The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	36565	48927	1875632		Synechococcus_phage(28.57%)	8	NA	NA
SQF18694.1|36565_40339_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.8	2.1e-40
SQF18695.1|40499_41954_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	1.7e-54
SQF18696.1|41981_43004_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	42.1	3.1e-63
SQF18697.1|43171_43726_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
SQF18698.1|43909_45457_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.9	2.6e-45
SQF18699.1|45515_46640_-	bacterial SH3 domain protein	NA	A0A1S5PRY3	Streptococcus_phage	33.1	7.7e-07
SQF18700.1|46802_48158_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF18701.1|48315_48927_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	6.8e-18
>prophage 2
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	183952	239067	1875632	transposase,tRNA,integrase	Bacillus_phage(55.56%)	55	174420:174435	233854:233869
174420:174435	attL	TGGGAAATCAACCCTT	NA	NA	NA	NA
SQF18831.1|183952_184777_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	40.9	3.8e-48
SQF18832.1|184809_185103_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18833.1|185180_186209_-	membrane protein	NA	NA	NA	NA	NA
SQF18834.1|186205_186493_-	membrane protein	NA	NA	NA	NA	NA
SQF18835.1|186716_187589_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF18836.1|187943_188696_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	47.9	1.9e-54
SQF18837.1|188716_189241_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18838.1|189325_190189_-	membrane protein	NA	NA	NA	NA	NA
SQF18839.1|190406_191549_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.9e-86
SQF18840.1|191766_192078_+	helper of Tim protein 13	NA	NA	NA	NA	NA
SQF18841.1|192081_192621_+	biotin transporter	NA	NA	NA	NA	NA
SQF18842.1|192760_193540_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
SQF18843.1|193539_194055_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SQF18844.1|194668_195889_-	S-layer protein	NA	NA	NA	NA	NA
SQF18845.1|196300_197005_+	exotoxin G	NA	NA	NA	NA	NA
SQF18846.1|197461_198811_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF18847.1|200972_201104_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF18848.1|201355_202027_+	rhomboid family protein	NA	NA	NA	NA	NA
SQF18849.1|202125_203025_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	52.2	9.6e-77
SQF18850.1|203057_204074_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQF18851.1|204134_204236_-	hupothetical protein	NA	NA	NA	NA	NA
SQF18852.1|204240_205374_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF18853.1|205697_206147_+	marR family protein	NA	NA	NA	NA	NA
SQF18854.1|206139_207846_+	ABC transporter	NA	W8CYL7	Bacillus_phage	27.1	1.4e-36
SQF18855.1|207848_209633_+	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	28.1	3.3e-44
SQF18856.1|209750_210518_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF18857.1|210627_211074_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A1P8BLJ0	Lactococcus_phage	52.8	4.5e-35
SQF18858.1|211154_212516_+	DNA repair protein RadA	NA	NA	NA	NA	NA
SQF18859.1|212704_213202_+	carbonate dehydratase	NA	NA	NA	NA	NA
SQF18860.1|213332_214043_+	HTH DNA-binding protein	NA	NA	NA	NA	NA
SQF18861.1|214224_215670_+|tRNA	glutamyl-tRNA synthetase	tRNA	A0A2K9L481	Tupanvirus	31.2	6.8e-08
SQF18862.1|216064_217411_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	NA	NA	NA	NA	NA
SQF18863.1|217407_218691_+	histidine kinase	NA	NA	NA	NA	NA
SQF18864.1|218697_219435_+	response regulator	NA	NA	NA	NA	NA
SQF18865.1|219974_220334_+	ribonuclease P protein component	NA	NA	NA	NA	NA
SQF18866.1|220317_221127_+	membrane protein oxaA 1 precursor	NA	NA	NA	NA	NA
SQF18867.1|221138_222053_+	jag protein	NA	NA	NA	NA	NA
SQF18868.1|222367_222502_+	LSU ribosomal protein L34p	NA	NA	NA	NA	NA
SQF18869.1|222775_223480_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
SQF18870.1|223528_224848_+	sn-glycerol-3-phosphate-binding periplasmic protein ugpB	NA	NA	NA	NA	NA
SQF18871.1|224875_225838_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA	NA
SQF18872.1|225850_226681_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA	NA
SQF18873.1|226837_227500_+	membrane protein	NA	NA	NA	NA	NA
SQF18874.1|227511_228426_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
SQF18875.1|228447_229386_+	ROK family protein	NA	NA	NA	NA	NA
SQF18876.1|229496_230327_-	RpiR family transcriptional regulator	NA	NA	NA	NA	NA
SQF18877.1|230611_231403_+	TatD family hydrolase	NA	NA	NA	NA	NA
SQF18878.1|231395_231965_+	ribonuclease M5	NA	NA	NA	NA	NA
SQF18879.1|232078_232951_+	dimethyladenosine transferase	NA	NA	NA	NA	NA
SQF18880.1|233374_234247_+	ribosome-associated GTPase	NA	NA	NA	NA	NA
233854:233869	attR	TGGGAAATCAACCCTT	NA	NA	NA	NA
SQF18881.1|234256_234919_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQF18882.1|234911_235544_+	thiamine pyrophosphokinase	NA	NA	NA	NA	NA
SQF18883.1|235545_236817_+	RmuC family DNA recombination protein	NA	NA	NA	NA	NA
SQF18884.1|236806_237745_+	CMP-binding factor	NA	NA	NA	NA	NA
SQF18885.1|238023_239067_+|transposase	transposase	transposase	H7BW61	unidentified_phage	34.6	5.4e-31
>prophage 3
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	343065	349099	1875632		Streptococcus_phage(100.0%)	9	NA	NA
