The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	36625	48946	1805495		Synechococcus_phage(28.57%)	8	NA	NA
SQF20568.1|36625_40399_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.4	1.9e-41
SQF20569.1|40519_41974_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.5	1.3e-54
SQF20570.1|42001_43024_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	4.0e-63
SQF20571.1|43191_43746_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
SQF20572.1|43929_45477_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	5.7e-45
SQF20573.1|45534_46659_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.0	8.5e-06
SQF20574.1|46821_48177_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF20575.1|48334_48946_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	90266	106850	1805495	tRNA,integrase	Streptococcus_phage(60.0%)	23	85640:85654	101721:101735
85640:85654	attL	TTTATCAAAAACACA	NA	NA	NA	NA
SQF20622.1|90266_90986_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	26.8	1.3e-15
SQF20623.1|90978_91794_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SQF20624.1|91833_92217_-	HIT domain-containing protein	NA	NA	NA	NA	NA
SQF20625.1|92380_93526_-|integrase	Phage integrase: site-specific recombinase	integrase	A0A1X9I5Y5	Streptococcus_phage	50.0	5.1e-99
SQF20626.1|94852_95620_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF20627.1|95773_95980_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF20628.1|96013_96214_+	phage transcriptional repressor	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
SQF20629.1|96234_96642_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
SQF20630.1|96654_97284_+	phage protein	NA	R9QNB1	Lactococcus_phage	43.0	9.5e-31
SQF20631.1|97528_97870_+	phage protein	NA	NA	NA	NA	NA
SQF20632.1|97856_98078_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20633.1|98080_98272_+	phage protein	NA	NA	NA	NA	NA
SQF20634.1|98283_98613_+	phage protein	NA	NA	NA	NA	NA
SQF20635.1|98615_98888_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF20636.1|98888_99755_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.1	8.0e-121
SQF20637.1|99766_101161_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
SQF20638.1|101453_101708_+	phage protein	NA	NA	NA	NA	NA
SQF20639.1|102056_102566_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	5.5e-29
101721:101735	attR	TTTATCAAAAACACA	NA	NA	NA	NA
SQF20640.1|102639_103128_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	4.0e-45
SQF20641.1|103530_103893_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	30.8	3.5e-06
SQF20642.1|103867_104251_+	phage protein	NA	J7KDQ1	Streptococcus_phage	42.1	1.7e-14
SQF20643.1|104458_105091_+	phage protein	NA	NA	NA	NA	NA
SQF20644.1|105590_106850_-|tRNA	tyrosyl-tRNA synthetase	tRNA	A0A1S6UA79	Serratia_phage	41.0	9.0e-73
>prophage 3
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	200445	253185	1805495	tRNA,integrase,transposase	Bacillus_phage(55.56%)	52	190650:190665	248737:248752
190650:190665	attL	TGGGAAATCAACCCTT	NA	NA	NA	NA
SQF20729.1|200445_201015_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	38.5	2.2e-26
SQF20730.1|201047_201341_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF20731.1|201418_202729_-	membrane protein	NA	NA	NA	NA	NA
SQF20732.1|202952_203825_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF20733.1|204124_204586_-|integrase	integrase core domain protein	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	45.8	6.7e-34
SQF20734.1|204649_204931_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	54.3	1.8e-18
SQF20735.1|204951_205419_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF20736.1|205551_206415_-	membrane protein	NA	NA	NA	NA	NA
SQF20737.1|206632_207775_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.6	1.9e-85
SQF20738.1|207991_208303_+	helper of Tim protein 13	NA	NA	NA	NA	NA
SQF20739.1|208306_208846_+	biotin transporter	NA	NA	NA	NA	NA
SQF20740.1|208985_209765_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQF20741.1|209764_210280_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQF20742.1|210877_212098_-	S-layer protein	NA	NA	NA	NA	NA
SQF20743.1|212509_213214_+	exotoxin G	NA	NA	NA	NA	NA
SQF20744.1|213671_215021_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF20745.1|217565_218237_+	rhomboid family protein	NA	NA	NA	NA	NA
