NA	NA
SQF25365.1|1408593_1409076_+	glutathione peroxidase	NA	NA	NA	NA	NA
SQF25366.1|1409183_1409444_-	integral membrane protein	NA	NA	NA	NA	NA
SQF25367.1|1409749_1410007_-	ABC transporter permease	NA	NA	NA	NA	NA
SQF25368.1|1410074_1410692_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	4.6e-22
SQF25369.1|1410742_1411261_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQF25370.1|1411410_1411812_-	oxidoreductase, aldo/keto reductase family protein	NA	NA	NA	NA	NA
SQF25371.1|1411786_1412236_-	oxidoreductase, aldo/keto reductase family protein	NA	NA	NA	NA	NA
SQF25372.1|1412236_1412335_-	oxidoreductase, aldo/keto reductase family protein	NA	NA	NA	NA	NA
SQF25373.1|1412543_1413146_-	nitroreductase family protein	NA	NA	NA	NA	NA
SQF25374.1|1413325_1414144_-	glyoxalase	NA	NA	NA	NA	NA
SQF25375.1|1414371_1414956_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25376.1|1414952_1415627_+|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	58.3	1.0e-62
SQF25377.1|1415696_1416146_-	Rrf2 family protein	NA	NA	NA	NA	NA
SQF25378.1|1416328_1417192_-	alpha/beta hydrolase fold acyltransferase and hydrolase	NA	NA	NA	NA	NA
SQF25379.1|1417178_1418471_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF25380.1|1418659_1419292_-	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
SQF25381.1|1419389_1419848_-	membrane protein	NA	NA	NA	NA	NA
SQF25382.1|1419837_1420074_-	membrane protein	NA	NA	NA	NA	NA
SQF25383.1|1420171_1421014_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.2	2.7e-57
SQF25384.1|1421146_1422103_-	UDP-glucose 4-epimerase	NA	A0A2K9L5H6	Tupanvirus	36.4	2.1e-42
SQF25385.1|1422482_1423967_+|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
SQF25386.1|1424187_1424532_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25387.1|1425568_1425931_-	response regulator	NA	W8CYM9	Bacillus_phage	37.1	5.7e-12
SQF25388.1|1426010_1426466_-	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQF25389.1|1426510_1426723_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25390.1|1426768_1427128_-	Uncharacterised protein	NA	A0A1B0RXA8	Streptococcus_phage	51.3	1.5e-25
SQF25391.1|1427124_1428540_-	SOS responce UmuC protein	NA	Q6DMX4	Streptococcus_phage	72.8	1.2e-198
SQF25392.1|1428718_1429897_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25393.1|1430251_1430524_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25394.1|1430612_1430759_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25395.1|1430916_1434039_-	Type I restriction-modification system restriction subunit	NA	A0A220A398	Liberibacter_phage	23.5	4.6e-25
SQF25396.1|1434072_1435356_-	Restriction endonuclease S subunit	NA	NA	NA	NA	NA
SQF25397.1|1435355_1437920_-	Type I restriction-modification system, DNA-methyltransferase subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	44.9	4.6e-108
SQF25398.1|1439006_1441100_-	glycosyl transferase family protein	NA	A0A1V0SAH6	Catovirus	34.4	2.8e-10
SQF25399.1|1441812_1442073_+|transposase	transposase-like protein	transposase	A0A1P8CWP5	Bacillus_phage	37.6	3.2e-09
SQF25400.1|1442260_1442509_-|transposase	ISSdy1, transposase OrfB	transposase	NA	NA	NA	NA
SQF25401.1|1442559_1442718_-	Mobile element protein	NA	A0A0C5AEB1	Paenibacillus_phage	58.3	7.4e-09
SQF25402.1|1443075_1443366_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	55.1	2.0e-20
SQF25403.1|1443428_1443692_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25404.1|1444224_1444446_+	Growth regulator	NA	NA	NA	NA	NA
SQF25405.1|1444442_1444847_+	prophage maintenance system killer protein	NA	NA	NA	NA	NA
SQF25406.1|1444931_1446188_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	57.1	9.1e-126
SQF25407.1|1446479_1447049_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25408.1|1447307_1447556_-|transposase	ISSdy1, transposase OrfB	transposase	NA	NA	NA	NA
SQF25409.1|1447606_1448008_-	Mobile element protein	NA	A0A0C5AEB1	Paenibacillus_phage	47.7	6.5e-25
SQF25410.1|1448124_1448415_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	55.1	1.6e-20
SQF25411.1|1448797_1449280_+	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF25412.1|1449555_1452735_-	ATP-dependent dsDNA exonuclease	NA	G3MAB6	Bacillus_virus	23.8	1.0e-08
SQF25413.1|1452731_1453940_-	ATP-dependent dsDNA exonuclease	NA	NA	NA	NA	NA
SQF25414.1|1454789_1457870_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	32.3	1.1e-143
SQF25415.1|1457873_1459778_-	Lactose and galactose permease, GPH translocator family	NA	NA	NA	NA	NA
SQF25416.1|1459883_1460930_-	aldose 1-epimerase	NA	NA	NA	NA	NA
SQF25417.1|1460998_1462000_-	UDP-glucose 4-epimerase	NA	A0A2K9L5H6	Tupanvirus	37.0	6.1e-48
SQF25418.1|1462027_1463551_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
SQF25419.1|1463528_1464695_-	galactokinase	NA	NA	NA	NA	NA
SQF25420.1|1464836_1465061_+	galactose operon repressor	NA	NA	NA	NA	NA
SQF25421.1|1465021_1465831_+	galactose operon repressor	NA	C6ZCU4	Enterobacteria_phage	27.7	3.5e-09
SQF25422.1|1466412_1466511_-|transposase	Putative transposase, ISSmu1	transposase	NA	NA	NA	NA
SQF25423.1|1466625_1466814_-|transposase	Putative transposase, ISSmu1	transposase	NA	NA	NA	NA