SQF18981.1|343065_343701_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
SQF18982.1|343718_344594_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.9	4.5e-71
SQF18983.1|344612_344852_+	Tpl protein	NA	NA	NA	NA	NA
SQF18984.1|345256_345580_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQF18985.1|345584_346448_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQF18986.1|346474_346867_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF18987.1|346913_347543_-	copper homeostasis protein	NA	NA	NA	NA	NA
SQF18988.1|347841_348198_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
SQF18989.1|348271_349099_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.3	4.5e-129
>prophage 4
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	357436	399916	1875632	bacteriocin,tRNA,protease,transposase	Mycobacterium_phage(15.38%)	48	NA	NA
SQF18993.1|357436_359434_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	3.9e-86
SQF18994.1|359927_360941_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	5.5e-97
SQF18995.1|360944_361433_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.0e-11
SQF18996.1|361399_363580_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.3	6.6e-172
SQF18997.1|363785_364538_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF18998.1|365004_365355_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF18999.1|365784_366210_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF19000.1|366478_367042_-|transposase	transposase DDE domain protein	transposase	A0A1X9I5T2	Streptococcus_phage	91.2	2.7e-85
SQF19001.1|367019_367679_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	90.8	1.9e-114
SQF19002.1|368146_368572_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF19003.1|368688_369096_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19004.1|369225_369477_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF19005.1|369570_370302_-	phage protein	NA	NA	NA	NA	NA
SQF19006.1|370660_370897_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF19007.1|370889_371588_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.8	7.8e-10
SQF19008.1|371663_372623_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF19009.1|372955_374293_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF19010.1|374464_375847_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.4	3.8e-32
SQF19011.1|375877_376432_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF19012.1|376431_376683_+	membrane protein	NA	NA	NA	NA	NA
SQF19013.1|376702_377398_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF19014.1|377548_377890_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19015.1|377988_378636_-	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF19016.1|378781_379714_+	manganese-binding protein	NA	NA	NA	NA	NA
SQF19017.1|379777_380503_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	2.4e-17
SQF19018.1|380503_381358_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF19019.1|381505_382312_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF19020.1|382528_384934_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	2.9e-88
SQF19021.1|385003_385357_-	integral membrane protein	NA	NA	NA	NA	NA
SQF19022.1|385600_386026_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF19023.1|386131_386821_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF19024.1|387142_387871_+	uridylate kinase	NA	NA	NA	NA	NA
SQF19025.1|387899_388457_+	ribosome recycling factor	NA	NA	NA	NA	NA
SQF19026.1|388565_389423_+	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF19027.1|389495_390005_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF19028.1|390001_390217_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF19029.1|390372_391554_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
SQF19030.1|391869_393642_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF19031.1|393800_394853_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF19032.1|394898_395474_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF19033.1|395632_396130_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQF19034.1|396110_396518_+	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF19035.1|396637_397534_+	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF19036.1|397553_398030_+	phosphohydrolase	NA	NA	NA	NA	NA
SQF19037.1|398334_398589_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19038.1|398986_399232_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF19039.1|399246_399429_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF19040.1|399766_399916_-|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
>prophage 5
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	501222	565014	1875632	bacteriocin,tRNA,transposase	Streptococcus_phage(50.0%)	51	NA	NA
SQF19139.1|501222_502356_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19140.1|502360_502489_+	exfoliative toxin	NA	NA	NA	NA	NA
SQF19141.1|502650_505332_+	cation transporting ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.8	1.1e-67
SQF19142.1|505415_506411_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF19144.1|506474_508382_-	oligohyaluronate lyase	NA	NA	NA	NA	NA
SQF19146.1|508468_509290_-	PTS system N-acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