SQF20746.1|218335_219235_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	52.5	5.6e-77
SQF20747.1|219267_220284_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF20748.1|220581_221031_+	marR family protein	NA	NA	NA	NA	NA
SQF20749.1|221023_222730_+	ABC transporter	NA	W8CYL7	Bacillus_phage	27.1	1.8e-36
SQF20750.1|222732_224517_+	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	28.1	3.3e-44
SQF20751.1|224634_225402_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF20752.1|225511_225958_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A1P8BLJ0	Lactococcus_phage	52.8	2.6e-35
SQF20753.1|226038_227400_+	DNA repair protein RadA	NA	NA	NA	NA	NA
SQF20754.1|227588_228086_+	carbonate dehydratase	NA	NA	NA	NA	NA
SQF20755.1|228216_228927_+	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQF20756.1|229108_230554_+|tRNA	glutamyl-tRNA synthetase	tRNA	A0A2K9L481	Tupanvirus	31.2	6.8e-08
SQF20757.1|230948_232295_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	NA	NA	NA	NA	NA
SQF20758.1|232291_233575_+	histidine kinase	NA	NA	NA	NA	NA
SQF20759.1|233581_234319_+	response regulator	NA	NA	NA	NA	NA
SQF20760.1|234858_235218_+	ribonuclease P protein component	NA	NA	NA	NA	NA
SQF20761.1|235201_236011_+	membrane protein oxaA 1 precursor	NA	NA	NA	NA	NA
SQF20762.1|236022_236937_+	jag protein	NA	NA	NA	NA	NA
SQF20763.1|237250_237385_+	LSU ribosomal protein L34p	NA	NA	NA	NA	NA
SQF20764.1|237658_238363_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
SQF20765.1|238411_239731_+	sn-glycerol-3-phosphate-binding periplasmic protein ugpB	NA	NA	NA	NA	NA
SQF20766.1|239833_240721_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA	NA
SQF20767.1|240733_241564_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA	NA
SQF20768.1|241720_242383_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF20769.1|242394_243309_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQF20770.1|243330_244269_+	ROK family protein	NA	NA	NA	NA	NA
SQF20771.1|244379_245210_-	RpiR family transcriptional regulator	NA	NA	NA	NA	NA
SQF20772.1|245494_246286_+	TatD family hydrolase	NA	NA	NA	NA	NA
SQF20773.1|246278_246848_+	ribonuclease M5	NA	NA	NA	NA	NA
SQF20774.1|246961_247834_+	dimethyladenosine transferase	NA	NA	NA	NA	NA
SQF20775.1|248257_249130_+	ribosome-associated GTPase	NA	NA	NA	NA	NA
248737:248752	attR	TGGGAAATCAACCCTT	NA	NA	NA	NA
SQF20776.1|249139_249802_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQF20777.1|249794_250427_+	thiamine pyrophosphokinase	NA	NA	NA	NA	NA
SQF20778.1|250428_251700_+	RmuC family DNA recombination protein	NA	NA	NA	NA	NA
SQF20779.1|251689_252628_+	CMP-binding factor	NA	NA	NA	NA	NA
SQF20780.1|252768_253185_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	357592	363625	1805495		Streptococcus_phage(100.0%)	9	NA	NA
SQF20878.1|357592_358228_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
SQF20879.1|358245_359121_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.6	2.4e-72
SQF20880.1|359139_359379_+	Tpl protein	NA	NA	NA	NA	NA
SQF20881.1|359783_360107_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF20882.1|360111_360975_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	3.8e-115
SQF20883.1|361001_361394_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF20884.1|361440_362070_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF20885.1|362367_362724_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	66.7	4.8e-40
SQF20886.1|362797_363625_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	8.4e-128
>prophage 5
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	371972	418194	1805495	integrase,bacteriocin,tRNA,protease,transposase	Mycobacterium_phage(16.67%)	54	414934:414951	426407:426424
SQF20890.1|371972_373970_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	34.9	4.3e-85
SQF20891.1|374467_375481_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	2.5e-97
SQF20892.1|375484_375973_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF20893.1|375939_378120_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.3	2.5e-171
SQF20894.1|378323_379076_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF20895.1|379534_380017_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF20896.1|380209_380461_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF20897.1|380555_381254_-	phage protein	NA	NA	NA	NA	NA