SQF25424.1|1466986_1468471_-|protease	Zinc metalloprotease zmpB	protease	NA	NA	NA	NA
SQF25425.1|1469281_1469869_-	ABC-type multidrug/protein/lipid transport system, ATPase component	NA	W8CYL7	Bacillus_phage	43.5	3.7e-21
SQF25426.1|1469865_1470138_-	ABC transporter truncated	NA	NA	NA	NA	NA
SQF25427.1|1470828_1473093_+	amino acid ligase	NA	NA	NA	NA	NA
SQF25428.1|1473155_1473794_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25429.1|1473732_1475262_-	Protein of uncharacterised function (DUF3114)	NA	NA	NA	NA	NA
SQF25430.1|1475367_1475688_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQF25431.1|1475930_1477508_-	ABC transport ATP-binding protein/permease	NA	F2Y1V6	Organic_Lake_phycodnavirus	22.5	8.2e-07
SQF25432.1|1477509_1478601_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF25433.1|1478655_1479831_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	31.4	1.0e-30
SQF25434.1|1479910_1480126_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25435.1|1480466_1481321_+	transcriptional regulator RggB	NA	NA	NA	NA	NA
SQF25436.1|1481396_1481669_-|transposase	IS981 transposase B	transposase	NA	NA	NA	NA
SQF25437.1|1481680_1481890_-|transposase	ed transposase	transposase	U5P429	Shigella_phage	44.6	5.0e-05
SQF25438.1|1481956_1482367_-|transposase	IS981 transposase B	transposase	NA	NA	NA	NA
SQF25439.1|1482378_1482639_-|transposase	transposase-like protein	transposase	A0A1P8CWP5	Bacillus_phage	37.6	3.2e-09
SQF25440.1|1482675_1482858_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
SQF25441.1|1483016_1483649_-	pullulanase, type I	NA	NA	NA	NA	NA
SQF25442.1|1483694_1484174_-	pullulanase, type I	NA	NA	NA	NA	NA
SQF25443.1|1484453_1485299_-	pullulanase, type I	NA	NA	NA	NA	NA
SQF25444.1|1485543_1487958_-	cell division protein	NA	S5VNE3	Mycobacterium_phage	50.6	2.3e-85
SQF25445.1|1488110_1489109_-	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	48.4	9.1e-28
SQF25446.1|1489110_1489830_-|tRNA	tRNA (guanine-N1)-methyltransferase	tRNA	NA	NA	NA	NA
SQF25447.1|1489819_1490338_-	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
SQF25448.1|1491007_1491652_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQF25449.1|1491641_1492652_-	putative two-component sensor histidine kinase	NA	NA	NA	NA	NA
SQF25450.1|1492648_1493347_-	membrane protein	NA	NA	NA	NA	NA
SQF25451.1|1494404_1496276_-	protein kinase	NA	A0A1V0SDC3	Indivirus	31.5	6.7e-24
SQF25452.1|1496275_1497013_-	phosphoprotein phosphatase	NA	NA	NA	NA	NA
SQF25453.1|1497056_1498379_-	RNA-binding protein	NA	NA	NA	NA	NA
SQF25454.1|1498368_1499304_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.1	7.3e-11
>prophage 14
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1578830	1586572	2102271		Streptococcus_phage(83.33%)	9	NA	NA
SQF25536.1|1578830_1580783_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.0	2.3e-144
SQF25537.1|1580821_1581391_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF25538.1|1581431_1582127_-	putative effector of murein hydrolase	NA	NA	NA	NA	NA
SQF25539.1|1582119_1582494_-	putative effector of murein hydrolase LrgA	NA	NA	NA	NA	NA
SQF25540.1|1582773_1583127_-	Spx/MgsR family transcriptional regulator	NA	M1PLC0	Streptococcus_phage	63.2	1.3e-37
SQF25541.1|1583161_1583500_-	methylguanine-DNA methyltransferase, truncated	NA	M1PFU9	Streptococcus_phage	45.9	1.1e-20
SQF25542.1|1583711_1584890_-	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	79.1	2.4e-176
SQF25543.1|1584908_1585466_-	GNAT family acetyltransferase	NA	M1PSC3	Streptococcus_phage	57.9	4.1e-54
SQF25544.1|1585477_1586572_-	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	81.0	1.1e-170
>prophage 15
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1606002	1662916	2102271	transposase,tRNA	Streptococcus_phage(27.78%)	59	NA	NA
SQF25568.1|1606002_1606641_-|transposase	transposase for IS660	transposase	A0A1X9I5T2	Streptococcus_phage	71.4	2.6e-84
SQF25569.1|1606831_1607845_-	diacylglycerol kinase catalytic subunit	NA	A0A1V0SBJ0	Catovirus	26.3	4.8e-16
SQF25570.1|1607854_1609801_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.2	3.2e-109
SQF25571.1|1609863_1610373_-	membrane protein	NA	NA	NA	NA	NA
SQF25572.1|1610479_1611406_-|tRNA	tRNA-processing ribonuclease BN	tRNA	NA	NA	NA	NA
SQF25573.1|1611425_1612286_-	methionine aminopeptidase	NA	NA	NA	NA	NA
SQF25574.1|1612329_1613610_-	DRTGG domain-containing protein	NA	NA	NA	NA	NA
SQF25575.1|1613602_1614148_-	acetyltransferase	NA	NA	NA	NA	NA
SQF25576.1|1614329_1615586_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.8	3.1e-126
SQF25577.1|1615626_1616895_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF25578.1|1616980_1619221_-	late competence protein required for DNA uptake	NA	M1PSD2	Streptococcus_phage	60.3	1.2e-56
SQF25579.1|1619210_1619906_-	DNA uptake protein DNA-binding-like protein	NA	NA	NA	NA	NA
SQF25580.1|1620013_1620769_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF25581.1|1620967_1621834_+	putative deacetylase	NA	NA	NA	NA	NA
SQF25582.1|1621883_1622648_+	putative methyltransferase	NA	NA	NA	NA	NA
SQF25583.1|1622651_1622921_+	putative endonuclease containing a URI domain	NA	A0A0C5AS36	Spodoptera_frugiperda_granulovirus	40.7	1.2e-06