SQF19148.1|509276_510059_-	PTS system N-acetylgalactosamine-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF19151.1|510077_510566_-	PTS system protein	NA	NA	NA	NA	NA
SQF19153.1|510601_511801_-	unsaturated glucuronyl hydrolase	NA	NA	NA	NA	NA
SQF19154.1|511800_512238_-	PTS system N-acetylgalactosamine-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF19156.1|512571_513366_+	gluconate 5-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.9	2.3e-18
SQF19158.1|513390_514032_+	galactose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF19160.1|514060_515062_+	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA	NA
SQF19162.1|515066_515702_+	ketohydroxyglutarate aldolase	NA	NA	NA	NA	NA
SQF19164.1|515998_516649_+	HAD family hydrolase	NA	A0A1D8KNV9	Synechococcus_phage	29.2	7.0e-13
SQF19166.1|517346_518471_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
SQF19168.1|518657_519638_+	peptide chain release factor 2	NA	NA	NA	NA	NA
SQF19170.1|519656_520349_+	cell division ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
SQF19172.1|520341_521271_+	cell division protein FtsX	NA	NA	NA	NA	NA
SQF19174.1|521580_522216_-	Hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	63.3	1.9e-79
SQF19176.1|522446_523211_+	acetoin reductase	NA	NA	NA	NA	NA
SQF19178.1|523407_524541_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19181.1|524545_524635_+	exfoliative toxin	NA	NA	NA	NA	NA
SQF19183.1|524686_527146_+	helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	48.1	9.6e-204
SQF19185.1|527481_528675_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SQF19187.1|528695_530042_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
SQF19189.1|530456_531347_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
SQF19191.1|531343_532321_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
SQF19193.1|532317_533229_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.7	1.3e-105
SQF19195.1|533361_534759_+	dipeptidase	NA	NA	NA	NA	NA
SQF19197.1|534910_536458_+	high-affinity zinc uptake system protein	NA	NA	NA	NA	NA
SQF19199.1|536605_537328_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQF19201.1|537347_538547_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQF19203.1|538643_538904_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQF19205.1|539018_539960_-	DHH family protein	NA	NA	NA	NA	NA
SQF19207.1|540353_540803_+	flavodoxin	NA	NA	NA	NA	NA
SQF19209.1|540977_541262_+	chorismate mutase	NA	NA	NA	NA	NA
SQF19211.1|541254_542517_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.3	6.4e-95
SQF19213.1|542631_542979_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
SQF19216.1|543033_544113_-|transposase	transposase	transposase	H7BW61	unidentified_phage	34.6	5.6e-31
SQF19218.1|545079_545649_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA	NA
SQF19220.1|545649_547602_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	46.3	8.9e-144
SQF19222.1|547969_549694_+	septation ring formation regulator	NA	NA	NA	NA	NA
SQF19224.1|549825_550284_-	hypothetical cytosolic protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
SQF19226.1|550516_551824_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
SQF19228.1|552297_552987_-|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	80.3	1.1e-96
SQF19231.1|553595_555137_-	MgaA-like transcriptional regulator	NA	NA	NA	NA	NA
SQF19233.1|555608_561761_+	putative extracellular matrix binding protein Epf	NA	NA	NA	NA	NA
SQF19234.1|562625_562787_+|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF19236.1|563008_563959_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF19238.1|563955_565014_+|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
>prophage 6
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	628281	638884	1875632		Streptococcus_phage(57.14%)	9	NA	NA
SQF19327.1|628281_630492_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
SQF19328.1|630599_631763_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	2.6e-143
SQF19329.1|631759_632446_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF19330.1|632539_633706_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF19331.1|633766_634108_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
SQF19332.1|634328_635681_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.4	3.1e-31
SQF19333.1|635768_637037_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF19334.1|637066_637507_-	membrane protein	NA	NA	NA	NA	NA
SQF19335.1|637741_638884_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	29.1	8.0e-28
>prophage 7
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	645521	699844	1875632	head,tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
SQF19344.1|645521_646655_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19345.1|646944_647466_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
SQF19346.1|647481_648741_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	37.8	7.6e-64
SQF19347.1|648750_649737_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.2e-25
SQF19348.1|649780_650863_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
SQF19349.1|651108_654285_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SQF19350.1|654491_655763_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