SQF20898.1|381950_382271_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20899.1|382322_382448_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20900.1|382584_383283_-	exotoxin J	NA	NA	NA	NA	NA
SQF20901.1|383530_384145_-	phage protein	NA	NA	NA	NA	NA
SQF20902.1|384505_384742_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF20903.1|384734_385433_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
SQF20904.1|385508_386468_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF20905.1|386800_388138_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF20906.1|388310_389693_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	2.9e-32
SQF20907.1|389726_390281_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF20908.1|390280_390532_+	membrane protein	NA	NA	NA	NA	NA
SQF20909.1|390550_391246_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF20910.1|391396_391738_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20911.1|391836_392484_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF20912.1|392629_393562_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF20913.1|393625_394351_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF20914.1|394351_395206_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF20915.1|395352_396159_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A1V0S9I2	Catovirus	37.9	3.3e-20
SQF20916.1|396375_398781_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF20917.1|398851_399205_-	integral membrane protein	NA	NA	NA	NA	NA
SQF20918.1|399448_399874_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF20919.1|399979_400669_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF20920.1|400990_401719_+	uridylate kinase	NA	NA	NA	NA	NA
SQF20921.1|401747_402305_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF20922.1|402413_403271_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF20923.1|403343_403853_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF20924.1|403849_404065_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF20925.1|404220_405402_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
SQF20926.1|405715_407488_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF20927.1|407646_408699_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF20928.1|408744_409320_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF20929.1|409478_409976_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF20930.1|409956_410364_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF20931.1|410483_411380_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF20932.1|411400_411877_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF20933.1|412182_412437_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20934.1|412981_413212_+	truncated SilB	NA	NA	NA	NA	NA
SQF20935.1|413707_414418_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
SQF20936.1|414522_414759_-|bacteriocin	bacteriocin processing peptidase	bacteriocin	NA	NA	NA	NA
414934:414951	attL	CATTTCATGATGAAAAAA	NA	NA	NA	NA
SQF20937.1|415056_415281_+	blpU	NA	NA	NA	NA	NA
SQF20938.1|415258_415435_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20939.1|415520_415748_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20940.1|416648_416879_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
SQF20941.1|416927_417245_+	role in replication	NA	NA	NA	NA	NA
SQF20942.1|417310_417592_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF20943.1|417624_418194_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	37.4	7.0e-25
426407:426424	attR	CATTTCATGATGAAAAAA	NA	NA	NA	NA
>prophage 6
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	652672	663275	1805495		Streptococcus_phage(57.14%)	9	NA	NA
SQF21157.1|652672_654883_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
SQF21158.1|654990_656154_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.4	5.3e-144
SQF21159.1|656150_656837_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF21160.1|656930_658097_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.5	2.9e-33
SQF21161.1|658157_658499_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF21162.1|658719_660072_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.3e-29
SQF21163.1|660159_661428_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF21164.1|661457_661898_-	membrane protein	NA	NA	NA	NA	NA