SQF25584.1|1623476_1625060_-	ATP-dependent RNA helicase, dead/deah box family	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.7	4.6e-58
SQF25585.1|1625256_1626165_-	cation transporter	NA	NA	NA	NA	NA
SQF25586.1|1626178_1626559_-	superfamily I DNA and RNA helicase	NA	A6N235	Microbacterium_phage	40.6	1.4e-08
SQF25587.1|1626860_1627436_+	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA	NA
SQF25588.1|1627494_1628751_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.6	4.5e-125
SQF25589.1|1629166_1630711_-	regulator of gtfB	NA	A0A1B0RXH7	Streptococcus_phage	27.6	4.1e-35
SQF25590.1|1631060_1631726_-	membrane protein	NA	NA	NA	NA	NA
SQF25591.1|1631814_1633188_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQF25592.1|1633433_1634027_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
SQF25593.1|1633995_1634388_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25594.1|1634338_1634536_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
SQF25595.1|1634773_1635628_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQF25596.1|1635670_1636429_-	amino acid (glutamine) ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.4e-33
SQF25597.1|1636430_1637108_-	amino acid (glutamine) ABC transporter permease	NA	NA	NA	NA	NA
SQF25598.1|1637067_1637748_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQF25599.1|1638189_1639236_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF25600.1|1639396_1639600_-	copper chaperone	NA	NA	NA	NA	NA
SQF25601.1|1639673_1641905_-	copper-transporting P-type ATPase copA (Protein copA)	NA	A0A218MNH6	uncultured_virus	32.6	5.3e-92
SQF25602.1|1641908_1642340_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQF25603.1|1642484_1643267_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
SQF25604.1|1643270_1644479_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
SQF25605.1|1644475_1645057_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
SQF25606.1|1645043_1645811_-	indole-3-glycerol phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	36.2	6.3e-29
SQF25607.1|1645807_1646812_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.3	2.1e-48
SQF25608.1|1646902_1647469_-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	45.1	3.8e-39
SQF25609.1|1647465_1648821_-	anthranilate synthase component I	NA	NA	NA	NA	NA
SQF25610.1|1648897_1649179_-	Chorismate mutase	NA	NA	NA	NA	NA
SQF25611.1|1649773_1650124_-	dihydroorotate dehydrogenase 1	NA	NA	NA	NA	NA
SQF25612.1|1650205_1652566_-	cation transporting ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.3	4.8e-35
SQF25613.1|1652825_1653221_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25614.1|1654166_1654589_+|transposase	ed transposase	transposase	Q6J1X2	Lactobacillus_phage	43.7	3.5e-21
SQF25615.1|1654864_1655476_-	membrane protein	NA	NA	NA	NA	NA
SQF25616.1|1655747_1656062_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25617.1|1656839_1657079_+	transglycosylase	NA	NA	NA	NA	NA
SQF25618.1|1657141_1657390_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25619.1|1657453_1657708_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25620.1|1657719_1657890_+	putative lipoprotein	NA	NA	NA	NA	NA
SQF25621.1|1657904_1658462_+	General stress protein, Gls24 family	NA	NA	NA	NA	NA
SQF25622.1|1658547_1658751_+	CsbD-like protein	NA	NA	NA	NA	NA
SQF25623.1|1659422_1660640_+	glutamate/aspartate-proton symport protein	NA	NA	NA	NA	NA
SQF25624.1|1660659_1661589_+	carboxylate-amine/thiol ligase	NA	NA	NA	NA	NA
SQF25625.1|1661691_1662732_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	34.9	1.0e-29
SQF25626.1|1662709_1662916_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 16
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1676157	1747967	2102271	bacteriocin,integrase,tRNA,transposase,protease	Streptococcus_phage(25.0%)	80	1673229:1673244	1728332:1728347
1673229:1673244	attL	ATAAAGTGGTCATTAA	NA	NA	NA	NA
SQF25645.1|1676157_1677333_-|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	1.9e-32
SQF25646.1|1677805_1679920_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpL	protease	H6X3M6	Enterobacteria_phage	39.3	3.2e-123
SQF25647.1|1680633_1681725_-	putative nucleotidyltransferase	NA	NA	NA	NA	NA
SQF25648.1|1681731_1682478_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SQF25649.1|1682796_1683150_-	iojap family protein	NA	NA	NA	NA	NA
SQF25650.1|1683173_1683764_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
SQF25651.1|1683760_1684393_-	nicotinate nucleotide adenylyltransferase	NA	NA	NA	NA	NA
SQF25652.1|1684497_1684815_-	RNA-binding protein	NA	NA	NA	NA	NA
SQF25653.1|1685053_1686172_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA	NA
SQF25654.1|1686171_1686699_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
SQF25655.1|1686835_1687252_-	drug/metabolite transporter permease	NA	NA	NA	NA	NA
SQF25656.1|1687255_1687750_-	drug/metabolite transporter permease	NA	NA	NA	NA	NA
SQF25657.1|1687817_1688210_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25658.1|1688307_1689750_-|tRNA	glutamyl tRNA-Gln amidotransferase chain B	tRNA	NA	NA	NA	NA
SQF25659.1|1689749_1691216_-|tRNA	glutamyl-tRNA(Gln) amidotransferase, A subunit	tRNA	NA	NA	NA	NA