SQF19351.1|655762_656473_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	1.7e-36
SQF19352.1|656484_657705_+	permease family protein	NA	NA	NA	NA	NA
SQF19353.1|657958_659692_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
SQF19354.1|659818_660091_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQF19355.1|660100_660340_+	RNA binding protein	NA	NA	NA	NA	NA
SQF19356.1|661271_664298_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
SQF19357.1|664317_664719_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
SQF19358.1|664898_665774_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
SQF19359.1|665909_666431_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
SQF19360.1|666645_667164_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
SQF19361.1|667153_667885_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQF19362.1|667884_668877_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
SQF19363.1|669055_670114_+	regulatory protein	NA	NA	NA	NA	NA
SQF19364.1|670126_671050_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
SQF19365.1|671350_672019_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.7	4.8e-17
SQF19366.1|672015_672927_+	1-phosphofructokinase	NA	NA	NA	NA	NA
SQF19367.1|672923_674870_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF19368.1|674968_675562_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.1	1.0e-10
SQF19369.1|675713_676421_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
SQF19370.1|676477_676696_-|transposase	degenerate transposase	transposase	A0A1B1P773	Bacillus_phage	55.9	2.7e-09
SQF19371.1|677377_678403_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQF19372.1|678905_679082_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF19373.1|679309_679690_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19374.1|679689_680538_+	degV family protein	NA	NA	NA	NA	NA
SQF19375.1|680662_681871_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.5	4.8e-39
SQF19376.1|681867_683745_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	1.9e-63
SQF19377.1|684636_685047_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF19378.1|685127_687140_-	5'-nucleotidase	NA	NA	NA	NA	NA
SQF19379.1|687359_688010_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF19380.1|688012_688681_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF19381.1|688689_689922_+	two component system histidine kinase	NA	NA	NA	NA	NA
SQF19382.1|690214_691093_+	mevalonate kinase	NA	NA	NA	NA	NA
SQF19383.1|691074_692019_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF19384.1|692011_693019_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF19385.1|693011_694001_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF19386.1|694230_695508_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF19387.1|695494_696670_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF19388.1|696878_697718_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF19389.1|697797_698295_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQF19390.1|698314_698485_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF19391.1|698614_699844_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	3.0e-137
>prophage 8
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	999765	1028102	1875632	transposase	Staphylococcus_prophage(25.0%)	29	NA	NA
SQF19682.1|999765_1000017_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19683.1|999958_1000546_+|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.8	8.3e-29
SQF19684.1|1001059_1002043_-	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
SQF19685.1|1002073_1003324_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
SQF19686.1|1003316_1003556_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
SQF19687.1|1003573_1004830_-	Protein dltB	NA	NA	NA	NA	NA
SQF19688.1|1004826_1006365_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	6.5e-41
SQF19689.1|1006376_1006520_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
SQF19690.1|1006783_1008775_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
SQF19691.1|1008967_1011142_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
SQF19692.1|1011141_1011882_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.2e-35
SQF19693.1|1012029_1012182_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19694.1|1012178_1013558_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQF19695.1|1013735_1014185_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
SQF19696.1|1014181_1014517_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF19697.1|1014519_1014831_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
SQF19698.1|1014853_1016848_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
SQF19699.1|1016953_1018048_-	outer surface protein	NA	NA	NA	NA	NA
SQF19700.1|1018056_1019457_-	beta-glucosidase	NA	NA	NA	NA	NA
SQF19701.1|1019732_1020866_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19702.1|1020904_1021702_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
SQF19703.1|1021706_1021865_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF19704.1|1021933_1023247_-	GTPase ObgE	NA	NA	NA	NA	NA
SQF19705.1|1023303_1023432_-	membrane protein	NA	NA	NA	NA	NA
SQF19706.1|1023672_1024197_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF19707.1|1024217_1024970_+|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	47.9	1.9e-54