SQF21165.1|662132_663275_+	aminotransferase class-V family protein	NA	H7BUW1	unidentified_phage	32.6	3.2e-16
>prophage 7
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	690241	726571	1805495	tRNA,protease,head,transposase	Bacillus_phage(25.0%)	34	NA	NA
SQF21191.1|690241_690973_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF21192.1|690972_691965_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF21193.1|692142_693201_+	regulatory protein	NA	NA	NA	NA	NA
SQF21194.1|693213_694137_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF21195.1|694437_695106_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQF21196.1|695102_696014_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF21197.1|696010_697957_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF21198.1|698055_698649_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
SQF21199.1|698799_699507_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	6.5e-12
SQF21200.1|699662_699782_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
SQF21201.1|700463_701489_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF21202.1|701973_702150_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF21203.1|702377_702758_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF21204.1|702757_703606_+	degV family protein	NA	NA	NA	NA	NA
SQF21205.1|703730_704939_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
SQF21206.1|704935_706813_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	4.3e-63
SQF21207.1|707704_708115_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF21208.1|708196_710209_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF21209.1|710428_711079_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF21210.1|711081_711750_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF21211.1|711758_712991_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF21212.1|713284_714163_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF21213.1|714144_715089_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF21214.1|715081_716089_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF21215.1|716081_717071_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF21216.1|717300_718578_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF21217.1|718564_719740_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF21218.1|719948_720788_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF21219.1|720867_721365_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF21220.1|721384_721555_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF21221.1|721684_722914_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF21222.1|722923_723523_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF21223.1|723670_724414_+	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF21224.1|724471_726571_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.4	6.6e-121
>prophage 8
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	750203	758155	1805495	transposase	Streptococcus_phage(66.67%)	10	NA	NA
SQF21247.1|750203_751208_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.8	7.4e-62
SQF21248.1|751312_752089_-	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
SQF21249.1|752114_752585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21250.1|752644_753388_-	Phage transcriptional repressor	NA	J7KJ52	Streptococcus_phage	58.3	1.1e-70
SQF21251.1|753734_754526_-	phage protein	NA	A0A1S5SAN8	Streptococcus_phage	36.8	3.6e-35
SQF21252.1|754581_754833_+	phage protein	NA	A0A141E1R7	Streptococcus_phage	56.0	1.0e-12
SQF21253.1|754819_755077_-	Uncharacterised protein	NA	M1PRU3	Streptococcus_phage	61.1	2.4e-09
SQF21254.1|755383_755680_+	enterotoxin	NA	NA	NA	NA	NA
SQF21255.1|755703_755835_+	exotoxin H precursor	NA	NA	NA	NA	NA
SQF21256.1|757399_758155_-	SpeA variant	NA	A0A097PAT7	Streptococcus_pyogenes_phage	89.2	2.9e-127
>prophage 9
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	1058995	1102637	1805495	tRNA,integrase,transposase	Enterococcus_phage(25.0%)	41	1063017:1063076	1102287:1102668
SQF21542.1|1058995_1059463_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF21543.1|1059483_1059765_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	54.3	1.8e-18
SQF21544.1|1059828_1060290_+|integrase	integrase core domain protein	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	45.8	6.7e-34