SQF25660.1|1691215_1691518_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQF25661.1|1692450_1693779_-	6-phospho-beta-glucosidase ascB	NA	NA	NA	NA	NA
SQF25662.1|1694044_1694392_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF25663.1|1694693_1695413_-	ABC transporter substrate binding protein	NA	NA	NA	NA	NA
SQF25664.1|1695535_1696087_-	isochorismatase family protein	NA	G3MA16	Bacillus_virus	39.8	2.9e-23
SQF25665.1|1696149_1696935_-	GTP-sensing transcriptional pleiotropic repressor CodY	NA	NA	NA	NA	NA
SQF25666.1|1697194_1698409_-	class I and II aminotransferase	NA	NA	NA	NA	NA
SQF25667.1|1698762_1699215_+	universal stress family protein	NA	NA	NA	NA	NA
SQF25668.1|1700036_1700645_-	membrane associated protein	NA	NA	NA	NA	NA
SQF25669.1|1700856_1701657_-	pyruvate formate-lyase activating enzyme	NA	NA	NA	NA	NA
SQF25670.1|1702652_1703984_-	magnesium and cobalt efflux protein CorC	NA	NA	NA	NA	NA
SQF25671.1|1704094_1704877_+	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA	NA	W8CYL7	Bacillus_phage	28.1	2.6e-09
SQF25672.1|1705495_1707562_-	Na+/H+ antiporter	NA	NA	NA	NA	NA
SQF25673.1|1707570_1707813_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25674.1|1707809_1708358_-	putative rRNA methylase	NA	A0A2H4PQV0	Staphylococcus_phage	43.5	2.6e-37
SQF25675.1|1708350_1709301_-	radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	49.3	2.5e-35
SQF25676.1|1709385_1710462_-|protease	ATP-dependent protease La	protease	NA	NA	NA	NA
SQF25677.1|1710439_1710937_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	3.7e-14
SQF25678.1|1710970_1711510_-	methyltransferase	NA	NA	NA	NA	NA
SQF25679.1|1711660_1712581_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
SQF25680.1|1712646_1712871_-	thioredoxin	NA	NA	NA	NA	NA
SQF25681.1|1713085_1713829_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.1e-30
SQF25682.1|1713828_1714752_-	polar amino acid ABC uptake transporter membrane-spanning protein	NA	NA	NA	NA	NA
SQF25683.1|1714962_1715793_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA	NA
SQF25684.1|1716373_1716607_-	protein, beta-lactamase/transpeptidase-like predicted	NA	NA	NA	NA	NA
SQF25685.1|1716899_1718003_-	DNA polymerase IV (Pol IV)	NA	NA	NA	NA	NA
SQF25686.1|1718280_1720590_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.1	7.6e-110
SQF25687.1|1720971_1721247_+	carbonate dehydratase	NA	NA	NA	NA	NA
SQF25688.1|1721382_1721637_+	carbonate dehydratase	NA	NA	NA	NA	NA
SQF25689.1|1721654_1722140_+	acetyltransferase	NA	NA	NA	NA	NA
SQF25690.1|1722624_1722816_-	type I restriction-modification system specificty subunit, truncated	NA	NA	NA	NA	NA
SQF25691.1|1722805_1723108_-	plasmid mobilization protein, truncated	NA	NA	NA	NA	NA
SQF25692.1|1723112_1723328_-	plasmid mobilization protein, truncated	NA	NA	NA	NA	NA
SQF25693.1|1723807_1724026_-|integrase	integrase/recombinase plasmid associated	integrase	H0USV4	Bacillus_phage	44.4	6.2e-06
SQF25694.1|1724030_1724402_-|integrase	putative plasmid associated integrase/recombinase	integrase	NA	NA	NA	NA
SQF25695.1|1724489_1725176_-	GdmH	NA	NA	NA	NA	NA
SQF25696.1|1725251_1726007_-	YbbM seven transmembrane helix protein	NA	NA	NA	NA	NA
SQF25697.1|1726003_1726654_-	YbbL ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	8.3e-22
SQF25698.1|1726650_1726881_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25699.1|1726855_1727812_-	ABC transporter ATPase	NA	NA	NA	NA	NA
SQF25700.1|1727811_1728567_-	C3-degrading proteinase	NA	NA	NA	NA	NA
1728332:1728347	attR	TTAATGACCACTTTAT	NA	NA	NA	NA
SQF25701.1|1729409_1730018_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	53.3	2.0e-54
SQF25702.1|1730036_1730666_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	60.1	5.1e-61
SQF25703.1|1730730_1731039_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	90.9	2.2e-09
SQF25704.1|1731317_1732337_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF25705.1|1732343_1733267_-	EamA family transporter	NA	NA	NA	NA	NA
SQF25706.1|1733256_1734021_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25707.1|1734008_1734851_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25708.1|1734837_1735512_-	bifunctional hexulose-6-phosphate synthase/ribonuclease regulator	NA	E3T536	Cafeteria_roenbergensis_virus	26.0	9.9e-10
SQF25709.1|1735498_1736605_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SQF25710.1|1736601_1737363_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25711.1|1737359_1738289_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	24.4	7.0e-14
SQF25712.1|1738974_1739559_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	54.0	8.2e-53
SQF25713.1|1739600_1740185_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.9	8.5e-50
SQF25714.1|1740280_1741144_-	glycerol uptake facilitator protein	NA	M1HJ77	Paramecium_bursaria_Chlorella_virus	29.1	1.6e-17
SQF25715.1|1741264_1743532_+	Xaa-pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
SQF25716.1|1743611_1743992_-|bacteriocin	putative bacteriocin self-immunity protein	bacteriocin	NA	NA	NA	NA
SQF25717.1|1744004_1744115_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25718.1|1744701_1744998_-	Xre-like reg	NA	NA	NA	NA	NA