SQF19708.1|1025324_1026197_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQF19709.1|1026420_1027731_+	membrane protein	NA	NA	NA	NA	NA
SQF19710.1|1027808_1028102_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	1106342	1192871	1875632	portal,terminase,tail,integrase,capsid	Streptococcus_phage(83.65%)	124	1109783:1109802	1190256:1190275
SQF19782.1|1106342_1107278_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.1	7.9e-66
SQF19783.1|1107332_1107506_-	membrane protein	NA	NA	NA	NA	NA
SQF19784.1|1107577_1109440_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	9.2e-90
1109783:1109802	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF19785.1|1109972_1110155_-	paratox	NA	A3F673	Streptococcus_phage	81.7	2.0e-21
SQF19786.1|1110394_1111153_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF19787.1|1111263_1111971_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF19788.1|1112039_1112792_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	97.2	2.1e-141
SQF19789.1|1112793_1113126_-	N-acetylmuramoyl-L-alanine amidase	NA	A3F664	Streptococcus_phage	98.2	2.8e-50
SQF19790.1|1113138_1113459_-	Uncharacterised protein	NA	A3F663	Streptococcus_phage	99.1	1.2e-50
SQF19791.1|1113469_1114081_-	phage protein	NA	Q938J7	Temperate_phage	94.6	4.5e-86
SQF19792.1|1114083_1114515_-	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF19793.1|1114526_1116410_-	phage protein	NA	Q938J9	Temperate_phage	95.9	2.0e-249
SQF19794.1|1116424_1117438_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	99.7	2.0e-184
SQF19795.1|1117434_1119414_-	phage protein	NA	A7J2A7	Streptococcus_phage	92.8	0.0e+00
SQF19796.1|1119423_1120266_-	phage protein	NA	A7J2A6	Streptococcus_phage	100.0	2.2e-160
SQF19797.1|1120277_1124435_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	97.7	5.0e-237
SQF19798.1|1124449_1124683_-	phage protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
SQF19799.1|1124757_1125213_-	phage protein	NA	A7J2A3	Streptococcus_phage	98.7	7.7e-75
SQF19800.1|1125266_1125866_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	94.3	1.2e-86
SQF19801.1|1125877_1126237_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.8e-58
SQF19802.1|1126240_1126585_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	1.4e-55
SQF19803.1|1126581_1126860_-	phage protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
SQF19804.1|1126870_1127227_-	phage protein	NA	A7J298	Streptococcus_phage	96.6	1.7e-56
SQF19805.1|1127238_1128126_-	phage protein	NA	A7J297	Streptococcus_phage	99.0	2.0e-159
SQF19806.1|1128138_1128708_-	phage protein	NA	A7J296	Streptococcus_phage	92.1	6.3e-74
SQF19807.1|1128954_1129224_-	phage protein	NA	Q938K9	Temperate_phage	84.1	2.8e-32
SQF19808.1|1129226_1129343_-	phage membrane protein	NA	A7J294	Streptococcus_phage	97.4	3.5e-08
SQF19809.1|1129419_1129509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19810.1|1129451_1129634_-	phage protein	NA	J7KBZ4	Streptococcus_phage	74.6	1.9e-16
SQF19811.1|1129854_1130610_+	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF19812.1|1130731_1131949_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	59.5	2.6e-162
SQF19813.1|1131942_1132059_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQF19814.1|1132067_1132295_-	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQF19815.1|1132291_1132564_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF19816.1|1132575_1133208_-	phage protein	NA	Q938J7	Temperate_phage	50.0	2.6e-44
SQF19817.1|1133210_1133639_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF19818.1|1133650_1135555_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF19819.1|1135564_1136572_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
SQF19820.1|1136568_1138620_-	phage protein	NA	A3F656	Streptococcus_phage	84.6	0.0e+00
SQF19821.1|1138616_1139387_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
SQF19822.1|1139399_1143500_-|tail	tail protein	tail	A3F654	Streptococcus_phage	66.3	0.0e+00
SQF19823.1|1143725_1144028_-	Uncharacterised protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
SQF19824.1|1144120_1144705_-|tail	major tail protein - phage associated	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
SQF19825.1|1144716_1145097_-	Uncharacterised protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
SQF19826.1|1145089_1145488_-	Uncharacterised protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
SQF19827.1|1145489_1145852_-	Uncharacterised protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
SQF19828.1|1145844_1146153_-	Uncharacterised protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
SQF19829.1|1146152_1146326_-	Uncharacterised protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
SQF19830.1|1146339_1147473_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
SQF19831.1|1147489_1148296_-	scaffolding protein	NA	A3F644	Streptococcus_phage	97.8	6.0e-147
SQF19832.1|1148276_1149464_-|portal	HK97 family phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
SQF19833.1|1149616_1149829_-	Uncharacterised protein	NA	A3F642	Streptococcus_phage	97.1	1.4e-34
SQF19834.1|1149831_1151562_-|terminase	putative phage terminase, large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