SQF21545.1|1060589_1061462_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF21546.1|1061685_1062996_+	membrane protein	NA	NA	NA	NA	NA
1063017:1063076	attL	TTGGACTTGGTATACTAAAGTAGACACAAAATTAAGTGGAAACGAGGAAAAGTTATTATG	NA	NA	NA	NA
SQF21547.1|1063073_1063367_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF21548.1|1063399_1064122_+|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	40.6	2.7e-37
SQF21549.1|1064138_1064870_-	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQF21550.1|1064983_1065349_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQF21551.1|1065468_1066689_-	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQF21552.1|1067062_1068547_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF21553.1|1068548_1068956_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQF21554.1|1069040_1069553_-	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	97.6	9.2e-93
SQF21555.1|1069857_1071213_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.9	3.3e-254
SQF21556.1|1071294_1072746_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQF21557.1|1072953_1073445_-	shikimate kinase	NA	NA	NA	NA	NA
SQF21558.1|1073437_1074721_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF21559.1|1074831_1075797_-	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQF21560.1|1075798_1076659_-	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQF21561.1|1076674_1077958_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQF21562.1|1077966_1078509_-	acetyltransferase family protein	NA	NA	NA	NA	NA
SQF21563.1|1078746_1079025_-	Protein G-related alpha 2 macroglobulin-binding protein GraB	NA	NA	NA	NA	NA
SQF21564.1|1079506_1080766_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF21565.1|1080939_1082136_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQF21566.1|1082673_1085040_-	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQF21567.1|1085243_1086185_+	biotin-protein ligase	NA	NA	NA	NA	NA
SQF21568.1|1086458_1088129_-	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.6e-47
SQF21569.1|1088128_1088626_-	GAF domain-containing protein	NA	NA	NA	NA	NA
SQF21570.1|1088770_1089580_+	membrane protein	NA	NA	NA	NA	NA
SQF21571.1|1089632_1089896_-	membrane protein	NA	NA	NA	NA	NA
SQF21572.1|1089975_1090602_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQF21573.1|1090699_1091785_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.9	7.8e-33
SQF21574.1|1091895_1093170_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQF21575.1|1093264_1094692_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF21576.1|1094876_1096610_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQF21577.1|1096614_1096878_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQF21578.1|1097270_1097489_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQF21579.1|1097508_1099668_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	64.0	8.6e-265
SQF21580.1|1100000_1100960_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQF21581.1|1100934_1102248_+	chloride channel protein	NA	NA	NA	NA	NA
SQF21582.1|1102343_1102637_+|transposase	transposase	transposase	NA	NA	NA	NA
1102287:1102668	attR	TTGGACTTGGTATACTAAAGTAGACACAAAATTAAGTGGAAACGAGGAAAAGTTATTATGCCAAGAAAAACCTTTGATAAAGCCTTCAAACTCTCTGCTGTAAAACTCATCCTTGAGGAAGAGCAGCCTGTAAAAATGGTTAGTTCAACTTTAAAAATTCATCCCAATAGTCTTTATCAATGGATTCAAGAATATGAAAAATATGGAGAAAGTGCGTTCCCAGGACATGGGAGCGCACTTCGTCATGCTCAATTTGAGATAAAAAAACTTGAAAAAGAGAACAAACTGCTACAGGAGGAATTAGCTCTTCTAAAAAAGTTCCAGGTCTTTTTGAAGCCAAACCGGAAATAAAATTTCAGTTTCTGAAGGAAAATAGTGTTAG	NA	NA	NA	NA
>prophage 10
LS483337	Streptococcus pyogenes strain NCTC12047 genome assembly, chromosome: 1	1805495	1442863	1512987	1805495	portal,terminase,holin,tRNA,integrase,tail	Streptococcus_phage(31.94%)	103	1461720:1461743	1509202:1509225
SQF21892.1|1442863_1443172_-|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQF21893.1|1443328_1444231_+	ribonuclease HIII	NA	NA	NA	NA	NA
SQF21894.1|1444241_1444835_+	signal peptidase I	NA	NA	NA	NA	NA
SQF21895.1|1444892_1447346_+	Exodeoxyribonuclease V alpha chain	NA	U5J9B0	Bacillus_phage	28.6	1.9e-58
SQF21896.1|1447436_1447919_+	membrane protein	NA	NA	NA	NA	NA
SQF21897.1|1448011_1449106_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQF21898.1|1449314_1451642_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	33.4	4.2e-116