SQF25719.1|1745162_1746089_-	immunity/modification protein	NA	NA	NA	NA	NA
SQF25720.1|1746275_1746455_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25721.1|1746483_1746876_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25722.1|1746887_1747127_-|bacteriocin	pore-forming peptide bacteriocin	bacteriocin	NA	NA	NA	NA
SQF25723.1|1747323_1747512_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25724.1|1747712_1747967_-|bacteriocin	pore-forming peptide bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 17
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	1838436	2028233	2102271	bacteriocin,protease,transposase,tRNA	Streptococcus_phage(41.3%)	222	NA	NA
SQF25819.1|1838436_1839786_-|transposase	DDE transposase	transposase	NA	NA	NA	NA
SQF25820.1|1840026_1840242_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25821.1|1840276_1841074_-	putative plasmid partition protein	NA	A0A1V0DZZ0	Clostridioides_phage	33.1	2.0e-17
SQF25822.1|1841160_1841745_-	Resolvase	NA	A0A219YA40	Aeromonas_phage	40.9	2.3e-10
SQF25823.1|1842026_1843667_-	relaxase	NA	A0A1B0RXG0	Streptococcus_phage	39.7	7.3e-06
SQF25824.1|1843673_1844045_-	mobilization protein	NA	NA	NA	NA	NA
SQF25825.1|1844248_1844509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25826.1|1844575_1847818_-	putative conjugative transposon membrane protein	NA	NA	NA	NA	NA
SQF25827.1|1847818_1849546_-	DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	31.2	2.1e-40
SQF25828.1|1849547_1849883_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25829.1|1849943_1851785_-	putative conjugal transfer protein	NA	NA	NA	NA	NA
SQF25830.1|1851785_1852325_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25831.1|1852385_1853243_-	Extracellular protein	NA	NA	NA	NA	NA
SQF25832.1|1853311_1854262_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25833.1|1854245_1854506_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25834.1|1854531_1855209_-	parvulin-like peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
SQF25835.1|1855229_1857812_-	peptidase	NA	Q4Z9D9	Staphylococcus_phage	39.0	3.0e-06
SQF25836.1|1857823_1860205_-	conjugal transfer protein	NA	NA	NA	NA	NA
SQF25837.1|1860143_1860500_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25838.1|1860569_1860983_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25839.1|1861027_1861759_-	TrbL/VirB6 plasmid conjugal transfer protein	NA	NA	NA	NA	NA
SQF25840.1|1861780_1862005_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25841.1|1862010_1862325_-|tRNA	seryl-tRNA synthetase-like protein	tRNA	NA	NA	NA	NA
SQF25842.1|1862321_1862660_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25843.1|1863017_1863908_-	IFN-response binding factor 1	NA	A0A286QN66	Streptococcus_phage	39.1	2.5e-16
SQF25844.1|1863908_1864100_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25845.1|1864288_1865179_+	ribonuclease HIII (RNase HIII)	NA	NA	NA	NA	NA
SQF25846.1|1865197_1865821_+	signal peptidase I	NA	NA	NA	NA	NA
SQF25847.1|1865882_1868387_+	RecD/TraA family helicase	NA	A0A0K2FLP8	Brevibacillus_phage	27.9	1.0e-59
SQF25848.1|1868442_1868769_-	Branched-chain amino acid transport protein azlD	NA	NA	NA	NA	NA
SQF25849.1|1868755_1869448_-	amino acid permease	NA	NA	NA	NA	NA
SQF25850.1|1869499_1870513_-	putative O-sialoglycoprotein endopeptidase	NA	A0A0R6PI74	Moraxella_phage	40.1	3.0e-58
SQF25851.1|1870512_1870953_-	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
SQF25852.1|1870927_1871614_-	glycoprotein endopeptidase	NA	NA	NA	NA	NA
SQF25853.1|1871876_1872107_+	Putative transcriptional regulator	NA	NA	NA	NA	NA
SQF25854.1|1872111_1873794_+	metallo-beta-lactamase superfamily protein,putative mRNA degradation ribonucleases J1/J2	NA	NA	NA	NA	NA
SQF25855.1|1874028_1874406_-	Putative hydrolase	NA	NA	NA	NA	NA
SQF25856.1|1874377_1874509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25857.1|1874618_1875962_-	glutamine synthetase	NA	NA	NA	NA	NA
SQF25858.1|1876010_1876385_-	protein GlnR	NA	NA	NA	NA	NA
SQF25859.1|1876557_1877061_-	membrane protein	NA	NA	NA	NA	NA
SQF25860.1|1877305_1877443_+|transposase	truncated IS1193 transposase	transposase	NA	NA	NA	NA
SQF25861.1|1877439_1877646_+|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.9	2.9e-13
SQF25862.1|1878187_1879387_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQF25863.1|1879639_1879888_-|transposase	transposase-like protein	transposase	A0A0P0IQC6	Lactobacillus_phage	41.2	1.7e-07
SQF25864.1|1880002_1880287_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25865.1|1880348_1880636_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25866.1|1880744_1881692_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	48.7	3.4e-40
SQF25867.1|1881709_1882549_+|transposase	transposase for insertion sequence element IS904	transposase	U5P429	Shigella_phage	41.0	1.6e-46
SQF25868.1|1882748_1883759_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF25869.1|1883946_1886028_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	29.0	1.6e-66
SQF25870.1|1886248_1886719_-	SSU ribosomal protein S7p (S5e)	NA	NA	NA	NA	NA