SQF19835.1|1151574_1151892_-	Uncharacterised protein	NA	A3F640	Streptococcus_phage	99.0	3.9e-49
SQF19836.1|1152032_1152338_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	96.0	3.8e-54
SQF19837.1|1152330_1152717_-	Uncharacterised protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
SQF19838.1|1152742_1152946_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19839.1|1153003_1153297_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19840.1|1153450_1154026_-	phage associated recombinase	NA	A3F636	Streptococcus_phage	99.5	7.4e-107
SQF19841.1|1154185_1154587_-	phage 31 late promoter transcriptional activator	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
SQF19842.1|1154601_1155429_-	B-cell receptor associated protein-like protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
SQF19843.1|1155431_1155770_-	immunity repressor protein - phage associated	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
SQF19844.1|1155766_1156048_-	Uncharacterised protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
SQF19845.1|1156062_1156455_-	single strand binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
SQF19846.1|1156451_1156673_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19847.1|1156669_1157155_-	phage protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
SQF19848.1|1157159_1157804_-	phage protein	NA	L0P368	Streptococcus_phage	65.7	4.6e-81
SQF19849.1|1157793_1158063_-	phage membrane protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
SQF19850.1|1158059_1158230_-	phage protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
SQF19851.1|1158226_1158670_-	phage protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
SQF19852.1|1158686_1158812_-	phage protein	NA	NA	NA	NA	NA
SQF19853.1|1158825_1159053_-	phage protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
SQF19854.1|1159052_1159865_-	phage DNA replication protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	6.8e-122
SQF19855.1|1159864_1160626_-	dnaD and phage-associated domain protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
SQF19856.1|1160618_1161959_-	DNA polymerase III delta prime subunit	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	7.1e-209
SQF19857.1|1161945_1162134_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19858.1|1162254_1162446_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19859.1|1162538_1162796_-	phage protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
SQF19860.1|1162869_1163589_-	antirepressor - phage associated	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
SQF19861.1|1163640_1164141_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19862.1|1164260_1164395_-	Uncharacterised protein	NA	A3F616	Streptococcus_phage	95.5	2.4e-16
SQF19863.1|1164468_1164681_-	phage protein	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
SQF19864.1|1164715_1164991_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19865.1|1165279_1165630_+	repressor - phage associated	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
SQF19866.1|1165633_1166026_+	phage protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
SQF19867.1|1166036_1166777_+	phage protein	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
SQF19868.1|1167087_1168284_+|integrase	phage associated integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
SQF19869.1|1168456_1169902_-	phage protein	NA	A7J293	Streptococcus_phage	92.9	6.8e-258
SQF19870.1|1169861_1171394_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.4	3.3e-287
SQF19871.1|1171409_1172687_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	98.1	5.4e-243
SQF19872.1|1172676_1173129_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF19873.1|1173218_1173635_-	phage protein	NA	A7J289	Streptococcus_phage	97.8	2.8e-71
SQF19874.1|1173631_1173823_-	phage protein	NA	NA	NA	NA	NA
SQF19875.1|1173826_1174096_-	phage membrane protein	NA	NA	NA	NA	NA
SQF19876.1|1174088_1174259_-	phage protein	NA	A7J285	Streptococcus_phage	98.1	2.8e-22
SQF19877.1|1174259_1175582_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	96.6	2.4e-249
SQF19878.1|1175578_1175854_-	phage protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
SQF19879.1|1176239_1178624_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.8	1.7e-277
SQF19880.1|1178628_1180551_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
SQF19881.1|1180593_1181151_-	phage protein	NA	D2J040	Enterococcus_phage	59.0	8.6e-52
SQF19882.1|1181165_1182323_-	phage protein	NA	A7J278	Streptococcus_phage	97.9	3.0e-216
SQF19883.1|1182322_1182622_-	phage protein	NA	A7J277	Streptococcus_phage	99.0	3.9e-43
SQF19884.1|1182710_1182914_-	phage protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
SQF19885.1|1183257_1183407_-	phage protein	NA	A7J275	Streptococcus_phage	90.0	3.8e-15
SQF19886.1|1183403_1183682_-	phage protein	NA	A7J274	Streptococcus_phage	93.5	2.1e-43
SQF19887.1|1183785_1183989_-	phage protein	NA	NA	NA	NA	NA
SQF19888.1|1183981_1184152_-	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQF19889.1|1184153_1184465_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
SQF19890.1|1184571_1184787_+	Uncharacterised protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
SQF19891.1|1184760_1185009_-	Uncharacterised protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