SQF21899.1|1451820_1452759_-	beta-lactamase family protein	NA	NA	NA	NA	NA
SQF21900.1|1452755_1453508_-	C3-degrading proteinase	NA	NA	NA	NA	NA
SQF21901.1|1453805_1454702_+	sodium:solute symporter	NA	NA	NA	NA	NA
SQF21902.1|1455037_1455886_-	glycerol uptake permease	NA	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	33.3	1.9e-26
SQF21903.1|1456357_1457554_-	quinolone MFS transporter	NA	NA	NA	NA	NA
SQF21904.1|1457659_1458379_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
SQF21905.1|1458400_1460683_+	xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
SQF21906.1|1460762_1460984_-	helix-turn-helix family protein	NA	A0A1W6JP54	Staphylococcus_phage	41.2	4.8e-06
SQF21907.1|1461153_1461528_+	Transcriptional regulator	NA	A0A097BY95	Leuconostoc_phage	51.6	2.7e-17
1461720:1461743	attL	TATGATGAATATGCAAAACATGAT	NA	NA	NA	NA
SQF21908.1|1461872_1462052_-	Paratox	NA	A3F673	Streptococcus_phage	75.9	6.4e-17
SQF21909.1|1462289_1463090_+	streptodornase	NA	NA	NA	NA	NA
SQF21910.1|1463469_1463796_+	phage membrane protein	NA	NA	NA	NA	NA
SQF21911.1|1463845_1464712_-	phage protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
SQF21912.1|1464699_1465224_-	phage protein	NA	Q938J3	Temperate_phage	99.4	1.2e-98
SQF21913.1|1465363_1466572_-	phage-associated cell wall hydrolase	NA	Q938J4	Temperate_phage	85.6	1.5e-210
SQF21914.1|1466568_1466679_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.2	1.8e-09
SQF21915.1|1466687_1466915_-|holin	prophage LambdaSa03, holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQF21916.1|1466911_1467187_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF21917.1|1467196_1467814_-	phage protein	NA	Q938J7	Temperate_phage	86.3	1.0e-74
SQF21918.1|1467816_1467978_-	phage protein	NA	NA	NA	NA	NA
SQF21919.1|1467991_1469362_-	phage protein	NA	Q938J9	Temperate_phage	59.2	3.5e-62
SQF21920.1|1469354_1469891_-	Phage infection protein	NA	Q938J9	Temperate_phage	77.8	3.7e-68
SQF21921.1|1469906_1470911_-	hyaluronidase	NA	Q938K0	Temperate_phage	60.3	1.9e-102
SQF21922.1|1470907_1472959_-	phage protein	NA	A3F656	Streptococcus_phage	85.2	0.0e+00
SQF21923.1|1472955_1473735_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
SQF21924.1|1473767_1477403_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQF21925.1|1477417_1477747_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
SQF21926.1|1477788_1478148_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.5	2.5e-20
SQF21927.1|1478200_1478809_-|tail	Major tail protein	tail	D7RWD5	Brochothrix_phage	51.4	9.8e-41
SQF21928.1|1478863_1479253_-	phage protein	NA	B5SP36	Lactococcus_phage	66.7	2.3e-43
SQF21929.1|1479249_1479606_-	phage protein	NA	A0A097BY98	Enterococcus_phage	45.5	6.3e-16
SQF21930.1|1479595_1479904_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	41.2	3.3e-13
SQF21931.1|1479900_1480254_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF21932.1|1480267_1480510_-	phage protein	NA	NA	NA	NA	NA
SQF21933.1|1480519_1481602_-	phage protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	57.1	4.5e-105
SQF21934.1|1481604_1481985_-	phage protein	NA	A0A0K2CNR0	Brevibacillus_phage	32.5	2.4e-05
SQF21935.1|1481994_1482528_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQF21936.1|1482671_1482938_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.7	1.0e-26
SQF21937.1|1482940_1483255_-	phage protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
SQF21938.1|1483324_1483510_-	phage protein	NA	NA	NA	NA	NA
SQF21939.1|1483513_1485076_-	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	2.5e-48
SQF21940.1|1485056_1486559_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
SQF21941.1|1486570_1487860_-|terminase	terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	2.2e-183
SQF21942.1|1487837_1488320_-|terminase	phage terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
SQF21943.1|1489151_1489592_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	100.0	5.0e-79
SQF21944.1|1489864_1490035_-	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	96.3	3.5e-25
SQF21945.1|1490031_1490358_-	phage protein	NA	Q938L9	Temperate_phage	61.2	1.5e-27
SQF21946.1|1490323_1490545_-	phage protein	NA	Q938L9	Temperate_phage	97.2	1.6e-33
SQF21947.1|1490541_1490835_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	97.9	8.0e-49