SQF25871.1|1886737_1887151_-	SSU ribosomal protein S12p (S23e)	NA	NA	NA	NA	NA
SQF25872.1|1887367_1888192_-	pur operon repressor	NA	NA	NA	NA	NA
SQF25873.1|1888285_1889227_-	CMP-binding factor	NA	NA	NA	NA	NA
SQF25874.1|1889216_1890491_-	RmuC domain-containing protein	NA	NA	NA	NA	NA
SQF25875.1|1890492_1891125_-	Thiamine pyrophosphokinase	NA	NA	NA	NA	NA
SQF25876.1|1891117_1891777_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQF25877.1|1891784_1892657_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
SQF25878.1|1892913_1893786_-	dimethyladenosine transferase	NA	NA	NA	NA	NA
SQF25879.1|1893930_1894491_-	primase-like protein	NA	NA	NA	NA	NA
SQF25880.1|1894483_1895260_-	deoxyribonuclease yabD	NA	NA	NA	NA	NA
SQF25881.1|1895313_1895745_-	CoA binding protein	NA	NA	NA	NA	NA
SQF25882.1|1895804_1896119_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.2	3.0e-17
SQF25883.1|1896314_1897097_+	protein in Tap1-dppD intergenic region	NA	A0A2H4UW38	Bodo_saltans_virus	35.1	1.8e-23
SQF25884.1|1897311_1897533_-	esterase	NA	NA	NA	NA	NA
SQF25885.1|1897554_1897890_-|bacteriocin	bacteriocin transport accessory protein	bacteriocin	NA	NA	NA	NA
SQF25886.1|1898075_1899329_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	57.3	4.5e-125
SQF25887.1|1904884_1905022_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25888.1|1905133_1906276_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.4	2.7e-84
SQF25889.1|1906528_1907002_-|transposase	transposase-like protein	transposase	NA	NA	NA	NA
SQF25890.1|1907179_1907314_-	LSU ribosomal protein L34p	NA	NA	NA	NA	NA
SQF25891.1|1907814_1907991_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25892.1|1908203_1909253_-	DNA/RNA-binding protein	NA	NA	NA	NA	NA
SQF25893.1|1909264_1910176_-	preprotein translocase subunit YidC	NA	NA	NA	NA	NA
SQF25894.1|1910185_1910521_-	ribonuclease P protein component	NA	NA	NA	NA	NA
SQF25895.1|1910605_1911991_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SQF25896.1|1912319_1913519_-	argininosuccinate synthase	NA	NA	NA	NA	NA
SQF25897.1|1914419_1915874_-|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF25898.1|1916214_1916631_-	oligopeptide ABC transporter substrate-binding protein, truncated	NA	NA	NA	NA	NA
SQF25899.1|1916682_1917720_-	oligopeptide binding protein 3	NA	NA	NA	NA	NA
SQF25900.1|1918205_1918895_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF25901.1|1918994_1919420_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF25902.1|1919591_1919945_+	integral membrane protein	NA	NA	NA	NA	NA
SQF25903.1|1920036_1920534_-	carbonate dehydratase	NA	NA	NA	NA	NA
SQF25904.1|1920648_1920897_-	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQF25905.1|1920890_1921121_-	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQF25906.1|1921254_1921371_-	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQF25907.1|1921459_1922707_-	DNA repair protein	NA	NA	NA	NA	NA
SQF25908.1|1922998_1923445_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q332E8	Clostridium_botulinum_C_phage	50.7	8.5e-34
SQF25909.1|1923658_1923811_+	oxidoreductase, truncated	NA	A0A2P0ZL77	Lactobacillus_phage	62.0	4.0e-12
SQF25910.1|1924034_1924262_+	NADPH-dependent fmn reductase	NA	NA	NA	NA	NA
SQF25911.1|1924280_1925534_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.4	1.2e-53
SQF25912.1|1925909_1926443_+	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
SQF25913.1|1926451_1926742_+	Membrane-bound protein	NA	NA	NA	NA	NA
SQF25914.1|1926806_1927025_+	membrane-bound protein	NA	NA	NA	NA	NA
SQF25915.1|1927139_1928162_+	glycerol-3-phosphate dehydrogenase [NAD(P)+]	NA	NA	NA	NA	NA
SQF25916.1|1928180_1929095_+	UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase)	NA	A0A127AW70	Bacillus_phage	51.5	3.5e-74
SQF25917.1|1929140_1929815_-	peptidase, S54 family	NA	NA	NA	NA	NA
SQF25918.1|1929805_1930333_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SQF25919.1|1930401_1931535_-	aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase	NA	NA	NA	NA	NA
SQF25920.1|1931613_1932312_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SQF25921.1|1932397_1932688_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
SQF25922.1|1932795_1933167_-	Haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
SQF25923.1|1933266_1934100_-	rRNA (guanine-N1-)-methyltransferase	NA	NA	NA	NA	NA
SQF25924.1|1934468_1934636_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
SQF25925.1|1934688_1934952_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25926.1|1935032_1935551_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQF25927.1|1936314_1936707_-	single-strand binding protein	NA	A1EAD1	Streptococcus_phage	48.5	1.5e-26
SQF25928.1|1936912_1937140_-	putative redox protein, regulator of disulfide bond formation	NA	NA	NA	NA	NA
SQF25929.1|1937154_1938186_-	putative transporter component	NA	NA	NA	NA	NA
SQF25930.1|1938323_1938947_-	emap domain protein	NA	NA	NA	NA	NA
SQF25931.1|1938956_1939271_-	thioredoxin	NA	NA	NA	NA	NA
SQF25932.1|1939267_1939552_-	membrane protein	NA	NA	NA	NA	NA
SQF25933.1|1939651_1940719_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
SQF25934.1|1940734_1941505_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.1	2.8e-32