SQF19892.1|1185088_1185298_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19893.1|1185439_1185700_+	Uncharacterised protein	NA	M1PS67	Streptococcus_phage	70.9	5.8e-27
SQF19894.1|1185628_1185787_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19895.1|1185798_1186536_-	prophage LambdaSa1, antirepressor	NA	A0A2H4IZX7	uncultured_Caudovirales_phage	68.3	3.6e-90
SQF19896.1|1186547_1186739_-	phage protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
SQF19897.1|1187045_1187195_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF19898.1|1187967_1188240_+	Cro/CI family phage transcriptional regulator	NA	Q7Y4M0	Streptococcus_phage	72.8	4.8e-32
SQF19899.1|1188243_1188624_+	peptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
SQF19900.1|1188635_1188902_+	phage protein	NA	NA	NA	NA	NA
SQF19901.1|1189025_1190168_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	76.8	1.2e-172
SQF19902.1|1190257_1190533_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1190256:1190275	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
SQF19903.1|1190631_1191219_-	membrane protein	NA	NA	NA	NA	NA
SQF19904.1|1191196_1192057_-	GDSL family lipase	NA	NA	NA	NA	NA
SQF19905.1|1192031_1192871_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 10
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	1557331	1609518	1875632	portal,terminase,tail,integrase,holin	Streptococcus_phage(50.0%)	76	1557933:1557948	1610486:1610501
SQF20233.1|1557331_1557514_-	phage protein	NA	A3F673	Streptococcus_phage	80.0	3.7e-20
SQF20234.1|1557718_1557958_+	Phage protein	NA	NA	NA	NA	NA
1557933:1557948	attL	CTAAAGAAAATGGATT	NA	NA	NA	NA
SQF20235.1|1557996_1558470_+	Uncharacterised protein	NA	A3F671	Streptococcus_phage	94.3	8.0e-83
SQF20236.1|1558471_1558828_+	phage protein	NA	NA	NA	NA	NA
SQF20237.1|1558960_1559335_+	protein gp30	NA	NA	NA	NA	NA
SQF20238.1|1559334_1559937_+	AP2 domain	NA	A0A1S5SAA5	Streptococcus_phage	30.5	2.1e-19
SQF20239.1|1559938_1560154_+	Uncharacterised protein	NA	B3GW25	Streptococcus_phage	52.1	3.7e-11
SQF20240.1|1560222_1560462_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20241.1|1560648_1561851_-	phage associated protein	NA	Q938J4	Temperate_phage	97.5	4.6e-236
SQF20242.1|1561966_1562194_-	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	5.8e-31
SQF20243.1|1562190_1562466_-|holin	phage holin	holin	A7J2B2	Streptococcus_phage	100.0	2.6e-41
SQF20244.1|1562475_1563093_-	phage protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
SQF20245.1|1563095_1563527_-	phage protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
SQF20246.1|1563538_1565557_-	Phage infection protein	NA	Q938J9	Temperate_phage	70.7	2.9e-174
SQF20247.1|1565571_1566678_-	phage hyaluronidase	NA	A7J2A8	Streptococcus_phage	72.2	8.9e-125
SQF20248.1|1566677_1568732_-	phage protein	NA	A3F656	Streptococcus_phage	84.0	0.0e+00
SQF20249.1|1568728_1569508_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
SQF20250.1|1569540_1573176_-	tape measure domain protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
SQF20251.1|1573190_1573520_-	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	41.5	2.0e-11
SQF20252.1|1573549_1573909_-	phage protein	NA	D7RWD6	Brochothrix_phage	44.6	2.5e-20
SQF20253.1|1573961_1574615_-|tail	Major tail protein	tail	D7RWD5	Brochothrix_phage	53.0	1.0e-40
SQF20254.1|1574624_1575014_-	phage protein	NA	Q38611	Lactococcus_phage	66.7	6.0e-44
SQF20255.1|1575010_1575376_-	phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
SQF20256.1|1575356_1575665_-	phage protein	NA	A0A2P1JTW8	Anoxybacillus_phage	38.2	3.7e-12
SQF20257.1|1575661_1576015_-	phage protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
SQF20258.1|1576028_1576271_-	phage protein	NA	NA	NA	NA	NA
SQF20259.1|1576280_1577363_-	phage protein	NA	A0A2H4J022	uncultured_Caudovirales_phage	57.1	4.5e-105
SQF20260.1|1577365_1577734_-	phage protein	NA	A0A0K2CNR0	Brevibacillus_phage	34.5	2.8e-06
SQF20261.1|1577743_1578277_-	phage protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
SQF20262.1|1578420_1578687_-	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	76.1	9.2e-28
SQF20263.1|1579072_1579258_-	phage protein	NA	NA	NA	NA	NA
SQF20264.1|1579261_1579825_-	phage protein	NA	NA	NA	NA	NA
SQF20265.1|1579811_1580825_-	phage protein	NA	U6E9F1	Streptococcus_phage	44.2	4.7e-48
SQF20266.1|1580805_1582305_-|portal	phage portal protein, SPP1 family	portal	C9W9H5	Streptococcus_virus	54.8	5.8e-143
SQF20267.1|1582316_1583561_-|terminase	Phage terminase, large subunit	terminase	M1PG09	Streptococcus_phage	65.6	7.9e-154
SQF20268.1|1583557_1584007_-	phage protein	NA	Q938L4	Temperate_phage	76.2	1.4e-44
SQF20269.1|1584055_1584433_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	73.6	6.0e-49
SQF20270.1|1584433_1584757_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20271.1|1584815_1585133_-	phage protein	NA	B5SP24	Lactococcus_phage	58.7	2.7e-26
SQF20272.1|1585207_1585885_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	86.2	2.6e-111
SQF20273.1|1585863_1586382_-	phage DNA methylase	NA	A0A2H4JBH5	uncultured_Caudovirales_phage	68.5	7.0e-48
SQF20274.1|1587014_1587449_-	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	97.2	3.1e-73
SQF20275.1|1587763_1588090_-	phage membrane protein	NA	M1PFH6	Streptococcus_phage	45.9	5.8e-16