SQF21948.1|1490831_1491017_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQF21949.1|1491114_1491600_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	3.6e-94
SQF21950.1|1491603_1491888_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
SQF21951.1|1491884_1492289_-	phage protein	NA	Q938M1	Temperate_phage	94.0	3.4e-66
SQF21952.1|1492272_1492560_-	phage protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
SQF21953.1|1492559_1492805_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	98.8	6.7e-41
SQF21954.1|1492801_1493158_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	98.3	5.5e-60
SQF21955.1|1493154_1493595_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
SQF21956.1|1493803_1494229_-	single-stranded DNA-binding protein ssb	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
SQF21957.1|1494221_1494896_-	Recombination protein	NA	A0A097PBE8	Streptococcus_pyogenes_phage	99.1	7.6e-119
SQF21958.1|1494896_1495379_-	phage protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
SQF21959.1|1495400_1495655_-	phage protein	NA	Q938N0	Temperate_phage	96.4	1.8e-41
SQF21960.1|1495641_1495989_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	47.7	4.6e-11
SQF21961.1|1496001_1496139_-	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQF21962.1|1496129_1496912_-	DNA replication protein DnaC	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	98.1	2.7e-144
SQF21963.1|1496898_1497702_-	DNA replication protein DnaC	NA	A0A2P0VI76	Streptococcus_phage	53.8	2.4e-63
SQF21964.1|1497817_1498261_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21965.1|1498316_1498697_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21966.1|1498686_1498959_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21967.1|1499131_1499311_-	Uncharacterised protein	NA	A0A1X9I5M8	Streptococcus_phage	65.5	1.2e-12
SQF21968.1|1499441_1499576_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	95.5	9.6e-18
SQF21969.1|1499723_1499837_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21970.1|1499857_1500217_-	Uncharacterised protein	NA	Q9AZZ9	Lactococcus_phage	50.0	2.2e-08
SQF21971.1|1500290_1500548_-	Uncharacterised protein	NA	X2KPF2	Streptococcus_phage	36.8	3.3e-06
SQF21972.1|1500750_1501092_-	phage protein	NA	NA	NA	NA	NA
SQF21973.1|1501166_1501367_+	phage protein	NA	A0A1S5S8T9	Streptococcus_phage	75.4	3.3e-22
SQF21974.1|1501363_1501513_-	phage protein	NA	Q938N4	Temperate_phage	98.0	2.3e-20
SQF21975.1|1501544_1502309_-	P1-type antirepressor	NA	Q938N5	Temperate_phage	81.8	1.7e-111
SQF21976.1|1502305_1502494_-	putative cro protein	NA	A0A0B5A7F0	Streptococcus_phage	65.6	1.8e-14
SQF21977.1|1502554_1502968_+	phage protein	NA	NA	NA	NA	NA
SQF21978.1|1503140_1503902_-	Antirepressor	NA	Q6SEF4	Lactobacillus_prophage	63.2	3.3e-86
SQF21979.1|1504068_1504341_+	phage protein	NA	NA	NA	NA	NA
SQF21980.1|1504329_1504530_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21981.1|1504565_1504781_-	XRE family transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
SQF21982.1|1504854_1505082_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21983.1|1505197_1505977_+	Uncharacterised protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
SQF21984.1|1505912_1506077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21985.1|1506110_1506269_-	Uncharacterised protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
SQF21986.1|1506364_1506466_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF21987.1|1506632_1507391_+	Repressor protein	NA	J7KJ52	Streptococcus_phage	88.0	1.2e-120
SQF21988.1|1507463_1507886_+	Lj965 prophage superinfection immunity protein	NA	NA	NA	NA	NA
SQF21989.1|1508006_1509143_+|integrase	Prophage NZ131.3 integrase	integrase	A0A1B1IMP1	Lactococcus_phage	35.4	3.7e-57
SQF21990.1|1509202_1509502_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
1509202:1509225	attR	TATGATGAATATGCAAAACATGAT	NA	NA	NA	NA
SQF21991.1|1509558_1510296_-	transcriptional regulator, MerR family	NA	NA	NA	NA	NA
SQF21992.1|1510448_1511036_-	DNA polymerase III subunit epsilon	NA	A0A0A8WJ41	Clostridium_phage	28.3	9.2e-12
SQF21993.1|1511084_1511615_-	DNA-binding protein	NA	NA	NA	NA	NA
SQF21994.1|1511817_1512987_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	tRNA	A0A2H4PQX1	Staphylococcus_phage	53.0	5.5e-16