SQF25935.1|1941534_1942197_-|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
SQF25936.1|1942299_1942743_-	membrane protein	NA	NA	NA	NA	NA
SQF25937.1|1942816_1943242_-|protease	CAAX amino protease family protein	protease	NA	NA	NA	NA
SQF25938.1|1943484_1943682_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF25939.1|1943930_1945124_-	acetate kinase	NA	NA	NA	NA	NA
SQF25940.1|1945179_1946136_-	adenine-specific DNA methylase	NA	NA	NA	NA	NA
SQF25941.1|1946180_1946498_-	late competence protein ComGG	NA	NA	NA	NA	NA
SQF25942.1|1946475_1946913_-	competence protein	NA	NA	NA	NA	NA
SQF25943.1|1946896_1947130_-	type II secretory pathway, pseudopilin PulG	NA	NA	NA	NA	NA
SQF25944.1|1947161_1947524_-	pseudouridine synthase	NA	NA	NA	NA	NA
SQF25945.1|1947549_1947876_-	competence protein ComGC	NA	NA	NA	NA	NA
SQF25946.1|1947872_1948736_-	late competence protein ABC transporter subunit	NA	NA	NA	NA	NA
SQF25947.1|1948854_1949796_-	late competence protein, ABC transporter subunit	NA	NA	NA	NA	NA
SQF25948.1|1949876_1950239_-	DNA binding protein	NA	NA	NA	NA	NA
SQF25949.1|1950397_1954036_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.2	2.8e-66
SQF25950.1|1954136_1957718_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	25.4	8.3e-39
SQF25951.1|1958078_1960502_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
SQF25952.1|1960603_1961860_+|tRNA	tyrosyl-tRNA synthetase	tRNA	A0A1S6UA79	Serratia_phage	41.8	1.5e-75
SQF25953.1|1961986_1963009_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
SQF25954.1|1963084_1963561_-	acetolactate synthase 3 regulatory subunit	NA	NA	NA	NA	NA
SQF25955.1|1963553_1965254_-	acetolactate synthase catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	33.0	2.6e-67
SQF25956.1|1965387_1967109_-	dihydroxy-acid dehydratase, truncated	NA	NA	NA	NA	NA
SQF25957.1|1967278_1968946_-	DAK2 domain-containing protein	NA	NA	NA	NA	NA
SQF25958.1|1968945_1969311_-	alkaline-shock protein	NA	NA	NA	NA	NA
SQF25959.1|1969420_1970710_-	MATE efflux family Na(+)/drug antiporter	NA	NA	NA	NA	NA
SQF25960.1|1970767_1972252_-	threonine synthase	NA	NA	NA	NA	NA
SQF25961.1|1972908_1973160_-	aldehyde-alcohol dehydrogenase 2	NA	NA	NA	NA	NA
SQF25962.1|1973436_1973829_-	alcohol-acetaldehyde dehydrogenase, truncated	NA	NA	NA	NA	NA
SQF25963.1|1973881_1974823_-	aldehyde-alcohol dehydrogenase 2	NA	NA	NA	NA	NA
SQF25964.1|1975016_1975412_-	alcohol-acetaldehyde dehydrogenase, truncated	NA	NA	NA	NA	NA
SQF25965.1|1975550_1977446_-	endopeptidase O	NA	A0A1V0SHG2	Klosneuvirus	29.0	3.9e-72
SQF25966.1|1977527_1978250_-	trehalose-6-phosphate hydrolase, truncated	NA	NA	NA	NA	NA
SQF25967.1|1978200_1978656_-	putative trehalose-6-phosphate hydrolase	NA	NA	NA	NA	NA
SQF25968.1|1979093_1979459_-	PTS system trehalose-specific transporter subunit IIBC, truncated	NA	NA	NA	NA	NA
SQF25969.1|1979804_1979963_+	trehalose operon transcriptional repressor	NA	NA	NA	NA	NA
SQF25970.1|1980017_1980515_+	trehalose operon transcriptional regulator truncated	NA	NA	NA	NA	NA
SQF25971.1|1980570_1981131_-	TIGR01440 family protein	NA	NA	NA	NA	NA
SQF25972.1|1981143_1981470_-	membrane protein	NA	NA	NA	NA	NA
SQF25973.1|1981514_1981871_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF25974.1|1982134_1982422_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25975.1|1982451_1982907_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF25976.1|1983573_1984770_-	Mobile element protein	NA	A0A1S5SEW7	Streptococcus_phage	65.9	2.0e-146
SQF25977.1|1984849_1985053_-	putative transposon excisionase	NA	A0A1S5SF07	Streptococcus_phage	79.1	2.5e-25
SQF25978.1|1985442_1985673_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SQF25979.1|1985674_1986028_-	RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA	A0A1S5SEW0	Streptococcus_phage	33.3	1.4e-07
SQF25980.1|1986450_1988574_-	Cadmium-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	64.7	1.2e-247
SQF25981.1|1988794_1989304_+	signal peptidase II	NA	NA	NA	NA	NA
SQF25982.1|1989474_1989810_-	cadmium efflux system accessory protein	NA	NA	NA	NA	NA
SQF25983.1|1989981_1990776_-|transposase	ISSth1, transposase (orf2), IS3 family	transposase	U5P429	Shigella_phage	25.8	2.4e-23
SQF25984.1|1990877_1991126_-|transposase	transposase-like protein	transposase	NA	NA	NA	NA
SQF25985.1|1991188_1992445_-	lantibiotic efflux protein	NA	NA	NA	NA	NA
SQF25986.1|1992474_1992741_-	lantibiotic biosynthesis protein	NA	NA	NA	NA	NA
SQF25987.1|1993045_1994050_+|transposase	IS1198 transposase	transposase	NA	NA	NA	NA
SQF25988.1|1994162_1994297_-|transposase	transposase	transposase	A0A1X9I6E7	Streptococcus_phage	92.7	3.4e-15
SQF25989.1|1994328_1994460_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF25990.1|1994758_1995061_-	Uncharacterised protein	NA	A0A1B0RX98	Streptococcus_phage	55.1	2.8e-20
SQF25991.1|1995050_1995416_-	YolD-like protein	NA	A0A1B0RXA8	Streptococcus_phage	46.1	1.4e-23
SQF25992.1|1995415_1996651_-	SOS responce UmuC protein	NA	M1Q231	Streptococcus_phage	68.8	1.6e-151
SQF25993.1|1996706_1997495_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	54.9	2.1e-75
SQF25994.1|1997810_1997927_-	putative uncharacterized conserved protein	NA	NA	NA	NA	NA