SQF20276.1|1588086_1588806_-	phage protein	NA	Q938L9	Temperate_phage	55.1	6.6e-36
SQF20277.1|1588802_1589096_-	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	97.9	3.0e-48
SQF20278.1|1589092_1589278_-	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	98.4	2.1e-26
SQF20279.1|1589302_1589530_-	phage protein	NA	A3F630	Streptococcus_phage	77.3	4.3e-26
SQF20280.1|1589533_1590019_-	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	96.3	4.3e-92
SQF20281.1|1590022_1590307_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	85.1	3.4e-36
SQF20282.1|1590303_1590468_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20283.1|1590464_1590635_-	phage protein	NA	Q938M0	Temperate_phage	96.8	3.2e-10
SQF20284.1|1590631_1591045_-	phage protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
SQF20285.1|1591054_1591324_-	phage protein	NA	Q938M2	Temperate_phage	100.0	4.0e-47
SQF20286.1|1591320_1591605_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	98.9	2.0e-49
SQF20287.1|1591598_1591850_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
SQF20288.1|1591846_1592203_-	phage protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	94.9	1.8e-58
SQF20289.1|1592186_1592507_-	phage protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
SQF20290.1|1592751_1594233_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	99.4	4.2e-295
SQF20291.1|1594222_1595026_-	phage protein	NA	A0A1P8VVM6	Streptococcus_phage	98.5	1.6e-152
SQF20292.1|1595037_1595496_-	phage protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
SQF20293.1|1595511_1596741_-	phage DNA/RNA helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
SQF20294.1|1596842_1597523_-	phage protein	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
SQF20295.1|1597523_1598006_-	phage protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
SQF20296.1|1598234_1598549_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	95.2	2.7e-50
SQF20297.1|1598564_1598699_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	2.5e-18
SQF20298.1|1598846_1598960_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20299.1|1598980_1599340_-	Uncharacterised protein	NA	Q9AZZ9	Lactococcus_phage	50.0	2.2e-08
SQF20300.1|1599444_1599696_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	94.0	7.6e-40
SQF20301.1|1599795_1600014_-	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	95.8	3.0e-32
SQF20302.1|1600201_1600561_+	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	95.0	1.7e-56
SQF20303.1|1600544_1600922_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	79.2	4.3e-55
SQF20304.1|1600947_1602246_+	phage membrane protein	NA	M1PLF9	Streptococcus_phage	62.7	1.1e-110
SQF20305.1|1602423_1603590_+|integrase	phage integrase	integrase	A3F610	Streptococcus_phage	43.1	2.3e-78
SQF20306.1|1603758_1606737_+	type I site-specific deoxyribonuclease, HsdR family protein	NA	A0A220A398	Liberibacter_phage	21.9	8.2e-24
SQF20307.1|1606749_1607925_+	Type I restriction-modification system specificity subunit	NA	A0A2H4PQP5	Staphylococcus_phage	32.9	2.5e-16
SQF20308.1|1607937_1609518_+	Type I restriction-modification system, DNA-methyltransferase subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	48.8	4.7e-119
1610486:1610501	attR	AATCCATTTTCTTTAG	NA	NA	NA	NA
>prophage 11
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	1875632	1798531	1814233	1875632	tRNA	Streptococcus_phage(61.54%)	22	NA	NA
SQF20470.1|1798531_1799323_-	transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	48.5	7.5e-09
SQF20471.1|1799414_1799648_+	transcriptional regulator	NA	NA	NA	NA	NA
SQF20472.1|1799702_1800110_+	phage protein	NA	A0A1X9I5V7	Streptococcus_phage	68.7	8.5e-49
SQF20473.1|1800123_1800741_+	pRha family phage regulatory protein	NA	A0A159B6D5	Gordonia_phage	38.8	2.2e-11
SQF20474.1|1800974_1801316_+	phage protein	NA	NA	NA	NA	NA
SQF20475.1|1801302_1801524_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF20476.1|1801526_1801718_+	phage protein	NA	NA	NA	NA	NA
SQF20477.1|1801729_1802059_+	phage protein	NA	NA	NA	NA	NA
SQF20478.1|1802061_1802334_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
SQF20479.1|1802334_1803231_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	3.0e-123
SQF20480.1|1803211_1804849_+	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A1X9I717	Streptococcus_phage	82.1	1.8e-259
SQF20481.1|1805135_1805309_+	Uncharacterised protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
SQF20482.1|1805314_1805488_+	phage protein	NA	NA	NA	NA	NA
SQF20483.1|1805489_1805999_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF20484.1|1806072_1806561_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF20485.1|1806964_1807327_+	phage protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	8.7e-05
SQF20486.1|1807301_1807685_+	phage protein	NA	Q938L8	Temperate_phage	42.4	3.7e-14
SQF20487.1|1807890_1808526_+	phage protein	NA	NA	NA	NA	NA
SQF20488.1|1808922_1811478_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.4	2.3e-43
SQF20489.1|1811464_1811671_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQF20490.1|1811813_1812251_-	arginine repressor	NA	NA	NA	NA	NA
SQF20491.1|1812541_1814233_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2I2L3K1	Orpheovirus	32.4	1.9e-73