SQF25995.1|1998153_1999035_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQF25996.1|1999451_2000054_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
SQF25997.1|2000115_2000367_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
SQF25998.1|2000606_2000837_-	glutamate--cysteine ligase, truncated	NA	NA	NA	NA	NA
SQF25999.1|2000900_2001026_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF26000.1|2001204_2001672_+|transposase	transposase InsI for insertion sequence element IS30B/C/D	transposase	NA	NA	NA	NA
SQF26001.1|2002085_2002472_-	LSU ribosomal protein L17p	NA	NA	NA	NA	NA
SQF26002.1|2002489_2003428_-	DNA-directed RNA polymerase alpha subunit	NA	NA	NA	NA	NA
SQF26003.1|2003476_2003860_-	SSU ribosomal protein S11p (S14e)	NA	NA	NA	NA	NA
SQF26004.1|2003887_2004253_-	SSU ribosomal protein S13p (S18e)	NA	NA	NA	NA	NA
SQF26005.1|2004270_2004387_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQF26006.1|2004412_2004631_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
SQF26007.1|2004748_2005405_-	adenylate kinase	NA	NA	NA	NA	NA
SQF26008.1|2005536_2006832_-	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
SQF26009.1|2006848_2007289_-	50S ribosomal protein L15	NA	NA	NA	NA	NA
SQF26010.1|2007416_2007599_-	50S ribosomal protein L30	NA	NA	NA	NA	NA
SQF26011.1|2007613_2008108_-	SSU ribosomal protein S5p (S2e)	NA	NA	NA	NA	NA
SQF26012.1|2008126_2008483_-	50S ribosomal protein L18	NA	NA	NA	NA	NA
SQF26013.1|2008572_2009109_-	50S ribosomal protein L6	NA	NA	NA	NA	NA
SQF26014.1|2009235_2009634_-	30S ribosomal protein S8	NA	NA	NA	NA	NA
SQF26015.1|2009756_2009942_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQF26016.1|2009959_2010502_-	LSU ribosomal protein L5p (L11e)	NA	NA	NA	NA	NA
SQF26017.1|2010528_2010834_-	LSU ribosomal protein L24p (L26e)	NA	NA	NA	NA	NA
SQF26018.1|2010914_2011283_-	LSU ribosomal protein L14p (L23e)	NA	NA	NA	NA	NA
SQF26019.1|2011307_2011568_-	SSU ribosomal protein S17p (S11e)	NA	NA	NA	NA	NA
SQF26020.1|2011595_2011802_-	50S ribosomal protein L29	NA	NA	NA	NA	NA
SQF26021.1|2011811_2012225_-	LSU ribosomal protein L16p (L10e)	NA	NA	NA	NA	NA
SQF26022.1|2012228_2012882_-	SSU ribosomal protein S3p (S3e)	NA	NA	NA	NA	NA
SQF26023.1|2012894_2013239_-	LSU ribosomal protein L22p (L17e)	NA	NA	NA	NA	NA
SQF26024.1|2013254_2013533_-	30S ribosomal protein S19	NA	NA	NA	NA	NA
SQF26025.1|2013626_2014460_-	50S ribosomal protein L2	NA	NA	NA	NA	NA
SQF26026.1|2014477_2014774_-	LSU ribosomal protein L23p (L23Ae)	NA	NA	NA	NA	NA
SQF26027.1|2014773_2015397_-	LSU ribosomal protein L4p (L1e)	NA	NA	NA	NA	NA
SQF26028.1|2015421_2016048_-	LSU ribosomal protein L3p (L3e)	NA	NA	NA	NA	NA
SQF26029.1|2016164_2016473_-	SSU ribosomal protein S10p (S20e)	NA	NA	NA	NA	NA
SQF26030.1|2016716_2017718_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	2.0e-06
SQF26031.1|2017799_2019623_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	27.4	1.8e-21
SQF26032.1|2019619_2020030_-	morn motif family protein	NA	NA	NA	NA	NA
SQF26033.1|2020026_2020461_-	low molecular weight protein-tyrosine-phosphatase yfkj	NA	NA	NA	NA	NA
SQF26034.1|2020857_2021277_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	58.3	1.9e-35
SQF26035.1|2021316_2022114_+|transposase	truncated IS1193 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	58.3	2.8e-80
SQF26036.1|2022161_2023454_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	37.6	2.5e-70
SQF26037.1|2023689_2024196_-	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	41.1	1.9e-29
SQF26038.1|2024485_2025655_-	Multidrug-efflux transporter	NA	NA	NA	NA	NA
SQF26039.1|2025647_2026703_-	MccB-like protein	NA	A0A1V0SIK8	Klosneuvirus	29.1	4.5e-09
SQF26040.1|2027144_2028233_+|transposase	IS1191 transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.7	7.4e-31
>prophage 18
LS483339	Streptococcus thermophilus strain NCTC12958 genome assembly, chromosome: 1	2102271	2079806	2091193	2102271		Staphylococcus_phage(25.0%)	12	NA	NA
SQF26102.1|2079806_2080436_-	transglycosylase protein	NA	Q4Z8Z7	Staphylococcus_phage	67.4	4.6e-25
SQF26103.1|2080675_2081230_-	LysM domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	51.0	1.4e-25
SQF26104.1|2081533_2082328_-	cobalt ABC transporter permease CbiQ-like protein	NA	NA	NA	NA	NA
SQF26105.1|2082320_2083163_-	cobalt import ATP-binding protein CbiO 1	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	7.5e-15
SQF26106.1|2083138_2083969_-	cobalt transporter ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	31.2	2.6e-20
SQF26107.1|2083981_2084524_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQF26108.1|2084536_2085394_-	XRE-family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
SQF26109.1|2085452_2086733_-	peptidase	NA	A0A2H4UVM3	Bodo_saltans_virus	29.4	3.3e-06
SQF26110.1|2086734_2087985_-	peptidase M16 inactive domain protein	NA	A0A1X9I714	Streptococcus_phage	40.3	7.0e-94
SQF26111.1|2088062_2088440_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
SQF26112.1|2088442_2089543_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
SQF26113.1|2089711_2091193_-	inositol-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	2.6e-95
